View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2811R-Insertion-7 (Length: 794)
Name: NF2811R-Insertion-7
Description: NF2811R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2811R-Insertion-7 |
 | |
|
| [»] chr8 (12 HSPs) |
| |
|
| [»] scaffold0428 (1 HSPs) |
| | |
|
| [»] chr1 (2 HSPs) |
| |
|
| [»] scaffold0184 (1 HSPs) |
| | |
|
| [»] scaffold0078 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 739; Significance: 0; HSPs: 12)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 739; E-Value: 0
Query Start/End: Original strand, 9 - 794
Target Start/End: Complemental strand, 894727 - 893941
Alignment:
| Q |
9 |
ggactagaattgagtagtaagaaattcttgtgggctgttagagttccaagtaaagttgttagctctgcttattttgttggagaaaaagatgatccattag |
108 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
894727 |
ggactagaattgagtggtaagaaattcttgtgggttgttagagttccaagtaaagttgttagctctgcttattttgttggagaaaaagatgatccattag |
894628 |
T |
|
| Q |
109 |
attatttaccaagtgattttctggaaagaaccaaagaaaatggattggttgttccatcatgggcaccacaagttgagattcttggtcatggatcaattgg |
208 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
894627 |
attatttaccaagtggttttctggaaagaaccaaagaaaatggattggttgttccatcatgggcaccacaagttgagattcttggtcatggatcaattgg |
894528 |
T |
|
| Q |
209 |
tggttttttgagtcattgtggttggggttcaactttggagagtgtggttaatggtgtgcctatgattgcatggcctctatttgctgaacaaaagatgaat |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
894527 |
tggttttttgagtcattgtggttggggttcaactttggagagtgtggttaatggtgtgcctatgattgcatggcctctatttgctgaacaaaggatgaat |
894428 |
T |
|
| Q |
309 |
gccaaattattgacagatgagctcaaggtggctgtgaggccaaagattgatgatgaaagtgggatagtgaaaagagaagaagttgccaactgtgtaaaga |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
894427 |
gccaaattattgacagatgagctcaaggtggctgtgaggccaaagattgatgatgaaagtgggatagtgaaaagagaagaagttgccaactgtgtaaaga |
894328 |
T |
|
| Q |
409 |
gaatcatagaaggtgatgaaagcttggaaatacaaaagagaattaaggaattgagtgttggtgctgctgttgcaacaagtgaaaatggttcatctaagaa |
508 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
894327 |
gaatcatggaaggtgatgaaagcttggaaatacaaaagagaattaaggaattgagtgttggtgctgctgttgcaacaagtgaaaatggttcatctaagaa |
894228 |
T |
|
| Q |
509 |
ggcactctcttctttagcatcgagattgcaaaacctttgagcgtcctgattcattgatgactaa-ttttcttgtattatggctttacttgtaagcaatta |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
894227 |
ggcactctcttctttagcatcgagattgcaaaacttttgagcatcctgattcattcatgactaatttttcttgtattatggctttacttgtaaacaatta |
894128 |
T |
|
| Q |
608 |
aacatggtttcaagattctgaatgcagaacctaaggaatatggagcatggaccttacaagatactagtttcttattcttttcggattcagatttgctcgg |
707 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
894127 |
aacatggtttcaagattctgaatgcagaacctaaggaatatggagcatggacctttcaagatactagtttcttattcttttcggattcagatttgctcgg |
894028 |
T |
|
| Q |
708 |
atgatggtaaagttctgataatccaagttttatagttagtgatcattgtaacttgaattccctgcattccacctatagaaacttaag |
794 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
894027 |
atgatggtaaagttctgataatccaagttttatagttagtgatcattgtaacttgaattccctgcattccacctatagaaacttaag |
893941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 13 - 528
Target Start/End: Original strand, 905920 - 906435
Alignment:
| Q |
13 |
tagaattgagtagtaagaaattcttgtgggctgttagagttccaagtaaagttgttagctctgcttattttgttggagaaaaagatgatccattagatta |
