View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2811_1D_high_1 (Length: 1099)

Name: NF2811_1D_high_1
Description: NF2811_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2811_1D_high_1
NF2811_1D_high_1
[»] chr3 (27 HSPs)
chr3 (644-1043)||(47934824-47935223)
chr3 (480-572)||(54308454-54308546)
chr3 (526-573)||(20807937-20807984)
chr3 (500-573)||(18745345-18745418)
chr3 (526-573)||(4706957-4707004)
chr3 (526-573)||(20808608-20808655)
chr3 (526-569)||(33762689-33762732)
chr3 (526-574)||(52924434-52924482)
chr3 (526-573)||(15287567-15287614)
chr3 (526-573)||(49350271-49350318)
chr3 (526-572)||(9830573-9830619)
chr3 (531-573)||(47571196-47571238)
chr3 (531-573)||(49349676-49349718)
chr3 (531-568)||(29516555-29516592)
chr3 (500-568)||(18744625-18744693)
chr3 (531-575)||(53346502-53346546)
chr3 (526-573)||(3584005-3584052)
chr3 (502-573)||(36540008-36540079)
chr3 (531-574)||(53344747-53344790)
chr3 (535-574)||(54753576-54753615)
chr3 (527-573)||(33761970-33762016)
chr3 (531-573)||(47571945-47571987)
chr3 (1042-1076)||(47934750-47934784)
chr3 (501-575)||(48633626-48633700)
chr3 (531-573)||(53343862-53343904)
chr3 (526-571)||(47677523-47677568)
chr3 (538-571)||(48626127-48626160)
[»] chr8 (19 HSPs)
chr8 (213-572)||(33321498-33321856)
chr8 (19-189)||(33321876-33322045)
chr8 (479-573)||(33322157-33322251)
chr8 (526-573)||(16911047-16911094)
chr8 (531-580)||(42094002-42094051)
chr8 (526-574)||(22632969-22633017)
chr8 (526-574)||(26847096-26847144)
chr8 (526-573)||(4402288-4402335)
chr8 (527-574)||(44656319-44656366)
chr8 (526-572)||(22632323-22632369)
chr8 (531-575)||(202575-202619)
chr8 (531-575)||(317412-317456)
chr8 (526-573)||(5434032-5434079)
chr8 (526-573)||(27243446-27243493)
chr8 (526-573)||(27255021-27255068)
chr8 (526-573)||(36182122-36182169)
chr8 (526-568)||(36180692-36180734)
chr8 (534-575)||(42094753-42094794)
chr8 (526-575)||(42663998-42664047)
[»] chr5 (20 HSPs)
chr5 (213-573)||(29595297-29595642)
chr5 (19-189)||(29595114-29595283)
chr5 (479-574)||(29594905-29595000)
chr5 (503-573)||(27345897-27345967)
chr5 (526-573)||(38129126-38129173)
chr5 (535-574)||(39936254-39936293)
chr5 (531-580)||(2029053-2029102)
chr5 (532-572)||(8743108-8743148)
chr5 (479-522)||(7806475-7806518)
chr5 (526-573)||(23253487-23253534)
chr5 (526-573)||(24565573-24565620)
chr5 (526-573)||(24606609-24606656)
chr5 (526-573)||(38129844-38129891)
chr5 (526-573)||(39937907-39937954)
chr5 (531-573)||(40372166-40372208)
chr5 (526-575)||(16195130-16195179)
chr5 (526-575)||(35524120-35524169)
chr5 (526-574)||(39466884-39466932)
chr5 (532-573)||(20476123-20476164)
chr5 (532-573)||(23257319-23257360)
[»] chr7 (24 HSPs)
chr7 (453-573)||(3314955-3315075)
chr7 (225-382)||(3315216-3315373)
chr7 (479-573)||(3315417-3315511)
chr7 (526-574)||(44120357-44120405)
chr7 (526-569)||(1511851-1511894)
chr7 (526-573)||(41965778-41965825)
chr7 (531-574)||(46491694-46491737)
chr7 (531-573)||(767136-767178)
chr7 (531-573)||(17114145-17114187)
chr7 (526-568)||(36611556-36611598)
chr7 (531-573)||(42818559-42818601)
chr7 (526-579)||(24874579-24874632)
chr7 (521-574)||(34808985-34809038)
chr7 (535-571)||(10590978-10591014)
chr7 (526-574)||(28007156-28007204)
chr7 (526-574)||(35892304-35892352)
chr7 (526-573)||(767967-768014)
chr7 (526-573)||(30581267-30581314)
chr7 (526-573)||(36611495-36611542)
chr7 (527-573)||(25903997-25904043)
chr7 (526-571)||(8754175-8754220)
chr7 (531-572)||(10590299-10590340)
chr7 (537-574)||(41965111-41965148)
chr7 (534-571)||(44876943-44876980)
[»] chr1 (23 HSPs)
chr1 (472-574)||(27745555-27745657)
chr1 (472-569)||(32772104-32772201)
chr1 (479-574)||(11937697-11937795)
chr1 (526-581)||(24848427-24848482)
chr1 (526-574)||(26240872-26240920)
chr1 (526-573)||(24847783-24847830)
chr1 (531-573)||(16449555-16449597)
chr1 (531-573)||(16459129-16459171)
chr1 (472-569)||(2260857-2260954)
chr1 (472-572)||(6942191-6942291)
chr1 (526-574)||(26240113-26240161)
chr1 (536-572)||(42345867-42345903)
chr1 (526-573)||(12449313-12449360)
chr1 (504-567)||(16450444-16450507)
chr1 (504-567)||(16460020-16460083)
chr1 (535-574)||(21257927-21257966)
chr1 (526-573)||(50657142-50657189)
chr1 (535-573)||(27746168-27746206)
chr1 (531-573)||(31109239-31109281)
chr1 (531-573)||(31116690-31116732)
chr1 (76-161)||(11938145-11938230)
chr1 (532-569)||(14166914-14166951)
chr1 (537-574)||(19930895-19930931)
[»] chr4 (28 HSPs)
chr4 (480-573)||(56226462-56226555)
chr4 (526-578)||(14527577-14527629)
chr4 (531-573)||(52129421-52129463)
chr4 (500-573)||(56227030-56227103)
chr4 (526-574)||(6258147-6258195)
chr4 (526-573)||(24666129-24666176)
chr4 (526-569)||(36253491-36253534)
chr4 (526-572)||(20143280-20143326)
chr4 (536-574)||(34941501-34941539)
chr4 (526-575)||(13925650-13925699)
chr4 (526-574)||(26354233-26354281)
chr4 (526-573)||(6057000-6057047)
chr4 (526-573)||(13924793-13924840)
chr4 (526-569)||(18363654-18363697)
chr4 (526-573)||(21837389-21837436)
chr4 (531-574)||(34450814-34450857)
chr4 (526-569)||(36599231-36599274)
chr4 (534-573)||(42792775-42792814)
chr4 (526-573)||(51386456-51386503)
chr4 (527-573)||(21527027-21527073)
chr4 (527-569)||(26393400-26393442)
chr4 (531-573)||(34451443-34451485)
chr4 (531-573)||(47157385-47157427)
chr4 (538-575)||(24666865-24666902)
chr4 (526-571)||(25056294-25056339)
chr4 (526-571)||(38519188-38519233)
chr4 (531-568)||(47156638-47156675)
chr4 (526-571)||(53778416-53778461)
[»] chr2 (12 HSPs)
chr2 (526-574)||(20606922-20606970)
chr2 (531-574)||(127741-127784)
chr2 (526-573)||(30201989-30202036)
chr2 (531-573)||(18537499-18537541)
chr2 (525-573)||(7754967-7755015)
chr2 (526-574)||(10173935-10173983)
chr2 (526-573)||(1141300-1141347)
chr2 (531-574)||(6873521-6873564)
chr2 (532-570)||(23458631-23458669)
chr2 (526-572)||(34595935-34595981)
chr2 (534-568)||(44297423-44297457)
chr2 (526-575)||(29388949-29388998)
[»] chr6 (5 HSPs)
chr6 (479-522)||(8555064-8555107)
chr6 (526-574)||(13084880-13084928)
chr6 (526-573)||(16718995-16719042)
chr6 (526-575)||(2138475-2138524)
chr6 (526-575)||(34423572-34423621)
[»] scaffold0627 (1 HSPs)
scaffold0627 (534-574)||(6463-6503)
[»] scaffold0002 (1 HSPs)
scaffold0002 (511-568)||(97209-97266)


Alignment Details
Target: chr3 (Bit Score: 372; Significance: 0; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 644 - 1043
Target Start/End: Complemental strand, 47935223 - 47934824
Alignment:
Q  644 agtggtactctaactaaaacaacatatgaagcaccaatagtactctactatgcaaaaatcgaacaaagcaaaccaccaaaaactacctaccaatacattt 743  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  47935223 agtggtagtctaactaaaacaacagatgaagcaccaatagtactctactatgcaaaaaacgaacaaagcaaaccaccaaaaactacctaccaatacattt 47935124  T
Q  744 caaagagttaatgtgccagtcaaataatacaaatatggatagctcacccctttccccatataccgattccacgacaaacacttaattgattccactccac 843  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47935123 caaagagttaatgtgccagtcaaataatacaaacatggatagctcacccctttccccatataccgattccacgacaaacacttaattgattccactccac 47935024  T
Q  844 cacatccgccgccttggagcacatcgaagcgaaattaagatcattcttagcctttcaaatggaccaaagcgtagtgcgccaaatcaacaacaagcctttc 943  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  47935023 cacatccgccgccttggagcacatcgaagcgaaattaagatcattcttagcctttaaaatggaccaaagcgtagtgcgccaaatcaacaacaagcctttc 47934924  T
Q  944 ctgatctacccctttggccacatcgagcaagcaactccaataacggggaaacgtcccatggagcacctgagacaaacctatccatgtaataaccatgttc 1043  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  47934923 ctgatctaccgctttggccacatcgagcaagcaactccaataacggggaaacgtcccatggagcacctgagacaaacctatccaagtaataaccatgttc 47934824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 480 - 572
Target Start/End: Complemental strand, 54308546 - 54308454
Alignment:
Q  480 aataatgagatcttatagtcttatttaatccaatggtcaaataaactggtacaccggtgagggacttaattgaaccctcaccttagaatccac 572  Q
    ||||||||||||  ||||  |||||||||| || |||||||  || |||| ||||||||||||||||||||||||||||||| ||||||||||    
