View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2811_1D_low_10 (Length: 377)
Name: NF2811_1D_low_10
Description: NF2811_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2811_1D_low_10 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 6 - 377
Target Start/End: Complemental strand, 44378263 - 44377892
Alignment:
| Q |
6 |
gaaagagtggaggaatggaagaaaaagcagaatgaaaaattggaggtggttaagcacgaaggtgacaacaatgttgatgagtttaatgatcccgatttgc |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44378263 |
gaaagagtggaggaatggaagaaaaagcagaatgaaaaattagaggtggttaagcacgaaggtgacaacaatgttgatgagtttaatgatcccgatttgc |
44378164 |
T |
|
| Q |
106 |
caaagtaggtgccattatttaattcttaccatttgatctaaatactcatctggtttatatattgcatgaacttgttgcaaaatccatttcttacatgaac |
205 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
44378163 |
caaagtaagtgctattatttaattcttaccatttgatctaaatactcatctggtttatatattgcacgaacttgttgcaaaatccatttcttacatgaac |
44378064 |
T |
|
| Q |
206 |
ttgtactgttaacagaatggatgaaggaaggcaaccgctatggaggaagttaccaatcagtccaagcaagataaatccatatcgaatcattatagtactc |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44378063 |
ttgtactgttaacagaatggatgaaggaaggcaaccgctatggaggaagttaccaatcagtccaagcaagataaatccatatcgaatcattatagtactc |
44377964 |
T |
|
| Q |
306 |
cggatcgctgttcttgctctcttttttcattacagaattctccatcccgtcaacgatgcatatgcattgtgg |
377 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
44377963 |
cggatcgctgttcttgctctcttttttcattacagaattctccatccggtcaacgatgcatatgcattgtgg |
44377892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University