112 |
Q |
| |
|
||||||||||| |||| || |||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||| || |
|
|
| T |
905920 |
tagaattgagtggtaaaaagttcttgtgggttgttagagttccaagtaaagatgttaactctgcttattttgttggagcaaaagatgatccattagagta |
906019 |
T |
|
| Q |
113 |
tttaccaagtgattttctggaaagaaccaaagaaaatggattggttgttccatcatgggcaccacaagttgagattcttggtcatggatcaattggtggt |
212 |
Q |
| |
|
|||||||| || ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
906020 |
tttaccaaatggtttcttggaaagaaacaaagaaaatggattggttgttccatcatgggcaccacaagttgagattcttggtcatggatcaattggtggg |
906119 |
T |
|
| Q |
213 |
tttttgagtcattgtggttggggttcaactttggagagtgtggttaatggtgtgcctatgattgcatggcctctatttgctgaacaaaagatgaatgcca |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||| ||||||| ||||||||| | |
|
|
| T |
906120 |
tttttgagtcattgtggttggggttcaactttggagactgtggttaatggggtgcctgtgattgcatggcctctatttgcagaacaaaggatgaatgcga |
906219 |
T |
|
| Q |
313 |
aattattgacagatgagctcaaggtggctgtgaggccaaagattgatgatgaaagtgggatagtgaaaagagaagaagttgccaactgtgtaaagagaat |
412 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| || |||||||||||||| |
|
|
| T |
906220 |
gattattgacagatgtgctcaaagtggctgtgaggccaaaggttgatgatgaaagtgggatagtgaaaagagaggaagttgctaaatgtgtaaagagaat |
906319 |
T |
|
| Q |
413 |
catagaaggtgatgaaagcttggaaatacaaaagagaattaaggaattgagtgttggtgctgctgttgcaacaagtgaaaatggttcatctaagaaggca |
512 |
Q |
| |
|
||| |||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||| ||| ||| |
|
|
| T |
906320 |
catggaaggtgatgaaagcttggagatacaaaagagaattaaagaattgagtgatggtgctgctgttgcaacaagtgaacatggttcatctaggaaagca |
906419 |
T |
|
| Q |
513 |
ctctcttctttagcat |
528 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
906420 |
ctctcttctttagcat |
906435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 96 - 394
Target Start/End: Complemental strand, 548888 - 548590
Alignment:
| Q |
96 |
gatgatccattagattatttaccaagtgattttctggaaagaaccaaagaaaatggattggttgttccatcatgggcaccacaagttgagattcttggtc |
195 |
Q |
| |
|
|||||||||||| ||||||||||| | ||| ||||||| || ||||| | || ||||| |||||||||||||| ||||||||||| |||||| ||| |
|
|
| T |
548888 |
gatgatccattaaattatttaccattaggtttcttggaaaggactaaagatcaaggcttggtggttccatcatgggctccacaagttgaaattcttagtc |
548789 |
T |
|
| Q |
196 |
atggatcaattggtggttttttgagtcattgtggttggggttcaactttggagagtgtggttaatggtgtgcctatgattgcatggcctctatttgctga |
295 |
Q |
| |
|
|| | |||| |||||||||||||| ||||||||||||| |||||| ||| ||| || | ||| ||||||||||||||||||| ||||| | |||||||| |
|
|
| T |
548788 |
atagttcaactggtggttttttgactcattgtggttggagttcaagtttagagggtttagtttatggtgtgcctatgattgcttggccattgtttgctga |
548689 |
T |
|
| Q |
296 |
acaaaagatgaatgccaaattattgacagatgagctcaaggtggctgtgaggccaaagattgatgatgaaagtgggatagtgaaaagagaagaagttgc |
394 |
Q |
| |
|
|| | ||||| || || | | || |||| |||| ||||| ||||||||||| |||||||||||| |||||| || ||| ||||||||||||| |
|
|
| T |
548688 |
gcagagaatgaacgctgcatcactcaccgatgttttcaaagtggcagtgaggccaaaaattgatgatgaagatgggattgtaaaaggagaagaagttgc |
548590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 91 - 394
Target Start/End: Original strand, 23423711 - 23424014
Alignment:
| Q |
91 |
aaaaagatgatccattagattatttaccaagtgattttctggaaagaaccaaagaaaatggattggttgttccatcatgggcaccacaagttgagattct |