T  54308546 aataatgagatcaaataggattatttaatctaacggtcaaaataagtggttcaccggtgagggacttaattgaaccctcaccctagaatccac 54308454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 526 - 573
Target Start/End: Complemental strand, 20807984 - 20807937
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatccacc 573  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||    
T  20807984 tggtacaccggtgagggacttaattgaaccctcaccctagaatccacc 20807937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 500 - 573
Target Start/End: Original strand, 18745345 - 18745418
Alignment:
Q  500 ttatttaatccaatggtcaaataaactggtacaccggtgagggacttaattgaaccctcaccttagaatccacc 573  Q
    |||||||||| |||||||||||  | |||| |||||||||||||||| |||||||||||||| |||||| ||||    
T  18745345 ttatttaatctaatggtcaaattcagtggtgcaccggtgagggacttgattgaaccctcaccctagaattcacc 18745418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 526 - 573
Target Start/End: Original strand, 4706957 - 4707004
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatccacc 573  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||    
T  4706957 tggtacaccggtgagggacttaatagaaccctcaccctagaatccacc 4707004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 526 - 573
Target Start/End: Original strand, 20808608 - 20808655
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatccacc 573  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||    
T  20808608 tggtacaccggtgagggacttacttgaaccctcaccctagaatccacc 20808655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 526 - 569
Target Start/End: Original strand, 33762689 - 33762732
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatc 569  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  33762689 tggtacaccggtgagggacttaatagaaccctcaccttagaatc 33762732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 526 - 574
Target Start/End: Original strand, 52924434 - 52924482
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatccacct 574  Q
    |||| |||||||||||||||||||||  |||||||||||||||||||||    
T  52924434 tggtgcaccggtgagggacttaattgctccctcaccttagaatccacct 52924482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 526 - 573
Target Start/End: Complemental strand, 15287614 - 15287567
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatccacc 573  Q
    |||| ||||||||||||||||||||| ||||||||| |||||||||||    
T  15287614 tggtccaccggtgagggacttaattggaccctcaccctagaatccacc 15287567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 526 - 573
Target Start/End: Original strand, 49350271 - 49350318
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatccacc 573  Q
    |||| |||||| |||||||||||||||||||||||| |||||||||||    
T  49350271 tggttcaccggcgagggacttaattgaaccctcaccctagaatccacc 49350318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 526 - 572
Target Start/End: Complemental strand, 9830619 - 9830573
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatccac 572  Q
    |||| |||||||||||||||||||||||||||||||  |||||||||    
T  9830619 tggtccaccggtgagggacttaattgaaccctcacccgagaatccac 9830573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 531 - 573
Target Start/End: Complemental strand, 47571238 - 47571196
Alignment:
Q  531 caccggtgagggacttaattgaaccctcaccttagaatccacc 573  Q
    |||||||||||||||||||||| |||||||| |||||||||||    
T  47571238 caccggtgagggacttaattgatccctcaccctagaatccacc 47571196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 531 - 573
Target Start/End: Complemental strand, 49349718 - 49349676
Alignment:
Q  531 caccggtgagggacttaattgaaccctcaccttagaatccacc 573  Q
    |||||||||||||||||||||| |||||||| |||||||||||    
T  49349718 caccggtgagggacttaattgatccctcaccctagaatccacc 49349676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 531 - 568
Target Start/End: Original strand, 29516555 - 29516592
Alignment:
Q  531 caccggtgagggacttaattgaaccctcaccttagaat 568  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  29516555 caccggtgagggacttaattgaaccctcaccgtagaat 29516592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 500 - 568
Target Start/End: Complemental strand, 18744693 - 18744625
Alignment:
Q  500 ttatttaatccaatggtcaaataaactggtacaccggtgagggacttaattgaaccctcaccttagaat 568  Q
    |||||||||| |||||||||||  | |||| |||||||||||||||| ||| |||||||| | ||||||    
T  18744693 ttatttaatctaatggtcaaatttagtggtgcaccggtgagggacttgattaaaccctcatcctagaat 18744625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 531 - 575
Target Start/End: Original strand, 53346502 - 53346546
Alignment:
Q  531 caccggtgagggacttaattgaaccctcaccttagaatccacctt 575  Q
    ||||||||||||||||||||||||||||||  |||||| ||||||    
T  53346502 caccggtgagggacttaattgaaccctcactgtagaattcacctt 53346546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 526 - 573
Target Start/End: Complemental strand, 3584052 - 3584005
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatccacc 573  Q
    |||||||||||||||||| |||||||  |||||||| |||||||||||    
T  3584052 tggtacaccggtgagggatttaattgctccctcaccctagaatccacc 3584005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 502 - 573
Target Start/End: Original strand, 36540008 - 36540079
Alignment:
Q  502 atttaatccaatggtcaaataaactggtacaccggtgagggacttaattgaaccctcaccttagaatccacc 573  Q
    |||||||| |||||| ||| | | |||||| ||||||||||| | ||||||||||||||| |||| ||||||    
T  36540008 atttaatctaatggtaaaaaagagtggtacgccggtgagggattcaattgaaccctcaccctagagtccacc 36540079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 531 - 574
Target Start/End: Original strand, 53344747 - 53344790
Alignment:
Q  531 caccggtgagggacttaattgaaccctcaccttagaatccacct 574  Q
    |||||||||||||||| ||||| |||||||| ||||||||||||    
T  53344747 caccggtgagggacttgattgatccctcaccctagaatccacct 53344790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 535 - 574
Target Start/End: Complemental strand, 54753615 - 54753576
Alignment:
Q  535 ggtgagggacttaattgaaccctcaccttagaatccacct 574  Q
    ||||||||||||||||||||||||||| |||||| |||||    
T  54753615 ggtgagggacttaattgaaccctcaccgtagaattcacct 54753576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 527 - 573
Target Start/End: Complemental strand, 33762016 - 33761970
Alignment:
Q  527 ggtacaccggtgagggacttaattgaaccctcaccttagaatccacc 573  Q
    ||||||||||||||| ||||||| || |||||||| |||||||||||    
T  33762016 ggtacaccggtgaggaacttaatagagccctcaccctagaatccacc 33761970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 531 - 573
Target Start/End: Original strand, 47571945 - 47571987
Alignment:
Q  531 caccggtgagggacttaattgaaccctcaccttagaatccacc 573  Q
    |||||||||||||||||||||| |||||||| |||||| ||||    
T  47571945 caccggtgagggacttaattgatccctcaccctagaattcacc 47571987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1042 - 1076
Target Start/End: Complemental strand, 47934784 - 47934750
Alignment:
Q  1042 tcttccgtctcactaagtacaccatgacacctcac 1076  Q
    ||||||||||||||||||||||||||||| |||||    
T  47934784 tcttccgtctcactaagtacaccatgacatctcac 47934750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 501 - 575
Target Start/End: Complemental strand, 48633700 - 48633626
Alignment:
Q  501 tatttaatccaatggtcaaataaactggtacaccggtgagggacttaattgaaccctcaccttagaatccacctt 575  Q
    ||||||||| |||||||||||  | |||| || | ||||| ||||| ||||||||||||||||| ||| ||||||    
T  48633700 tatttaatctaatggtcaaatttagtggtgcatcagtgagagacttgattgaaccctcaccttaaaattcacctt 48633626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 531 - 573
Target Start/End: Original strand, 53343862 - 53343904
Alignment:
Q  531 caccggtgagggacttaattgaaccctcaccttagaatccacc 573  Q
    ||||||||||||||||  ||||||||||||| |||||||||||    
T  53343862 caccggtgagggacttgtttgaaccctcaccctagaatccacc 53343904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 526 - 571
Target Start/End: Complemental strand, 47677568 - 47677523
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatcca 571  Q
    |||| |||| |||||||||||||||||||||||| | |||||||||    
T  47677568 tggttcaccagtgagggacttaattgaaccctcatcctagaatcca 47677523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 538 - 571
Target Start/End: Original strand, 48626127 - 48626160
Alignment:
Q  538 gagggacttaattgaaccctcaccttagaatcca 571  Q
    |||||||||||||||||||||||| |||||||||    
T  48626127 gagggacttaattgaaccctcaccctagaatcca 48626160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 320; Significance: 1e-180; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 213 - 572
Target Start/End: Complemental strand, 33321856 - 33321498
Alignment:
Q  213 gtattagtcatgtatggtttgttgtttatgaaattgatagcttctaccctttagcatcctaaccaaaagccaaggagaaacattgttgaacaactcaata 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  33321856 gtattagtcatgtatggtttgttgtttatgaaattgatagcttctaccctt-agcatcctaaccaaatgccaaggagaaacattgttgaacaactcaata 33321758  T
Q  313 aggtaatgaaagggtttacgtgtgaaatcaggagtaaatatttgtatctggtggtgtaacaaacagagcctggagcatggagccgacgatggttgtgttg 412  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||    
T  33321757 acgtaatgaaagggtttacgtgtgaaatcaggagtaaatatttgtatctggtggtgtaacaaacagagcctggagcctggagccgacgatggttgtggtg 33321658  T
Q  413 cggccaaatgtgtgccaggcgagaaaagaactactagttagaggagattttatctagtatggttataaataatgagatcttatagtcttatttaatccaa 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33321657 cggccaaatgtgtgccaggcgagaaaagaactactagttagaggagattttatctagtatggttataaataatgagatcttatagtcttatttaatccaa 33321558  T
Q  513 tggtcaaataaactggtacaccggtgagggacttaattgaaccctcaccttagaatccac 572  Q
    |||||||||||| ||||||| | |||||||||||||||||||| ||||||||||||||||    
T  33321557 tggtcaaataaattggtacatcagtgagggacttaattgaaccatcaccttagaatccac 33321498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 33322045 - 33321876
Alignment:
Q  19 acatcaaataaaagacgtttagggaaattttaagaaagnnnnnnnttgaagaaaagtaaagagggattttgaccgttactccgtcgatgaattcaagtaa 118  Q
    ||||||||||||||||||||||||||||||||||||||       ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||    
T  33322045 acatcaaataaaagacgtttagggaaattttaagaaagaaaaaaattgaagaaa-gtaaagagggattttgaccgttactccgtcgatgaattcaaataa 33321947  T
Q  119 aaatatgttttcaaatgggtatttacatgaattaggaataacagaaaacaattcaaacgtaggaattaggc 189  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  33321946 aaatatgttttcaaatgggtatttatatgaattaggaataacagaaaacaattcaaacgtaggaattaggc 33321876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 479 - 573
Target Start/End: Original strand, 33322157 - 33322251
Alignment:
Q  479 aaataatgagatcttatagtcttatttaatccaatggtcaaataaactggtacaccggtgagggacttaattgaaccctcaccttagaatccacc 573  Q
    |||||||||| || |||  ||||||||||||||||||||||||||| | ||||||  ||||||||  |||||||||||||| | |||||||||||    
T  33322157 aaataatgagttcatatgttcttatttaatccaatggtcaaataaagttgtacacatgtgagggatataattgaaccctcatcctagaatccacc 33322251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 526 - 573
Target Start/End: Original strand, 16911047 - 16911094
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatccacc 573  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||||    
T  16911047 tggtacaccggtgagggacttaattgagccctcaccctagaatccacc 16911094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 531 - 580
Target Start/End: Complemental strand, 42094051 - 42094002
Alignment:
Q  531 caccggtgagggacttaattgaaccctcaccttagaatccaccttgtttt 580  Q
    |||||||||||||||||||||| |||||||| ||||||||||||| ||||    
T  42094051 caccggtgagggacttaattgatccctcaccctagaatccaccttttttt 42094002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 526 - 574
Target Start/End: Original strand, 22632969 - 22633017
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatccacct 574  Q
    |||| |||||||||||||||||||||| |||||||| ||||||||||||    
T  22632969 tggtccaccggtgagggacttaattgatccctcaccctagaatccacct 22633017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 526 - 574
Target Start/End: Complemental strand, 26847144 - 26847096
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatccacct 574  Q
    |||| ||||||||||||||||||||| ||||||||| ||||||||||||    
T  26847144 tggttcaccggtgagggacttaattggaccctcaccctagaatccacct 26847096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 526 - 573
Target Start/End: Original strand, 4402288 - 4402335
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatccacc 573  Q
    |||| ||||||||||||||||||| ||||||||||| |||||||||||    
T  4402288 tggttcaccggtgagggacttaatagaaccctcaccctagaatccacc 4402335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 527 - 574
Target Start/End: Original strand, 44656319 - 44656366
Alignment:
Q  527 ggtacaccggtgagggacttaattgaaccctcaccttagaatccacct 574  Q
    |||||| ||||||||||||||||||  |||||||||||||||||||||    
T  44656319 ggtacatcggtgagggacttaattgctccctcaccttagaatccacct 44656366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 526 - 572
Target Start/End: Complemental strand, 22632369 - 22632323
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatccac 572  Q
    |||| |||||||||||||||||||||| |||||||| ||||||||||    
T  22632369 tggtccaccggtgagggacttaattgatccctcaccctagaatccac 22632323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 531 - 575
Target Start/End: Complemental strand, 202619 - 202575
Alignment:
Q  531 caccggtgagggacttaattgaaccctcaccttagaatccacctt 575  Q
    ||||||||||||||||||||||||||||| | |||||| ||||||    
T  202619 caccggtgagggacttaattgaaccctcatcctagaattcacctt 202575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 531 - 575
Target Start/End: Complemental strand, 317456 - 317412
Alignment:
Q  531 caccggtgagggacttaattgaaccctcaccttagaatccacctt 575  Q
    ||||||||||||||||||||||||||||| | |||||| ||||||    
T  317456 caccggtgagggacttaattgaaccctcatcctagaattcacctt 317412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 526 - 573
Target Start/End: Complemental strand, 5434079 - 5434032
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatccacc 573  Q
    |||| ||||||||| ||||||||||| ||||||||| |||||||||||    
T  5434079 tggtccaccggtgaaggacttaattggaccctcaccctagaatccacc 5434032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 526 - 573
Target Start/End: Complemental strand, 27243493 - 27243446
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatccacc 573  Q
    |||| |||||||||||||||||||||| ||||| ||||| ||||||||    
T  27243493 tggtccaccggtgagggacttaattgatccctcgccttataatccacc 27243446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 526 - 573
Target Start/End: Complemental strand, 27255068 - 27255021
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatccacc 573  Q
    |||| |||||||||||||||||||||| ||||| ||||| ||||||||    
T  27255068 tggtccaccggtgagggacttaattgatccctcgccttataatccacc 27255021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 526 - 573
Target Start/End: Original strand, 36182122 - 36182169
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatccacc 573  Q
    |||| |||||||||||||||||||||||||||| || |||||| ||||    
T  36182122 tggttcaccggtgagggacttaattgaaccctcgccatagaattcacc 36182169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 526 - 568
Target Start/End: Complemental strand, 36180734 - 36180692
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaat 568  Q
    |||| |||||||||||||||||||| |||||||||| ||||||    
T  36180734 tggttcaccggtgagggacttaattaaaccctcaccctagaat 36180692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 534 - 575
Target Start/End: Original strand, 42094753 - 42094794
Alignment:
Q  534 cggtgagggacttaattgaaccctcaccttagaatccacctt 575  Q
    ||||||||||||||||||| |||||||| |||||| ||||||    
T  42094753 cggtgagggacttaattgatccctcaccctagaattcacctt 42094794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 526 - 575
Target Start/End: Original strand, 42663998 - 42664047
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatccacctt 575  Q
    |||| |||| |||||||||||||||||||||||||| || ||| ||||||    
T  42663998 tggtccaccagtgagggacttaattgaaccctcaccctaaaattcacctt 42664047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 257; Significance: 1e-142; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-142
Query Start/End: Original strand, 213 - 573
Target Start/End: Original strand, 29595297 - 29595642
Alignment:
Q  213 gtattagtcatgtatggtttgttgtttatgaaattgatagcttctaccctttagcatcctaaccaaaagccaaggagaaacattgttgaacaactcaata 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  29595297 gtattagtcatgtatggtttgttgtttatgaaattgatagcttctaccctt-agtatcctaaccaaaagccaaggagaaacattgttgaacaactcaata 29595395  T
Q  313 aggtaatgaaagggtttacgtgtgaaatcaggagtaaatatttgtatctggtggtgtaacaaacagagcctggagcatggagccgacgatggttgtgttg 412  Q
    | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||       ||||||||||| |||||||||||    
T  29595396 acgtaatgaaagggtttacgtgtgaaatcagtagtaaatatttgtatctggtggtgtaacaaatagagcc-------tggagccgacggtggttgtgttg 29595488  T
Q  413 cggccaaatgtgtgccaggcgagaaaagaactactagttagaggagattttatctagtatggttataaataatgagatcttatagtcttatttaatccaa 512  Q
    |||||||||       |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  29595489 cggccaaat-------aggcgagaaaagaactactagttataggatattttatctagtatggttataaataatgagatcttatagtcttatttaatctaa 29595581  T
Q  513 tggtcaaataaactggtacaccggtgagggacttaattgaaccctcaccttagaatccacc 573  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||    
T  29595582 tggtcaaataaactggtacactggtgagggacttaattgaaccctcacgctagaatccacc 29595642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 19 - 189
Target Start/End: Original strand, 29595114 - 29595283
Alignment:
Q  19 acatcaaataaaagacgtttagggaaattttaagaaagnnnnnnnttgaagaaaagtaaagagggattttgaccgttactccgtcgatgaattcaagtaa 118  Q
    ||||||||||||||||||||||||||||||||||||||       ||||||||| |||||||||||||||||  ||||||||||||||||||||||||||    
T  29595114 acatcaaataaaagacgtttagggaaattttaagaaagaaaaaaattgaagaaa-gtaaagagggattttgagtgttactccgtcgatgaattcaagtaa 29595212  T
Q  119 aaatatgttttcaaatgggtatttacatgaattaggaataacagaaaacaattcaaacgtaggaattaggc 189  Q
    ||||||||||||||||| ||||||| ||||| ||||||||| |||||||||||||||||||||| ||||||    
T  29595213 aaatatgttttcaaatgagtatttatatgaaataggaataagagaaaacaattcaaacgtaggatttaggc 29595283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 479 - 574
Target Start/End: Complemental strand, 29595000 - 29594905
Alignment:
Q  479 aaataatgagatcttatagtcttatttaatccaatggtcaaataaactggtacaccggtgagggacttaattgaaccctcaccttagaatccacct 574  Q
    |||||||||| || ||| ||||||||||||||||||  |||||||| ||||||| |||||| | ||||||||||||||||||| ||||||||||||    
T  29595000 aaataatgagttcatatggtcttatttaatccaatgaccaaataaagtggtacatcggtgaagaacttaattgaaccctcaccctagaatccacct 29594905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 503 - 573
Target Start/End: Original strand, 27345897 - 27345967
Alignment:
Q  503 tttaatccaatggtcaaataaactggtacaccggtgagggacttaattgaaccctcaccttagaatccacc 573  Q
    |||||||||||| |||||  || ||||| | |||||||||||||||||||||||||||| |||||||||||    
T  27345897 tttaatccaatgatcaaaataagtggtatatcggtgagggacttaattgaaccctcaccctagaatccacc 27345967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 526 - 573
Target Start/End: Complemental strand, 38129173 - 38129126
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatccacc 573  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||    
T  38129173 tggtacaccggtgagggacttaattgctccctcaccttagaatccacc 38129126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 535 - 574
Target Start/End: Complemental strand, 39936293 - 39936254
Alignment:
Q  535 ggtgagggacttaattgaaccctcaccttagaatccacct 574  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  39936293 ggtgagggacttaattgaaccctcaccttagaatccacct 39936254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 531 - 580
Target Start/End: Original strand, 2029053 - 2029102
Alignment:
Q  531 caccggtgagggacttaattgaaccctcaccttagaatccaccttgtttt 580  Q
    |||||||||||||||||||||| |||||||| ||||||||||||| ||||    
T  2029053 caccggtgagggacttaattgagccctcaccctagaatccaccttttttt 2029102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 532 - 572
Target Start/End: Original strand, 8743108 - 8743148
Alignment:
Q  532 accggtgagggacttaattgaaccctcaccttagaatccac 572  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  8743108 accggtgagggacttaattgaaccttcaccttagaatccac 8743148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 479 - 522
Target Start/End: Complemental strand, 7806518 - 7806475
Alignment:
Q  479 aaataatgagatcttatagtcttatttaatccaatggtcaaata 522  Q
    |||||| |||||| ||||||||||||||||||||||||||||||    
T  7806518 aaataaggagatcctatagtcttatttaatccaatggtcaaata 7806475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 526 - 573
Target Start/End: Original strand, 23253487 - 23253534
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatccacc 573  Q
    |||| ||||||||||||||||||||| ||||||||| |||||||||||    
T  23253487 tggttcaccggtgagggacttaattggaccctcaccctagaatccacc 23253534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 526 - 573
Target Start/End: Complemental strand, 24565620 - 24565573
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatccacc 573  Q
    |||| ||||||||||||| ||||||||||||||||| |||||||||||    
T  24565620 tggtccaccggtgagggatttaattgaaccctcaccctagaatccacc 24565573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 526 - 573
Target Start/End: Complemental strand, 24606656 - 24606609
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatccacc 573  Q
    |||| ||||||||||||| ||||||||||||||||| |||||||||||    
T  24606656 tggtccaccggtgagggatttaattgaaccctcaccctagaatccacc 24606609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 526 - 573
Target Start/End: Original strand, 38129844 - 38129891
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatccacc 573  Q
    ||||||||||||||||||||||||||  ||||||||||| ||||||||    
T  38129844 tggtacaccggtgagggacttaattgttccctcaccttaaaatccacc 38129891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 526 - 573
Target Start/End: Original strand, 39937907 - 39937954
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatccacc 573  Q
    |||| |||||||||||||||||| |||||||||||| |||||||||||    
T  39937907 tggtccaccggtgagggacttaactgaaccctcaccctagaatccacc 39937954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 531 - 573
Target Start/End: Original strand, 40372166 - 40372208
Alignment:
Q  531 caccggtgagggacttaattgaaccctcaccttagaatccacc 573  Q
    ||||||||||| ||||||||||||||||||| |||||||||||    
T  40372166 caccggtgaggaacttaattgaaccctcaccctagaatccacc 40372208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 526 - 575
Target Start/End: Original strand, 16195130 - 16195179
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatccacctt 575  Q
    ||||||||| |||| |||||||||||| |||||||| |||||||||||||    
T  16195130 tggtacaccagtgatggacttaattgatccctcaccctagaatccacctt 16195179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 526 - 575
Target Start/End: Complemental strand, 35524169 - 35524120
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatccacctt 575  Q
    |||| |||||||||||||||||||||||| |||| | |||||||||||||    
T  35524169 tggtccaccggtgagggacttaattgaactctcatcctagaatccacctt 35524120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 526 - 574
Target Start/End: Complemental strand, 39466932 - 39466884
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatccacct 574  Q
    |||| ||||||||||||||||||||| ||||||||| |||||| |||||    
T  39466932 tggtccaccggtgagggacttaattggaccctcaccctagaattcacct 39466884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 532 - 573
Target Start/End: Original strand, 20476123 - 20476164
Alignment:
Q  532 accggtgagggacttaattgaaccctcaccttagaatccacc 573  Q
    ||||||||||||||||||||| |||||||| || ||||||||    
T  20476123 accggtgagggacttaattgatccctcaccctaaaatccacc 20476164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 532 - 573
Target Start/End: Complemental strand, 23257360 - 23257319
Alignment:
Q  532 accggtgagggacttaattgaaccctcaccttagaatccacc 573  Q
    |||||||||||||||||||| ||||||||  |||||||||||    
T  23257360 accggtgagggacttaattggaccctcactctagaatccacc 23257319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 4e-35; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 4e-35
Query Start/End: Original strand, 453 - 573
Target Start/End: Complemental strand, 3315075 - 3314955
Alignment:
