View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2811R-Insertion-8 (Length: 785)
Name: NF2811R-Insertion-8
Description: NF2811R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2811R-Insertion-8 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 662; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 662; E-Value: 0
Query Start/End: Original strand, 9 - 783
Target Start/End: Original strand, 1701559 - 1702333
Alignment:
| Q |
9 |
cgcggttcaagtaacagtgatctctacacctttcattatatgtctcaatatcaacccactactcttgcttccacctgctctgcctccccttctatatggc |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||| |
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|
| T |
1701559 |
cgcggttcaagtaacagtgatctctacacctttcatcctaagtctcaatatcaacccactgctcttgcttccacctgctccgcctccccttctttatggc |
1701658 |
T |
|
| Q |
109 |
atgctcgtttcgggcatccctctttcagagttcttgcactaatgatgtctagttgtggcagttttaggaacttagaaaatnnnnnnnttcattgtaattc |
208 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||| ||||||||| ||||||||||||| |
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|
| T |
1701659 |
atgctcgtttcggtcatccctctttcagagttcttgcacaaatgatgtctacttgtggcaattttaggaatttagaaaataaaaaatttcattgtaattc |
1701758 |
T |
|
| Q |
209 |
ttgtcatattaataaaagtcataagcttcctttttcagtttcttctatcaaaaccgtagctcctcttgaactgttattttctgatgtttggggaccttct |
308 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
1701759 |
ttgccatattaataaaagtcataagcttcctttttctgtttcttctatcaaaaccacagctcctcttgaactgttattttctgatgtttggggaccctct |
1701858 |
T |
|
| Q |
309 |
cctatcacttcagttaatggttacaaatattatcttgtgtttgttgatcattttactcaatattcttggatttatctgttaaaaagtaaaactgatgttg |
408 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
1701859 |
cctatcacttcagttcatggttacaaatattatcttgtgtttgttgatcattttactcgatattcttggatttatccgttaaaaagtaaaactgatgttg |
1701958 |
T |
|
| Q |
409 |
ttactatatttccaaattttcattcaaaagttgaaactatgttttcatacaaagttaaatccctctacaccgatggtggcactgaatacataaaactcaa |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1701959 |
ttactatatttccaaattttcattcaaaagttgaaactatgttttcatacaaagttaaatccctctacaccgatggtggcactgaatacataaaactcaa |
1702058 |
T |
|
| Q |
509 |
gccatatcttaactctcatggtatatctcacgatatcagcccaccgtacactcccgaacatattggtattgcagaacgcaaacatcgtcatatagtagaa |
608 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1702059 |
gccatatcttaactctcatggtatatctcactatatcagcccaccgtacactcccgaacatattggtattgcagaacgcaaacatcgtcatatagtagaa |
1702158 |
T |
|
| Q |
609 |
acatcgctcaccctcatgtctcactctcatgttccacaaaaattctggtgttatgccttccaaatggcggtgtatttaataaatcgcatgacaacaacac |
708 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
1702159 |
acatcgctcaccctcatgtctcactctcatgttccacaaaaattctggtgttatgccttccaaatggcggtgtatttaataaatcgcatgccaacaacac |
1702258 |
T |
|
| Q |
709 |
atcttaaaaacaaatgtcctaatgaaattctgtttggttccactcctaattatcttaatcttggagtctttggat |
783 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1702259 |
atcttaaaaacaaatgtcctcatgaaattctgtttggttccactcctaattatcttaatcttcgagtctttggat |
1702333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 9 - 311
Target Start/End: Original strand, 181132 - 181434
Alignment:
| Q |
9 |
cgcggttcaagtaacagtgatctctacacctttcattatatgtctcaatatcaacccactactcttgcttccacctgctctgcctccccttctatatggc |
108 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||| |
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|
| T |
181132 |
cgcggttccagtaacagtgatctctacacctttcattatatgtctcaatatcaacccactgctcttgcttccacttgctctgcctcaccttctatatggc |
