View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2811R-Insertion-5 (Length: 940)

Name: NF2811R-Insertion-5
Description: NF2811R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2811R-Insertion-5
NF2811R-Insertion-5
[»] chr5 (1 HSPs)
chr5 (9-880)||(41917737-41918609)
[»] chr2 (2 HSPs)
chr2 (259-880)||(1686863-1687488)
chr2 (189-238)||(1686865-1686914)


Alignment Details
Target: chr5 (Bit Score: 771; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 771; E-Value: 0
Query Start/End: Original strand, 9 - 880
Target Start/End: Original strand, 41917737 - 41918609
Alignment:
Q  9 tcatgactatacagaagatgttgaattatgtccactagggtctttaaatnnnnnnnggaagaatagccaaaatgatgttaatgatcagccgcaaaaaaca 108  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||    
T  41917737 tcatgactatacagaagatgttgaattatatccactagggtctttaaataaaaaaaggaagaatagccaaaatgatgttaatgatcagccgcaaaaaaca 41917836  T
Q  109 cctaaaaggaagaaatatcaacctaaagtggtgtctccgtatccagagaaattaaagaaattccatcccggaagcaacggcactccaaaaccttcaactc 208  Q
     | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  41917837 gccaaaaggaagaaatatcaacctaaagtggtgtctccgtatccagagaaattaaagaaattccatcccggaagcaacggcactccaaaaccatcaactc 41917936  T
Q  209 cgaagcagaggaaaagttatgttagaaagaccgccaacactcatgaaaacaacactccaaaaccttcaactccgaagcagagaaaaagttatgttagaaa 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  41917937 cgaagcagaggaaaagttatgttagaaagaccgccaacactcatgacaacaacactccaaaaccttcaactccgaaacagaggaaaagttatgttagaaa 41918036  T
Q  309 gactgccaagattcctgagtgtcaaaagccattatttgtcgatgatggagattccatctctttcccatttttggaatattccaaagattcaaaggtttat 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  41918037 gactgccaagattcctgagtgtcaaaagccattatttgtcgatgatggagattccatctctttcccatttttggaatatttcaaagattcaaaggtttat 41918136  T
Q  409 cagggtggatttgaaaattcaactataactaatgaatctggcatcgtatacaattcggtacaaagttatcagaaaatgtcttcattgtcaggtttatgtc 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41918137 cagggtggatttgaaaattcaactataactaatgaatctggcatcgtatacaattcggtacaaagttatcagaaaatgtcttcattgtcaggtttatgtc 41918236  T
Q  509 tagttgagagtaggagaattggacaaaatcttccaataatgtgtaaaaggaaaagagttagaagagaaagaataagtttggtaaaactcttgcccccgtt 608  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41918237 tagttgagagtaggagaattggacaaaattttccaataatgtgtaaaaggaaaagagttagaagagaaagaataagtttggtaaaactcttgcccccgtt 41918336  T
Q  609 tgcaaagggcaagagatcaaaaagttttgttacggagagaaaatgttggacacaattttgggcggaaggaaattctacaaccagccgaaaaatgagatct 708  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  41918337 tgcaaagggccagagatcaaaaagttttgttacgaagagaaaatgttggacacaattttgggcagaaggaaattctacaaccagccgaaaaatgagatct 41918436  T
Q  709 ttaatcaagaaaattatttccttgaagnnnnnnntgcatcgaaagaaaaataagagagacgtccgcaaaaagtca-gggaattagttctttataatcgac 807  Q
    |||||||||||||||||||||||||||       ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  41918437 ttaatcaagaaaattatttccttgaagaaaaaaatgcatcgaaagaaaaataagagagatgtccgcaaaaagtcaggggaattagttctttataatcgac 41918536  T