Q  453 gaggagattttatctagtatggttataaataatgagatcttatagtcttatttaatccaatggtcaaataaactggtacaccggtgagggacttaattga 552  Q
    |||||||||||||  ||| |||||||||||||||||||  ||| || | ||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  3315075 gaggagattttattcagtgtggttataaataatgagatagtatggtttcatttaatccaatggttaaataaagtggtacaccggtgagggacttaattga 3314976  T
Q  553 accctcaccttagaatccacc 573  Q
    ||||||||| |||||||||||    
T  3314975 accctcaccgtagaatccacc 3314955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 225 - 382
Target Start/End: Complemental strand, 3315373 - 3315216
Alignment:
Q  225 tatggtttgttgtttatgaaattgatagcttctaccctttagcatcctaacc-aaaagccaaggagaaacattgttgaacaactcaataaggtaatgaaa 323  Q
    |||| |||||||||||||||||||||| |||||  ||  |||| || ||||| |||||| ||||||||||||||||||| |||||||||| |||||||||    
T  3315373 tatgttttgttgtttatgaaattgatatcttct-gccggtagcttcgtaaccaaaaagctaaggagaaacattgttgaataactcaataacgtaatgaaa 3315275  T
Q  324 gggtttacgtgtgaaatcaggagtaaatatttgtatctggtggtgtaacaaacagagcc 382  Q
    ||||| |  |||||||||||  |||||||||||||  |||| ||| |||||| ||||||    
T  3315274 gggttgatatgtgaaatcagaggtaaatatttgtacgtggtcgtggaacaaatagagcc 3315216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 479 - 573
Target Start/End: Original strand, 3315417 - 3315511
Alignment:
Q  479 aaataatgagatcttatagtcttatttaatccaatggtcaaataaactggtacaccggtgagggacttaattgaaccctcaccttagaatccacc 573  Q
    |||||||||| || ||| |||||||||||||| ||||| |||| || || || ||||||||||||||||||||| ||||||||||||||||||||    
T  3315417 aaataatgagttcatatggtcttatttaatccgatggttaaattaagtgttataccggtgagggacttaattgagccctcaccttagaatccacc 3315511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 526 - 574
Target Start/End: Complemental strand, 44120405 - 44120357
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatccacct 574  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||    
T  44120405 tggtacaccggtgagggacttaattgctccctcaccttagaatccacct 44120357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 526 - 569
Target Start/End: Complemental strand, 1511894 - 1511851
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatc 569  Q
    |||||||||||||||||||||||| ||||| |||||||||||||    
T  1511894 tggtacaccggtgagggacttaatagaaccatcaccttagaatc 1511851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 526 - 573
Target Start/End: Original strand, 41965778 - 41965825
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatccacc 573  Q
    |||| ||||||||||||||||||||| ||||||||| |||||||||||    
T  41965778 tggtccaccggtgagggacttaattggaccctcaccctagaatccacc 41965825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 531 - 574
Target Start/End: Original strand, 46491694 - 46491737
Alignment:
Q  531 caccggtgagggacttaattgaaccctcaccttagaatccacct 574  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||    
T  46491694 caccggtgagggacttagttgaaccctcaccctagaatccacct 46491737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 531 - 573
Target Start/End: Complemental strand, 767178 - 767136
Alignment:
Q  531 caccggtgagggacttaattgaaccctcaccttagaatccacc 573  Q
    ||||||||||||||||||||| ||||||||| |||||||||||    
T  767178 caccggtgagggacttaattggaccctcaccctagaatccacc 767136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 531 - 573
Target Start/End: Complemental strand, 17114187 - 17114145
Alignment:
Q  531 caccggtgagggacttaattgaaccctcaccttagaatccacc 573  Q
    ||||| ||||||||||||||||||||||||| |||||||||||    
T  17114187 caccgatgagggacttaattgaaccctcaccctagaatccacc 17114145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 526 - 568
Target Start/End: Complemental strand, 36611598 - 36611556
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaat 568  Q
    |||| ||||||||||||||||||||||||||||||| ||||||    
T  36611598 tggttcaccggtgagggacttaattgaaccctcaccctagaat 36611556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 531 - 573
Target Start/End: Original strand, 42818559 - 42818601
Alignment:
Q  531 caccggtgagggacttaattgaaccctcaccttagaatccacc 573  Q
    ||||||||||||||||||||||||||||||| |||||| ||||    
T  42818559 caccggtgagggacttaattgaaccctcaccctagaattcacc 42818601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 526 - 579
Target Start/End: Original strand, 24874579 - 24874632
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatccaccttgttt 579  Q
    |||| ||||| |||||||| |||||||||||||||| |||||||||||| ||||    
T  24874579 tggtccaccgatgagggacctaattgaaccctcaccctagaatccacctagttt 24874632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 521 - 574
Target Start/End: Original strand, 34808985 - 34809038
Alignment:
Q  521 taaactggtacaccggtgagggacttaattgaaccctcaccttagaatccacct 574  Q
    |||| |||||||||| ||| ||||||||||||||||||||  ||||||||||||    
T  34808985 taaagtggtacaccgatgaaggacttaattgaaccctcactctagaatccacct 34809038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 535 - 571
Target Start/End: Original strand, 10590978 - 10591014
Alignment:
Q  535 ggtgagggacttaattgaaccctcaccttagaatcca 571  Q
    ||||||||| |||||||||||||||||||||||||||    
T  10590978 ggtgagggagttaattgaaccctcaccttagaatcca 10591014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 526 - 574
Target Start/End: Complemental strand, 28007204 - 28007156
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatccacct 574  Q
    |||| |||||||||||||||||||||  |||||||| ||||||||||||    
T  28007204 tggtccaccggtgagggacttaattgctccctcaccctagaatccacct 28007156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 526 - 574
Target Start/End: Original strand, 35892304 - 35892352
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatccacct 574  Q
    |||||||||||||||||| |||||||  |||||||| ||||||||||||    
T  35892304 tggtacaccggtgagggatttaattgctccctcaccctagaatccacct 35892352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 526 - 573
Target Start/End: Original strand, 767967 - 768014
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatccacc 573  Q
    |||| ||||||||||||||||||||| ||||||||| || ||||||||    
T  767967 tggtccaccggtgagggacttaattggaccctcaccctaaaatccacc 768014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 526 - 573
Target Start/End: Original strand, 30581267 - 30581314
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatccacc 573  Q
    |||| ||| ||||||||||||||||||||||||||| |||||| ||||    
T  30581267 tggttcactggtgagggacttaattgaaccctcaccctagaattcacc 30581314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 526 - 573
Target Start/End: Original strand, 36611495 - 36611542
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatccacc 573  Q
    |||| |||||||||| || ||||||||||||||||| |||||||||||    
T  36611495 tggtccaccggtgagagatttaattgaaccctcaccctagaatccacc 36611542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 527 - 573
Target Start/End: Complemental strand, 25904043 - 25903997
Alignment:
Q  527 ggtacaccggtgagggacttaattgaaccctcaccttagaatccacc 573  Q
    ||||||| ||||||||||||||||||  | |||||||||||||||||    
T  25904043 ggtacactggtgagggacttaattgattcttcaccttagaatccacc 25903997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 526 - 571
Target Start/End: Complemental strand, 8754220 - 8754175
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatcca 571  Q
    ||||||||||||||| ||||||||||   |||||||||||||||||    
T  8754220 tggtacaccggtgagagacttaattgcttcctcaccttagaatcca 8754175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 531 - 572
Target Start/End: Complemental strand, 10590340 - 10590299
Alignment:
Q  531 caccggtgagggacttaattgaaccctcaccttagaatccac 572  Q
    ||||| |||||||||||||||||| |||||| ||||||||||    
T  10590340 caccgatgagggacttaattgaactctcaccctagaatccac 10590299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 537 - 574
Target Start/End: Complemental strand, 41965148 - 41965111
Alignment:
Q  537 tgagggacttaattgaaccctcaccttagaatccacct 574  Q
    ||||||||||||||| ||||||||| ||||||||||||    
T  41965148 tgagggacttaattggaccctcaccctagaatccacct 41965111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 534 - 571
Target Start/End: Original strand, 44876943 - 44876980