181231 |
T |
|
| Q |
109 |
atgctcgtttcgggcatccctctttcagagttcttgcactaatgatgtctagttgtggcagttttaggaacttagaaaatnnnnnnnttcattgtaattc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
181232 |
atgctcgtttcgggcatccctctttcagagttcttgcactaatgatgtctagttgtggcaattttaggaacttagaaaataaaaaatttcattgtaattc |
181331 |
T |
|
| Q |
209 |
ttgtcatattaataaaagtcataagcttcctttttcagtttcttctatcaaaaccgtagctcctcttgaactgttattttctgatgtttggggaccttct |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
181332 |
ttgtcatattaataaaagtcataagcttcctttttcagtttcttctatcaaaaccgcagctcctcttgaactgttattttctgatgtttggggaccttct |
181431 |
T |
|
| Q |
309 |
cct |
311 |
Q |
| |
|
||| |
|
|
| T |
181432 |
cct |
181434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 2e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 198 - 676
Target Start/End: Original strand, 5400484 - 5400962
Alignment:
| Q |
198 |
cattgtaattcttgtcatattaataaaagtcataagcttcctttttcagtttcttctatcaaaaccgtagctcctcttgaactgttattttctgatgttt |
297 |
Q |
| |
|
||||||||||| || |||||||||||||||||| ||||||||||| | ||||| || |||| | |||| ||||||| | || |||||||||| |
|
|
| T |
5400484 |
cattgtaattcctgctctattaataaaagtcataaacttcctttttctatatcttcaatacaaactttctctccatttgaactcattttctctgatgttt |
5400583 |
T |
|
| Q |
298 |
ggggaccttctcctatcacttcagttaatggttacaaatattatcttgtgtttgttgatcattttactcaatattcttggatttatctgttaaaaagtaa |
397 |
Q |
| |
|
||||||| || ||||| || || |||||||||||| ||||||||||| |||||||| ||||| |||| || | |||||||||| | |||| || |
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|
| T |
5400584 |
ggggaccatcccctataacgtccattaatggttacaggtattatcttgtctttgttgaccatttcactcgctacacgtggatttatccacttaaaaacaa |
5400683 |
T |
|
| Q |
398 |
aactgatgttgttactatatttccaaattttcattcaaaagttgaaactatgttttcatacaaagttaaatccctctacaccgatggtggcactgaatac |
497 |
Q |
| |
|
||||||||| | || |||||||| | |||||||| ||| |||||| | || || ||||||| ||||| | ||||| |||||||| ||||||||| |
|
|
| T |
5400684 |
aactgatgtagctatcatatttcctcaatttcattctaaaattgaaaactttttctcccacaaagtcaaatctatttacactgatggtggaactgaatac |
5400783 |
T |
|
| Q |
498 |
ataaaactcaagccatatcttaactctcatggtatatctcacgatatcagcccaccgtacactcccgaacatattggtattgcagaacgcaaacatcgtc |
597 |
Q |
| |
|
| ||||||||||||||| | || | ||||| ||||| || | || |||||||| || ||||| ||||| ||||| ||||| ||||||||||| || | |
|
|
| T |
5400784 |
tttaaactcaagccatatttcaatacacatggaatatcccattacattagcccaccttatactcctgaacacattggcattgctgaacgcaaacaccgcc |
5400883 |
T |
|
| Q |
598 |
atatagtagaaacatcgctcaccctcatgtctcactctcatgttccacaaaaattctggtgttatgccttccaaatggc |
676 |
Q |
| |
|
||||||||||||| | ||||| || | ||||||||| ||| || |||| ||||||||||||||| || |||||||| |
|
|
| T |
5400884 |
atatagtagaaactgctctcacacttctctctcactcttctgtacctcaaacattctggtgttatgcttttcaaatggc |
5400962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 2e-36; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 198 - 676
Target Start/End: Original strand, 3541459 - 3541937
Alignment:
| Q |
198 |
cattgtaattcttgtcatattaataaaagtcataagcttcctttttcagtttcttctatcaaaaccgtagctcctcttgaactgttattttctgatgttt |
297 |
Q |
| |
|
||||||||||| || |||||||||||||||||| ||||||||||| | ||||| || |||| | |||| ||||||| | || |||||||||| |
|
|
| T |
3541459 |
cattgtaattcctgctctattaataaaagtcataaacttcctttttctatatcttcaatacaaactttctctccatttgaactcattttctctgatgttt |
3541558 |
T |
|
| Q |
298 |
ggggaccttctcctatcacttcagttaatggttacaaatattatcttgtgtttgttgatcattttactcaatattcttggatttatctgttaaaaagtaa |
397 |
Q |
| |
|