190 |
Q |
| |
|
|||| |||||||||||| ||||||||||| | ||| ||||||| || ||||| | || ||||| |||||||||||||| ||||||||||| ||||| |
|
|
| T |
23423711 |
aaaaggatgatccattaaattatttaccattaggtttcttggaaaggactaaagatcaaggcttggtggttccatcatgggctccacaagttgaaattct |
23423810 |
T |
|
| Q |
191 |
tggtcatggatcaattggtggttttttgagtcattgtggttggggttcaactttggagagtgtggttaatggtgtgcctatgattgcatggcctctattt |
290 |
Q |
| |
|
| ||||| | |||| |||||||||||||| ||||||||||||| |||||| ||| ||| || | ||| ||||||||||||||||||| ||||| | ||| |
|
|
| T |
23423811 |
tagtcatagttcaactggtggttttttgactcattgtggttggagttcaagtttagagggtttagtttatggtgtgcctatgattgcttggccattgttt |
23423910 |
T |
|
| Q |
291 |
gctgaacaaaagatgaatgccaaattattgacagatgagctcaaggtggctgtgaggccaaagattgatgatgaaagtgggatagtgaaaagagaagaag |
390 |
Q |
| |
|
||||| || | ||||| || | | | || |||| |||| ||||| ||||||||||| |||||||||||| |||||| || ||| ||||||||| |
|
|
| T |
23423911 |
gctgagcagagaatgaacgcagcaacactcaccgatgttttcaaagtggcagtgaggccaaaaattgatgatgaagatgggattgtaaaaggagaagaag |
23424010 |
T |
|
| Q |
391 |
ttgc |
394 |
Q |
| |
|
|||| |
|
|
| T |
23424011 |
ttgc |
23424014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 201 - 310
Target Start/End: Complemental strand, 10201936 - 10201827
Alignment:
| Q |
201 |
tcaattggtggttttttgagtcattgtggttggggttcaactttggagagtgtggttaatggtgtgcctatgattgcatggcctctatttgctgaacaaa |
300 |
Q |
| |
|
|||||||| || ||| ||||||||||||||||| ||||||| | ||||||||||| |||||||||||| ||||||||||||| || | |||||| |||| |
|
|
| T |
10201936 |
tcaattggagggtttgtgagtcattgtggttggaattcaactcttgagagtgtggtgaatggtgtgcctttgattgcatggccactctatgctgagcaaa |
10201837 |
T |
|
| Q |
301 |
agatgaatgc |
310 |
Q |
| |
|
|||||||||| |
|
|
| T |
10201836 |
agatgaatgc |
10201827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 201 - 310
Target Start/End: Complemental strand, 10209009 - 10208900
Alignment:
| Q |
201 |
tcaattggtggttttttgagtcattgtggttggggttcaactttggagagtgtggttaatggtgtgcctatgattgcatggcctctatttgctgaacaaa |
300 |
Q |
| |
|
|||||||| || ||| ||||||||||||||||| ||||||| | ||||||||||| |||||||||||| ||||||||||||| || | |||||| |||| |
|
|
| T |
10209009 |
tcaattggagggtttgtgagtcattgtggttggaattcaactcttgagagtgtggtgaatggtgtgcctttgattgcatggccactctatgctgagcaaa |
10208910 |
T |
|
| Q |
301 |
agatgaatgc |
310 |
Q |
| |
|
|||||||||| |
|
|
| T |
10208909 |
agatgaatgc |
10208900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 675 - 794
Target Start/End: Original strand, 901153 - 901269
Alignment:
| Q |
675 |
tttcttattcttttcggattcagatttgctcggatgatggtaaagttctgataatccaagttttatagttagtgatcattgtaacttgaattccctgcat |
774 |
Q |
| |
|
||||||||| |||| |||| || ||||||| ||||||||||| ||||||||||||| || ||||||||||||||||||| || || ||||||||||| |
|
|
| T |
901153 |
tttcttattttttttggatacaaatttgctaggatgatggtatagttctgataatctgaggtttatagttagtgatcatt---acatggattccctgcat |
901249 |
T |
|
| Q |
775 |
tccacctatagaaacttaag |
794 |
Q |
| |
|
|||| |||||||||||||| |
|
|
| T |
901250 |
tccatgtatagaaacttaag |
901269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 268
Target Start/End: Original strand, 2436893 - 2437007
Alignment:
| Q |
154 |
tggttgttccatcatgggcaccacaagttgagattcttggtcatggatcaattggtggttttttgagtcattgtggttggggttcaactttggagagtgt |
253 |
Q |
| |