Alignment:
Q  534 cggtgagggacttaattgaaccctcaccttagaatcca 571  Q
    ||||||||||||||||||| |||||||| |||||||||    
T  44876943 cggtgagggacttaattgatccctcaccctagaatcca 44876980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 5e-22; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 472 - 574
Target Start/End: Complemental strand, 27745657 - 27745555
Alignment:
Q  472 tggttataaataatgagatcttatagtcttatttaatccaatggtcaaataaactggtacaccggtgagggacttaattgaaccctcaccttagaatcca 571  Q
    ||||||| | || ||| ||| ||||| ||||||||||| |||| |||| |||| ||||| | ||||||||||||||||||||||||||||||||||||||    
T  27745657 tggttatgactattgaaatcatatagacttatttaatctaatgatcaattaaagtggtatatcggtgagggacttaattgaaccctcaccttagaatcca 27745558  T
Q  572 cct 574  Q
    |||    
T  27745557 cct 27745555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 472 - 569
Target Start/End: Complemental strand, 32772201 - 32772104
Alignment:
Q  472 tggttataaataatgagatcttatagtcttatttaatccaatggtcaaataaactggtacaccggtgagggacttaattgaaccctcaccttagaatc 569  Q
    ||||||| | || ||||||| ||||| ||||||||||| ||||||||| |||| ||||||| ||||||||| ||||||||| ||||||||||||||||    
T  32772201 tggttatgactattgagatcatatagacttatttaatctaatggtcaattaaagtggtacatcggtgaggggcttaattgagccctcaccttagaatc 32772104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 479 - 574
Target Start/End: Complemental strand, 11937795 - 11937697
Alignment:
Q  479 aaataatgagatcttatagtcttatttaatccaatggtcaaataaa--ctggtacaccggtgagggacttaattgaaccctcacc-ttagaatccacct 574  Q
    |||||| |||||| |||||||||||||||||||||||||||||| |   |||||||||||||||||| |||||||| ||| |||| |||||||||||||    
T  11937795 aaataaggagatcatatagtcttatttaatccaatggtcaaatatagtgtggtacaccggtgagggatttaattgagcccccacctttagaatccacct 11937697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 526 - 581
Target Start/End: Original strand, 24848427 - 24848482
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatccaccttgttttg 581  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  24848427 tggtacaccggtgagggacttaatagaaccctcaccctagaatccaccttgttttg 24848482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 526 - 574
Target Start/End: Original strand, 26240872 - 26240920
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatccacct 574  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  26240872 tggtccaccggtgagggacttaattgaaccctcaccctagaatccacct 26240920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 526 - 573
Target Start/End: Complemental strand, 24847830 - 24847783
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatccacc 573  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||    
T  24847830 tggtacaccggtgagggacttaatagaaccctcaccctagaatccacc 24847783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 531 - 573
Target Start/End: Complemental strand, 16449597 - 16449555
Alignment:
Q  531 caccggtgagggacttaattgaaccctcaccttagaatccacc 573  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  16449597 caccggtgagggacttaattgaaccctcaccctagaatccacc 16449555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 531 - 573
Target Start/End: Complemental strand, 16459171 - 16459129
Alignment:
Q  531 caccggtgagggacttaattgaaccctcaccttagaatccacc 573  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  16459171 caccggtgagggacttaattgaaccctcaccctagaatccacc 16459129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 472 - 569
Target Start/End: Complemental strand, 2260954 - 2260857
Alignment:
Q  472 tggttataaataatgagatcttatagtcttatttaatccaatggtcaaataaactggtacaccggtgagggacttaattgaaccctcaccttagaatc 569  Q
    ||||||||| |||||| ||| ||||   ||||||||| ||||| || |  ||| ||||| ||||||||||||||| |||||||||||||| |||||||    
T  2260954 tggttataactaatgaaatcatataaatttatttaattcaatgatcgatcaaaatggtataccggtgagggacttgattgaaccctcaccctagaatc 2260857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 472 - 572
Target Start/End: Complemental strand, 6942291 - 6942191
Alignment:
Q  472 tggttataaataatgagatcttatagtcttatttaatccaatggtcaaataaactggtacaccggtgagggacttaattgaaccctcaccttagaatcca 571  Q
    |||| |||| || ||| ||||| ||| | ||||||||| || |||  |||||| |||| ||||| ||| |||||||||||| ||||||||||||||||||    
T  6942291 tggtaataagtattgaaatcttgtagacatatttaatctaacggtggaataaagtggttcaccgatgaaggacttaattgatccctcaccttagaatcca 6942192  T
Q  572 c 572  Q
    |    
T  6942191 c 6942191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 526 - 574
Target Start/End: Complemental strand, 26240161 - 26240113
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatccacct 574  Q
    |||| |||||||||||||||||||||| |||||||| ||||||||||||    
T  26240161 tggttcaccggtgagggacttaattgatccctcaccctagaatccacct 26240113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 536 - 572
Target Start/End: Original strand, 42345867 - 42345903
Alignment:
Q  536 gtgagggacttaattgaaccctcaccttagaatccac 572  Q
    |||||||||||||||||||||||||||||||| ||||    
T  42345867 gtgagggacttaattgaaccctcaccttagaagccac 42345903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 526 - 573
Target Start/End: Original strand, 12449313 - 12449360
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatccacc 573  Q
    |||| |||||||||||||||||||||| |||||||| || ||||||||    
T  12449313 tggtccaccggtgagggacttaattgatccctcaccctaaaatccacc 12449360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 504 - 567
Target Start/End: Original strand, 16450444 - 16450507
Alignment:
Q  504 ttaatccaatggtcaaataaactggtacaccggtgagggacttaattgaaccctcaccttagaa 567  Q
    |||||| |||||| ||||  | ||||||||| |||||||| ||||||||||||||||| |||||    
T  16450444 ttaatctaatggttaaatttagtggtacaccagtgagggatttaattgaaccctcaccctagaa 16450507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 504 - 567
Target Start/End: Original strand, 16460020 - 16460083
Alignment:
Q  504 ttaatccaatggtcaaataaactggtacaccggtgagggacttaattgaaccctcaccttagaa 567  Q
    |||||| |||||| ||||  | ||||||||| |||||||| ||||||||||||||||| |||||    
T  16460020 ttaatctaatggttaaatttagtggtacaccagtgagggatttaattgaaccctcaccctagaa 16460083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 535 - 574
Target Start/End: Original strand, 21257927 - 21257966
Alignment:
Q  535 ggtgagggacttaattgaaccctcaccttagaatccacct 574  Q
    ||||||| |||||||||||||||||||||||||| |||||    
T  21257927 ggtgaggaacttaattgaaccctcaccttagaatgcacct 21257966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 526 - 573
Target Start/End: Original strand, 50657142 - 50657189
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatccacc 573  Q
    |||| |||||||||||||||||||||  ||||| ||||||||||||||    
T  50657142 tggtccaccggtgagggacttaattgctccctcgccttagaatccacc 50657189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 535 - 573
Target Start/End: Original strand, 27746168 - 27746206
Alignment:
Q  535 ggtgagggacttaattgaaccctcaccttagaatccacc 573  Q
    ||||||||||||||||||||||||||  |||||||||||    
T  27746168 ggtgagggacttaattgaaccctcacgctagaatccacc 27746206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 531 - 573
Target Start/End: Complemental strand, 31109281 - 31109239
Alignment:
Q  531 caccggtgagggacttaattgaaccctcaccttagaatccacc 573  Q
    |||||||||||||| |||||| ||||||||| |||||||||||    
T  31109281 caccggtgagggacctaattggaccctcaccctagaatccacc 31109239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 531 - 573
Target Start/End: Original strand, 31116690 - 31116732
Alignment:
Q  531 caccggtgagggacttaattgaaccctcaccttagaatccacc 573  Q
    |||||||||||||| |||||| ||||||||| |||||||||||    
T  31116690 caccggtgagggacctaattggaccctcaccctagaatccacc 31116732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 161
Target Start/End: Complemental strand, 11938230 - 11938145
Alignment:
Q  76 aaagagggattttgaccgttactccgtcgatgaattcaagtaaaaatatgttttcaaatgggtatttacatgaattaggaataaca 161  Q
    ||||||||||||||||  | |||| | | |||||||||||||  ||| || ||||||||| ||||||| | |||||| ||||||||    
T  11938230 aaagagggattttgacattaactctgacaatgaattcaagtaggaatttgatttcaaatgagtatttataggaattaagaataaca 11938145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 532 - 569