Q  808 catcagcagaagttgaagtaatgcttgacgaagagacattacgagtatggaatttactcgttgttgaaaacaa 880  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41918537 catcagcagaagttgaagtaatgcttgacgaagagacattacgagtatggaatttactcgttgttgaaaacaa 41918609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 171; Significance: 2e-91; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 259 - 880
Target Start/End: Original strand, 1686863 - 1687488
Alignment:
Q  259 aacactccaaaaccttcaactccgaagcagagaaaaagttatgttagaaagactgccaagattcctgagtgtcaaaagccattatttgtcgatgatggag 358  Q
    |||||||| ||||||  ||||||||||||||| ||||||||||||||||||| ||| |||| |  ||||||||||   ||||||||||| |||||||||     
T  1686863 aacactcccaaacctgtaactccgaagcagaggaaaagttatgttagaaagagtgctaagacttgtgagtgtcaacgaccattatttgttgatgatggaa 1686962  T
Q  359 attccatctctttcccatttttggaatattccaaagattcaaaggtttatcagggtggatttgaaaattcaactataactaatgaatctggcatcgtata 458  Q
    ||||||||||||| |||||||||  | ||| |||  || ||||| || |  || |||||||||| | |||||| |||||||||| |||||  |||| |||    
T  1686963 attccatctctttaccatttttgttaaatttcaacaatacaaagattgagaagagtggatttgagagttcaaccataactaatgtatctgctatcgaata 1687062  T
Q  459 caattcggtacaaagttatcagaaaatgtcttcattgtcaggtttatgtctagttgagagtaggagaattggacaaaatcttccaataatgtgtaaaagg 558  Q
    ||||||  |||||||||| || |||||| |||||||||||  ||||||||| ||||||| ||| |||||||||  |||| |||||||||||||||| |||    
T  1687063 caattcactacaaagttaccaaaaaatgacttcattgtcatctttatgtcttgttgagaatagaagaattggaggaaattttccaataatgtgtaagagg 1687162  T
Q  559 aaaagagttagaagagaaagaataagtttggtaaaactcttgcccccgtttgcaaagggcaagagatcaaaaagttttgttacggagagaaaatgttgga 658  Q
    |||||||| | |||||||||||||| ||||||||||||||||  ||| ||||||||||| |  |||||||||| |||| ||| | |||| ||||||||||    
T  1687163 aaaagagtaaaaagagaaagaataaatttggtaaaactcttgaacccttttgcaaagggtagtagatcaaaaacttttattaggaagaggaaatgttgga 1687262  T
Q  659 cacaattttgggcggaaggaaatt---ctacaaccagccgaaaaatgagatctttaatcaagaaaattatttccttgaagnnnnnnntgcatcgaaagaa 755  Q
     | | || |  |  ||||||||||   |||||| |||||||||||||| | || |||||||||| ||||||||||  ||        | |||||||||      
T  1687263 aagatttctacgtagaaggaaattctactacaatcagccgaaaaatgaaaactataatcaagaagattatttcctcaaataaaaaaatacatcgaaaggc 1687362  T
Q  756 aaataagagagacgtccgcaaaaagtcagg-gaattagttctttataatcgaccatcagcagaagttgaagtaatgcttgacgaagagacattacgagta 854  Q
    |||||||||| | ||||| ||||| ||||| ||||||||||||||| | || ||||      ||||  | |||| | ||||||||||||||||||| |||    
T  1687363 aaataagagaaatgtccgtaaaaaatcaggagaattagttctttatgaacggccattgttgaaagtcaatgtaaagtttgacgaagagacattacgtgta 1687462  T
Q  855 tggaatttactcgttgttgaaaacaa 880  Q
    ||||| || ||||||| |||||||||    
T  1687463 tggaacttgctcgttgctgaaaacaa 1687488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 1686865 - 1686914
Alignment:
Q  189 cactccaaaaccttcaactccgaagcagaggaaaagttatgttagaaaga 238  Q
    |||||| ||||||  |||||||||||||||||||||||||||||||||||    
T  1686865 cactcccaaacctgtaactccgaagcagaggaaaagttatgttagaaaga 1686914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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