|
||||| ||||||||||||||||||| ||| | || ||| |||| ||||| |||||||||| |||||||| ||||| ||| |||||| | |||||||| |
|
|
| T |
2436893 |
tggttattccatcatgggcaccacaggttcaaatccttagtcacagatcagttggtggtttcttgagtcactgtggctggaattcaacccttgagagtgt |
2436992 |
T |
|
| Q |
254 |
ggttaatggtgtgcc |
268 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
2436993 |
ggtgcatggtgtgcc |
2437007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 202 - 300
Target Start/End: Complemental strand, 560495 - 560397
Alignment:
| Q |
202 |
caattggtggttttttgagtcattgtggttggggttcaactttggagagtgtggttaatggtgtgcctatgattgcatggcctctatttgctgaacaaa |
300 |
Q |
| |
|
||||||||| ||||| | ||||||||||||| ||||| |||||||||| | ||| ||||||| || ||||| || ||||| ||||||||||||||| |
|
|
| T |
560495 |
caattggtgcatttttaactcattgtggttggaattcaattttggagagtattgttcatggtgtcccaatgatagcttggccattatttgctgaacaaa |
560397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 268
Target Start/End: Original strand, 1963481 - 1963595
Alignment:
| Q |
154 |
tggttgttccatcatgggcaccacaagttgagattcttggtcatggatcaattggtggttttttgagtcattgtggttggggttcaactttggagagtgt |
253 |
Q |
| |
|
||||||||||||||||||||||||| || | || ||| |||| | || |||||||| |||||| ||||||||||||| |||||| | |||||||| |
|
|
| T |
1963481 |
tggttgttccatcatgggcaccacagattcaaatccttagtcacagttccattggtgggtttttgtctcattgtggttggaattcaacccttgagagtgt |
1963580 |
T |
|
| Q |
254 |
ggttaatggtgtgcc |
268 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
1963581 |
ggtgtatggtgtgcc |
1963595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 231
Target Start/End: Complemental strand, 566377 - 566313
Alignment:
| Q |
167 |
atgggcaccacaagttgagattcttggtcatggatcaattggtggttttttgagtcattgtggtt |
231 |
Q |
| |
|
|||||||||||||||||| |||||||||||| | ||||||| ||| ||||| |||||| ||||| |
|
|
| T |
566377 |
atgggcaccacaagttgaaattcttggtcatagttcaattgatggatttttatgtcattttggtt |
566313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 295
Target Start/End: Complemental strand, 2018331 - 2018190
Alignment:
| Q |
154 |
tggttgttccatcatgggcaccacaagttgagattcttggtcatggatcaattggtggttttttgagtcattgtggttggggttcaactttggagagtgt |
253 |
Q |
| |
|
||||| ||||||||||||||||||| || | || ||| |||| | ||| ||||||| || |||| ||| ||||||||| |||||| | |||||||| |
|
|
| T |
2018331 |
tggttattccatcatgggcaccacagattcaaatccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaacgcttgagagtgt |
2018232 |
T |
|
| Q |
254 |
ggttaatggtgtgcctatgattgcatggcctctatttgctga |
295 |
Q |
| |
|
| | |||||||||| | || ||||||||||||||||||| |
|
|
| T |
2018231 |
gttgcatggtgtgccactaatcacatggcctctatttgctga |
2018190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 12 - 476
Target Start/End: Complemental strand, 8294676 - 8294212
Alignment:
| Q |
12 |
ctagaattgagtagtaagaaattcttgtgggctgttagagttccaagtaaagttgttagctctgcttattttgttggagaaaaagatgatccattagatt |
111 |
Q |
| |
|
|||||||||||| || | ||||||||||||| ||| |||| |||||||||| | ||| ||||| |||||| |||| |||| ||||||||||||| | |
|
|
| T |
8294676 |
ctagaattgagtggtcacaaattcttgtgggttgtgagagctccaagtaaaaattctagttctgcctattttagtggacaaaacaatgatccattagagt |
8294577 |
T |
|
| Q |
112 |
atttaccaagtgattttctggaaagaaccaaagaaaatggattggttgttccatcatgggcaccacaagttgagattcttggtcatggatcaattggtgg |
211 |
Q |
| |
|