Target Start/End: Original strand, 14166914 - 14166951
Alignment:
Q  532 accggtgagggacttaattgaaccctcaccttagaatc 569  Q
    ||||||||||||||||||||| |||||||| |||||||    
T  14166914 accggtgagggacttaattgagccctcaccctagaatc 14166951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 537 - 574
Target Start/End: Original strand, 19930895 - 19930931
Alignment:
Q  537 tgagggacttaattgaaccctcaccttagaatccacct 574  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  19930895 tgagggacttaattgaacc-tcaccttagaatccacct 19930931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 5e-19; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 480 - 573
Target Start/End: Complemental strand, 56226555 - 56226462
Alignment:
Q  480 aataatgagatcttatagtcttatttaatccaatggtcaaataaactggtacaccggtgagggacttaattgaaccctcaccttagaatccacc 573  Q
    |||||| ||||| ||| |||||||| |||| |||||| ||||||| ||||||| ||||||| ||||||||||| |||||| |||||||||||||    
T  56226555 aataattagatcctatggtcttattaaatctaatggttaaataaagtggtacatcggtgagagacttaattgatccctcatcttagaatccacc 56226462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 526 - 578
Target Start/End: Original strand, 14527577 - 14527629
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatccaccttgtt 578  Q
    |||| |||||||||||||||||||||| |||||||| ||||||||||||||||    
T  14527577 tggttcaccggtgagggacttaattgatccctcaccctagaatccaccttgtt 14527629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 531 - 573
Target Start/End: Complemental strand, 52129463 - 52129421
Alignment:
Q  531 caccggtgagggacttaattgaaccctcaccttagaatccacc 573  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  52129463 caccagtgagggacttaattgaaccctcaccttagaatccacc 52129421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 500 - 573
Target Start/End: Original strand, 56227030 - 56227103
Alignment:
Q  500 ttatttaatccaatggtcaaataaactggtacaccggtgagggacttaattgaaccctcaccttagaatccacc 573  Q
    ||||| ||||||| ||| ||||||| |||||||||||||| |||||| ||||| |||||||  |||||||||||    
T  56227030 ttattaaatccaacggttaaataaagtggtacaccggtgaaggacttcattgagccctcactctagaatccacc 56227103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 526 - 574
Target Start/End: Original strand, 6258147 - 6258195
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatccacct 574  Q
    ||||||| ||||||||||||||||||  |||||||||||||||||||||    
T  6258147 tggtacatcggtgagggacttaattgctccctcaccttagaatccacct 6258195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 526 - 573
Target Start/End: Complemental strand, 24666176 - 24666129
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatccacc 573  Q
    |||| |||||||||||||||||||||| |||||||| |||||||||||    
T  24666176 tggttcaccggtgagggacttaattgatccctcaccctagaatccacc 24666129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 526 - 569
Target Start/End: Complemental strand, 36253534 - 36253491
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatc 569  Q
    ||||||| |||||||||||||||| |||||||||||||||||||    
T  36253534 tggtacatcggtgagggacttaatagaaccctcaccttagaatc 36253491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 526 - 572
Target Start/End: Complemental strand, 20143326 - 20143280
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatccac 572  Q
    |||||||||||||||||||||| |||| |||||||| ||||||||||    
T  20143326 tggtacaccggtgagggacttagttgagccctcaccctagaatccac 20143280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 536 - 574
Target Start/End: Complemental strand, 34941539 - 34941501
Alignment:
Q  536 gtgagggacttaattgaaccctcaccttagaatccacct 574  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  34941539 gtgagggacttaattgaaccctcaccctagaatccacct 34941501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 526 - 575
Target Start/End: Original strand, 13925650 - 13925699
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatccacctt 575  Q
    |||| ||||||||||||||||| |||| ||||||| ||||||||||||||    
T  13925650 tggtccaccggtgagggacttagttgatccctcactttagaatccacctt 13925699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 526 - 574
Target Start/End: Original strand, 26354233 - 26354281
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatccacct 574  Q
    |||| |||| |||||||||||||||||||||||||| ||||| ||||||    
T  26354233 tggtccacctgtgagggacttaattgaaccctcaccctagaacccacct 26354281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 526 - 573
Target Start/End: Original strand, 6057000 - 6057047
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatccacc 573  Q
    |||| ||||||||||||||||| | ||||||||||| |||||||||||    
T  6057000 tggtccaccggtgagggacttagtagaaccctcaccctagaatccacc 6057047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 526 - 573
Target Start/End: Complemental strand, 13924840 - 13924793
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatccacc 573  Q
    |||| ||||||||||||| |||||||| |||||||| |||||||||||    
T  13924840 tggtccaccggtgagggatttaattgagccctcaccctagaatccacc 13924793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 526 - 569
Target Start/End: Original strand, 18363654 - 18363697
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatc 569  Q
    |||| ||||||||||| ||||||||||||||||||| |||||||    
T  18363654 tggtccaccggtgaggaacttaattgaaccctcaccctagaatc 18363697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 526 - 573
Target Start/End: Complemental strand, 21837436 - 21837389
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatccacc 573  Q
    ||||| |||||||||||||||| ||| ||||||||| |||||||||||    
T  21837436 tggtaaaccggtgagggacttagttggaccctcaccctagaatccacc 21837389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 531 - 574
Target Start/End: Complemental strand, 34450857 - 34450814
Alignment:
Q  531 caccggtgagggacttaattgaaccctcaccttagaatccacct 574  Q
    |||||||||||||||||||||| |||||||| |||||| |||||    
T  34450857 caccggtgagggacttaattgatccctcaccctagaattcacct 34450814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 526 - 569
Target Start/End: Complemental strand, 36599274 - 36599231
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatc 569  Q
    |||| ||||||||||| ||||||||||||||||||| |||||||    
T  36599274 tggtccaccggtgaggaacttaattgaaccctcaccctagaatc 36599231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 534 - 573
Target Start/End: Complemental strand, 42792814 - 42792775
Alignment:
Q  534 cggtgagggacttaattgaaccctcaccttagaatccacc 573  Q
    |||||||||||||||||| ||||||||| |||||||||||    
T  42792814 cggtgagggacttaattggaccctcaccctagaatccacc 42792775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 526 - 573
Target Start/End: Complemental strand, 51386503 - 51386456
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatccacc 573  Q
    |||| ||| ||||||||||||||||||||||||||| || ||||||||    
T  51386503 tggttcactggtgagggacttaattgaaccctcaccctaaaatccacc 51386456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 527 - 573
Target Start/End: Original strand, 21527027 - 21527073
Alignment:
Q  527 ggtacaccggtgagggacttaattgaaccctcaccttagaatccacc 573  Q
    |||||| |||||||||||||||| || |||||||| |||||||||||    
T  21527027 ggtacaacggtgagggacttaatagagccctcaccctagaatccacc 21527073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 527 - 569
Target Start/End: Original strand, 26393400 - 26393442
Alignment:
Q  527 ggtacaccggtgagggacttaattgaaccctcaccttagaatc 569  Q
    ||||||||||||||||||||||| || |||||||| |||||||    
T  26393400 ggtacaccggtgagggacttaatagagccctcaccctagaatc 26393442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 531 - 573
Target Start/End: Original strand, 34451443 - 34451485
Alignment:
Q  531 caccggtgagggacttaattgaaccctcaccttagaatccacc 573  Q
    ||||||||||| |||||||||| |||||||| |||||||||||    
T  34451443 caccggtgaggtacttaattgatccctcaccctagaatccacc 34451485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 531 - 573
Target Start/End: Original strand, 47157385 - 47157427
Alignment:
Q  531 caccggtgagggacttaattgaaccctcaccttagaatccacc 573  Q
    ||||||||||||| ||||||||||||||||| |||||| ||||    