||||||| || ||||| || || | ||||||||||| ||||||||||| |||||||| ||||| |||| || | |||||||||| | |||| || |
|
|
| T |
3541559 |
ggggaccatcccctataacgtccatcaatggttacaagtattatcttgtctttgttgaccatttcactcgctacacgtggatttatccacttaaaaacaa |
3541658 |
T |
|
| Q |
398 |
aactgatgttgttactatatttccaaattttcattcaaaagttgaaactatgttttcatacaaagttaaatccctctacaccgatggtggcactgaatac |
497 |
Q |
| |
|
||||||||| | || |||||||| | |||||||| ||| |||||| | || || ||||||| ||||| | ||||| |||||||| ||||||||| |
|
|
| T |
3541659 |
aactgatgtagctatcatatttcctcaatttcattctaaaattgaaaactttttctcccacaaagtcaaatctatttacactgatggtggaactgaatac |
3541758 |
T |
|
| Q |
498 |
ataaaactcaagccatatcttaactctcatggtatatctcacgatatcagcccaccgtacactcccgaacatattggtattgcagaacgcaaacatcgtc |
597 |
Q |
| |
|
| ||||||||||||||| | || | ||||| ||||| || | || |||||||| || ||||| ||||| ||||| ||||| ||||||||||| || | |
|
|
| T |
3541759 |
tttaaactcaagccatatttcaatacacatggaatatcccattacattagcccaccttatactcctgaacacattggcattgctgaacgcaaacaccgcc |
3541858 |
T |
|
| Q |
598 |
atatagtagaaacatcgctcaccctcatgtctcactctcatgttccacaaaaattctggtgttatgccttccaaatggc |
676 |
Q |
| |
|
||||||||||||| | ||||| || | ||||||||| ||| || |||| ||||||||||||||| || |||||||| |
|
|
| T |
3541859 |
atatagtagaaactgctctcacacttctctctcactcttctgtacctcaaacattctggtgttatgcttttcaaatggc |
3541937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 269 - 399
Target Start/End: Original strand, 31098805 - 31098935
Alignment:
| Q |
269 |
tcctcttgaactgttattttctgatgtttggggaccttctcctatcacttcagttaatggttacaaatattatcttgtgtttgttgatcattttactcaa |
368 |
Q |
| |
|
|||||||||||| | ||||||||||||||| |||| ||||| || | | | | ||| |||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
31098805 |
tcctcttgaactcattttttctgatgtttggagaccctctccaattaacactatcagtggatacaaatattatcttgtgttcgttgatcattttactaga |
31098904 |
T |
|
| Q |
369 |
tattcttggatttatctgttaaaaagtaaaa |
399 |
Q |
| |
|
||| |||||||||| |||||||||||| |
|
|
| T |
31098905 |
tataaatggatttatcccctaaaaagtaaaa |
31098935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 288 - 610
Target Start/End: Complemental strand, 26592600 - 26592278
Alignment:
| Q |
288 |
tctgatgtttggggaccttctcctatcacttcagttaatggttacaaatattatcttgtgtttgttgatcattttactcaatattcttggatttatctgt |
387 |
Q |
| |
|
||||||||||||||||| || ||||| || || |||||||||| | ||| ||||||||||||||||| || |||||| |||| | |||||||||| |
|
|
| T |
26592600 |
tctgatgtttggggaccatcccctataacatccattaatggttatagatactatcttgtgtttgttgaccactttactagatatacatggatttatcctc |
26592501 |
T |
|
| Q |
388 |
taaaaagtaaaactgatgttgttactatatttccaaattttcattcaaaagttgaaactatgttttcatacaaagttaaatccctctacaccgatggtgg |
487 |
Q |
| |
|
| | ||| |||||| |||| || | || || ||| | |||||| | ||| |||||| | | || || |||| || ||||| | ||||| |||||||| |
|
|
| T |
26592500 |
ttagaagcaaaactaatgtagtagccatcttcccacaatttcatactaaaattgaaaatcttttctccaacaaggtaaaatcaatttacacagatggtgg |
26592401 |
T |
|
| Q |
488 |
cactgaatacataaaactcaagccatatcttaactctcatggtatatctcacgatatcagcccaccgtacactcccgaacatattggtattgcagaacgc |
587 |
Q |
| |
|
|||||||| || ||||||| | ||| | || | ||||| ||||| || | || || ||||| |||||||| ||||||||||| |||||||||||| |
|
|
| T |
26592400 |
aactgaatatatctaactcaaatcttatttcaatacacatggaatatcacattacataagtccaccttacactcctgaacatattggcattgcagaacgc |
26592301 |
T |
|
| Q |
588 |
aaacatcgtcatatagtagaaac |
610 |
Q |
| |
|
|||||| | |||||||| ||||| |
|
|
| T |
26592300 |
aaacattgccatatagtcgaaac |
26592278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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