||||||||| || |||| |||||||||| |||||||||||| | || ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8294576 |
atttaccaaatggttttttggaaagaacaaaagaaaatggactagtagttgcatcatgggcaccacaagttgagattcttggtcatggatcaattggtgg |
8294477 |
T |
|
| Q |
212 |
ttttttgagtcattgtggttggggttcaactttggagagtgtggttaatggtgtgcctatgattgcatggcctctatttgctgaacaaaagatgaatgcc |
311 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||||||||||||||| || ||||| ||||||||||||| | ||||| || |||| ||||||||| |
|
|
| T |
8294476 |
gtttttaagtcattgtggttggagttcaactttggagagtgtggttaacggcgtgccgttgattgcatggccattgtttgcagagcaaaggatgaatgca |
8294377 |
T |
|
| Q |
312 |
aaattattgacagatgagctcaaggtggctgtgaggccaaagattgatgatgaaagtgggatagtgaaaagagaagaagttgccaactgtgtaaagagaa |
411 |
Q |
| |
|
|||||| | || |||| ||||| ||||| |||||||||||| |||||||||||| |||||| | ||| ||| ||||||||||| | |||| |||| |
|
|
| T |
8294376 |
aaattactcactgatgtactcaaagtggcagtgaggccaaaggttgatgatgaaactgggattataaaacaagaggaagttgccaaagctataaaaagaa |
8294277 |
T |
|
| Q |
412 |
tcatagaaggtgatgaaagcttggaaatacaaaagagaattaaggaattgagtgttggtgctgct |
476 |
Q |
| |
|
|||| |||| ||||||||||| ||||| ||||| ||| || ||||||||||||||||||||| |
|
|
| T |
8294276 |
tcatgaaaggagatgaaagctttgaaattagaaagaaaatcaaagaattgagtgttggtgctgct |
8294212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 12 - 476
Target Start/End: Original strand, 33257079 - 33257543
Alignment:
| Q |
12 |
ctagaattgagtagtaagaaattcttgtgggctgttagagttccaagtaaagttgttagctctgcttattttgttggagaaaaagatgatccattagatt |
111 |
Q |
| |
|
|||||||||||| || | || |||||||||| ||| |||| |||||||||| | ||| |||||||||||| |||| |||| |||| |||||||| | |
|
|
| T |
33257079 |
ctagaattgagtggtcacaagttcttgtgggttgtgagagctccaagtaaacattctagttctgcttattttaatggacaaaacaatgaaccattagagt |
33257178 |
T |
|
| Q |
112 |
atttaccaagtgattttctggaaagaaccaaagaaaatggattggttgttccatcatgggcaccacaagttgagattcttggtcatggatcaattggtgg |
211 |
Q |
| |
|
||||||||| | |||| | |||||||| ||||| || ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33257179 |
atttaccaaacggttttgtcgaaagaacaaaagagaagggattagttgttacatcatgggcaccacaagttgagattcttggtcatggatcaattggtgg |
33257278 |
T |
|
| Q |
212 |
ttttttgagtcattgtggttggggttcaactttggagagtgtggttaatggtgtgcctatgattgcatggcctctatttgctgaacaaaagatgaatgcc |
311 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||||||||||||||| || || || ||||||||||||| | ||||| || |||| |||||||| |
|
|
| T |
33257279 |
ttttttaagtcattgtggttggagttcaactttggagagtgtggttaacggcgttccgttgattgcatggccattgtttgcagagcaaagaatgaatgca |
33257378 |
T |
|
| Q |
312 |
aaattattgacagatgagctcaaggtggctgtgaggccaaagattgatgatgaaagtgggatagtgaaaagagaagaagttgccaactgtgtaaagagaa |
411 |
Q |
| |
|
|||||| | || |||| ||| || ||||| || ||||||||| |||||| ||||| ||||||| | ||| |||| ||||| |||| | ||||||||| |
|
|
| T |
33257379 |
aaattactcactgatgtgctaaaagtggcagtaaggccaaaggttgatggtgaaactgggataataaaacgagaggaagtctccaaagctttaaagagaa |
33257478 |
T |
|
| Q |
412 |
tcatagaaggtgatgaaagcttggaaatacaaaagagaattaaggaattgagtgttggtgctgct |
476 |
Q |
| |
|
|||| ||||| ||||||||||| ||||| | ||||| ||| || |||||||||||| |||||||| |
|
|
| T |
33257479 |
tcatggaaggagatgaaagctttgaaattcgaaagaaaatcaaagaattgagtgttagtgctgct |
33257543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 113 - 310