T  47157385 caccggtgagggatttaattgaaccctcaccctagaattcacc 47157427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 538 - 575
Target Start/End: Original strand, 24666865 - 24666902
Alignment:
Q  538 gagggacttaattgaaccctcaccttagaatccacctt 575  Q
    |||||||||||||||||||||||| || ||||||||||    
T  24666865 gagggacttaattgaaccctcaccctataatccacctt 24666902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 526 - 571
Target Start/End: Original strand, 25056294 - 25056339
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatcca 571  Q
    |||| ||||||||| |||||| ||||||| ||||||||||||||||    
T  25056294 tggtccaccggtgaaggacttgattgaactctcaccttagaatcca 25056339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 526 - 571
Target Start/End: Original strand, 38519188 - 38519233
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatcca 571  Q
    ||||||||||||||||||||||||||  || ||||| |||||||||    
T  38519188 tggtacaccggtgagggacttaattgctccttcaccctagaatcca 38519233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 531 - 568
Target Start/End: Complemental strand, 47156675 - 47156638
Alignment:
Q  531 caccggtgagggacttaattgaaccctcaccttagaat 568  Q
    ||||| ||||||||||||||||||||||||| ||||||    
T  47156675 caccgatgagggacttaattgaaccctcaccctagaat 47156638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 526 - 571
Target Start/End: Original strand, 53778416 - 53778461
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatcca 571  Q
    |||| |||||||||||||||||| || ||||||||| |||||||||    
T  53778416 tggtccaccggtgagggacttaaatggaccctcaccctagaatcca 53778461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000003; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 526 - 574
Target Start/End: Original strand, 20606922 - 20606970
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatccacct 574  Q
    |||| ||||||||||||||||||||||||||||||| |||||| |||||    
T  20606922 tggttcaccggtgagggacttaattgaaccctcaccctagaattcacct 20606970  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 531 - 574
Target Start/End: Original strand, 127741 - 127784
Alignment:
Q  531 caccggtgagggacttaattgaaccctcaccttagaatccacct 574  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||    
T  127741 caccggtgaaggacttaattgaaccctcaccctagaatccacct 127784  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 526 - 573
Target Start/End: Original strand, 30201989 - 30202036
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatccacc 573  Q
    |||| |||||||||||||||||||||  ||||||||||||||||||||    
T  30201989 tggtccaccggtgagggacttaattgctccctcaccttagaatccacc 30202036  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 531 - 573
Target Start/End: Original strand, 18537499 - 18537541
Alignment:
Q  531 caccggtgagggacttaattgaaccctcaccttagaatccacc 573  Q
    ||||||||||||||||||||||||||||| | |||||||||||    
T  18537499 caccggtgagggacttaattgaaccctcatcatagaatccacc 18537541  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 525 - 573
Target Start/End: Original strand, 7754967 - 7755015
Alignment:
Q  525 ctggtacaccggtgagggacttaattgaaccctcaccttagaatccacc 573  Q
    ||||| ||||||||| |||||||||||| |||||||| |||||||||||    
T  7754967 ctggtccaccggtgaaggacttaattgatccctcaccctagaatccacc 7755015  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 526 - 574
Target Start/End: Complemental strand, 10173983 - 10173935
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatccacct 574  Q
    |||| ||||||||||||||||||  ||||||||||| ||||||||||||    
T  10173983 tggttcaccggtgagggacttaacagaaccctcaccctagaatccacct 10173935  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 526 - 573
Target Start/End: Complemental strand, 1141347 - 1141300
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatccacc 573  Q
    |||| |||||||||||||||| ||||  ||||||||||||||||||||    
T  1141347 tggtccaccggtgagggacttcattgctccctcaccttagaatccacc 1141300  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 531 - 574
Target Start/End: Complemental strand, 6873564 - 6873521
Alignment:
Q  531 caccggtgagggacttaattgaaccctcaccttagaatccacct 574  Q
    ||||||| ||||||||||||||||||||||| || |||||||||    
T  6873564 caccggtaagggacttaattgaaccctcaccctaaaatccacct 6873521  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 532 - 570
Target Start/End: Original strand, 23458631 - 23458669
Alignment:
Q  532 accggtgagggacttaattgaaccctcaccttagaatcc 570  Q
    ||||||||||||||||||| |||||||||| ||||||||    
T  23458631 accggtgagggacttaattaaaccctcaccgtagaatcc 23458669  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 526 - 572
Target Start/End: Original strand, 34595935 - 34595981
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatccac 572  Q
    |||||||||||||||||| ||| ||||||||||||  ||||||||||    
T  34595935 tggtacaccggtgagggatttagttgaaccctcactctagaatccac 34595981  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 534 - 568
Target Start/End: Original strand, 44297423 - 44297457
Alignment:
Q  534 cggtgagggacttaattgaaccctcaccttagaat 568  Q
    |||||||||||||||||||||||||||| ||||||    
T  44297423 cggtgagggacttaattgaaccctcaccctagaat 44297457  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 526 - 575
Target Start/End: Original strand, 29388949 - 29388998
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatccacctt 575  Q
    ||||||| |||||||||||||||| || |||||||| || ||||||||||    
T  29388949 tggtacatcggtgagggacttaatagagccctcaccctaaaatccacctt 29388998  T

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Target: chr6 (Bit Score: 36; Significance: 0.0000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 479 - 522
Target Start/End: Original strand, 8555064 - 8555107
Alignment:
Q  479 aaataatgagatcttatagtcttatttaatccaatggtcaaata 522  Q
    |||||| |||||| ||||||||||||||||||||||||||||||    
T  8555064 aaataaggagatcctatagtcttatttaatccaatggtcaaata 8555107  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 526 - 574
Target Start/End: Original strand, 13084880 - 13084928
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatccacct 574  Q
    ||||||||||||||| |||||| ||||||||||||| |||||| |||||    
T  13084880 tggtacaccggtgagagacttagttgaaccctcaccctagaattcacct 13084928  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 526 - 573
Target Start/End: Original strand, 16718995 - 16719042
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatccacc 573  Q
    |||| |||||||||||||||||||||| || ||||| |||||||||||    
T  16718995 tggtccaccggtgagggacttaattgatccgtcaccctagaatccacc 16719042  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 526 - 575
Target Start/End: Complemental strand, 2138524 - 2138475
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatccacctt 575  Q
    |||| |||||||||||||| |||||| ||||||||| |||||| ||||||    
T  2138524 tggtccaccggtgagggacctaattggaccctcaccctagaattcacctt 2138475  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 526 - 575
Target Start/End: Original strand, 34423572 - 34423621
Alignment:
Q  526 tggtacaccggtgagggacttaattgaaccctcaccttagaatccacctt 575  Q
    ||||||| ||||||||||||||||||   ||||||| |||||||||||||    
T  34423572 tggtacatcggtgagggacttaattgcttcctcaccctagaatccacctt 34423621  T

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Target: scaffold0627 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 534 - 574
Target Start/End: Complemental strand, 6503 - 6463
Alignment:
Q  534 cggtgagggacttaattgaaccctcaccttagaatccacct 574  Q
    |||||||||||||||||||||||||||| ||||| ||||||    
T  6503 cggtgagggacttaattgaaccctcaccctagaacccacct 6463  T

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Target: scaffold0002 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 511 - 568
Target Start/End: Complemental strand, 97266 - 97209
Alignment:
Q  511 aatggtcaaataaactggtacaccggtgagggacttaattgaaccctcaccttagaat 568  Q
    |||||||||||  | |||| ||| |||||||||||| |||||||| ||||||||||||    
T  97266 aatggtcaaatttagtggtgcactggtgagggacttgattgaaccatcaccttagaat 97209  T

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