Target Start/End: Complemental strand, 845147 - 844950
Alignment:
| Q |
113 |
tttaccaagtgattttctggaaagaaccaaagaaaatggattggttgttccatcatgggcaccacaagttgagattcttggtcatggatcaattggtggt |
212 |
Q |
| |
|
|||||||| || |||| |||||||||| |||| || || || || ||||||| |||||||||||| |||| |||||||||||| | ||||||||||| |
|
|
| T |
845147 |
tttaccaaatggttttttggaaagaacaaaagggaaaggtttagtagttccatattgggcaccacaaattgaaattcttggtcatagttcaattggtggg |
845048 |
T |
|
| Q |
213 |
tttttgagtcattgtggttggggttcaactttggagagtgtggttaatggtgtgcctatgattgcatggcctctatttgctgaacaaaagatgaatgc |
310 |
Q |
| |
|
||||| | ||||||||||||| |||||| | || ||||| || ||||| | || || || |||||||| || ||||||||||||||||||||||| |
|
|
| T |
845047 |
tttttaactcattgtggttggaattcaacacttgaaagtgttgtaaatggaattccaataatagcatggccactctttgctgaacaaaagatgaatgc |
844950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 159 - 310
Target Start/End: Complemental strand, 870385 - 870234
Alignment:
| Q |
159 |
gttccatcatgggcaccacaagttgagattcttggtcatggatcaattggtggttttttgagtcattgtggttggggttcaactttggagagtgtggtta |
258 |
Q |
| |
|
||||||| |||||||||||| |||| |||||||||||| | ||||||||||| ||||| | ||||||||||||| |||||| | || ||||| || | |
|
|
| T |
870385 |
gttccatattgggcaccacaaattgaaattcttggtcatagttcaattggtgggtttttaactcattgtggttggaattcaacacttgaaagtgttgtaa |
870286 |
T |
|
| Q |
259 |
atggtgtgcctatgattgcatggcctctatttgctgaacaaaagatgaatgc |
310 |
Q |
| |
|
|||| | || || || |||||||| || ||||||||||||||||||||||| |
|
|
| T |
870285 |
atggaattccaataatagcatggccactctttgctgaacaaaagatgaatgc |
870234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 169; Significance: 3e-90; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 12 - 476
Target Start/End: Original strand, 1197 - 1661
Alignment:
| Q |
12 |
ctagaattgagtagtaagaaattcttgtgggctgttagagttccaagtaaagttgttagctctgcttattttgttggagaaaaagatgatccattagatt |
111 |
Q |
| |
|
|||||||||||| || | || |||||||||| ||| |||| |||||||||| | ||| |||||||||||| |||| |||| |||| |||||||| | |
|
|
| T |
1197 |
ctagaattgagtggtcacaagttcttgtgggttgtgagagctccaagtaaacattctagttctgcttattttaatggacaaaacaatgaaccattagagt |
1296 |
T |
|
| Q |
112 |
atttaccaagtgattttctggaaagaaccaaagaaaatggattggttgttccatcatgggcaccacaagttgagattcttggtcatggatcaattggtgg |
211 |
Q |
| |
|
||||||||| | |||| | |||||||| ||||| || ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1297 |
atttaccaaacggttttgtcgaaagaacaaaagagaagggattagttgttacatcatgggcaccacaagttgagattcttggtcatggatcaattggtgg |
1396 |
T |
|
| Q |
212 |
ttttttgagtcattgtggttggggttcaactttggagagtgtggttaatggtgtgcctatgattgcatggcctctatttgctgaacaaaagatgaatgcc |
311 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||||||||||||||| || || || ||||||||||||| | ||||| || |||| |||||||| |
|
|
| T |
1397 |
ttttttaagtcattgtggttggagttcaactttggagagtgtggttaacggcgtaccgttgattgcatggccattgtttgcagagcaaagaatgaatgca |
1496 |
T |
|
| Q |
312 |
aaattattgacagatgagctcaaggtggctgtgaggccaaagattgatgatgaaagtgggatagtgaaaagagaagaagttgccaactgtgtaaagagaa |
411 |
Q |
| |
|
|||||| | || |||| ||| || ||||| || ||||||||| |||||| ||||| ||||||| | ||| |||| ||||| |||| | ||||||||| |
|
|
| T |
1497 |
aaattactcactgatgtgctaaaagtggcagtaaggccaaaggttgatggtgaaactgggataataaaacgagaggaagtctccaaagctttaaagagaa |
1596 |
T |
|
| Q |
412 |
tcatagaaggtgatgaaagcttggaaatacaaaagagaattaaggaattgagtgttggtgctgct |
476 |
Q |
| |
|
|||| ||||| ||||||||||| ||||| | ||||| ||| || |||||||||||| |||||||| |
|
|
| T |
1597 |
tcatggaaggagatgaaagctttgaaattcgaaagaaaatcaaagaattgagtgttagtgctgct |
1661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 585 - 654
Target Start/End: Original strand, 21573011 - 21573082
Alignment:
| Q |
585 |
atggctttacttgtaagcaattaaacatggtttcaagattctgaatg--cagaacctaaggaatatggagca |
654 |
Q |
| |
|
|||||| |||||||||||||| |||| ||| ||||||||| |||||| || |||||||||||||||||||| |
|
|
| T |
21573011 |
atggctatacttgtaagcaataaaacctggattcaagattatgaatgcccataacctaaggaatatggagca |
21573082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 736 - 794
Target Start/End: Complemental strand, 51190372 - 51190314
Alignment:
| Q |
736 |
tttatagttagtgatcattgtaacttgaattccctgcattccacctatagaaacttaag |
794 |
Q |
| |
|
||||||||| ||| |||||||| || | ||||| ||||||||||||||||||||||||| |
|
|
| T |
51190372 |
tttatagtttgtgctcattgtagctaggattccttgcattccacctatagaaacttaag |
51190314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 154 - 240
Target Start/End: Original strand, 5906141 - 5906227
Alignment:
| Q |
154 |
tggttgttccatcatgggcaccacaagttgagattcttggtcatggatcaattggtggttttttgagtcattgtggttggggttcaa |
240 |
Q |
| |
|
||||| |||||||||||||||| || |||| || ||| |||| |||| ||||||| || |||||||||||||||||| |||||| |
|
|
| T |
5906141 |
tggttattccatcatgggcacctcagattgaaatccttagtcacatatcagttggtggattcttgagtcattgtggttggagttcaa |
5906227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 251
Target Start/End: Complemental strand, 15309 - 15188
Alignment:
| Q |
130 |
tggaaagaaccaaagaaaatggattggttgttccatcatgggcaccacaagttgagattcttggtcatggatcaattggtggttttttgagtcattgtgg |
229 |
Q |
| |
|
||||||||||||||||||| || || || | ||||||||||||| |||||||| || ||| ||| | ||| ||||||| ||||| ||||||||||| |
|
|
| T |
15309 |
tggaaagaaccaaagaaaaaggttttattttggcatcatgggcacctcaagttgaaatacttaaacatagttcagttggtggatttttaagtcattgtgg |
15210 |
T |
|
| Q |
230 |
ttggggttcaactttggagagt |
251 |
Q |
| |
|
|||| |||| |||||||||| |
|
|
| T |
15209 |
ttggaattcagttttggagagt |
15188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 251
Target Start/End: Original strand, 57535 - 57656
Alignment:
| Q |
130 |
tggaaagaaccaaagaaaatggattggttgttccatcatgggcaccacaagttgagattcttggtcatggatcaattggtggttttttgagtcattgtgg |
229 |
Q |
| |
|
||||||||||||||||||| || || || | ||||||||||||| |||||||| || ||| ||| | ||| ||||||| ||||| ||||||||||| |
|
|
| T |
57535 |
tggaaagaaccaaagaaaaaggttttattttggcatcatgggcacctcaagttgaaatacttaaacatagttcagttggtggatttttaagtcattgtgg |
57634 |
T |
|
| Q |
230 |
ttggggttcaactttggagagt |
251 |
Q |
| |
|
|||| |||| |||||||||| |
|
|
| T |
57635 |
ttggaattcagttttggagagt |
57656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 275
Target Start/End: Original strand, 13653230 - 13653303
Alignment:
| Q |
202 |
caattggtggttttttgagtcattgtggttggggttcaactttggagagtgtggttaatggtgtgcctatgatt |
275 |
Q |
| |
|
||||||||| |||||||| ||| |||| ||| ||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
13653230 |
caattggtgcttttttgacacatagtggatggaattctactttggagagtgtggtttgtggtgtgcctatgatt |
13653303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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