View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2811_1D_low_12 (Length: 361)
Name: NF2811_1D_low_12
Description: NF2811_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2811_1D_low_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 150; Significance: 3e-79; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 22 - 265
Target Start/End: Original strand, 11856225 - 11856472
Alignment:
| Q |
22 |
aattctgttgcaagttacacttgaaattgtatagc--ataggaaaaattaaaaacagtaacctaaagaagtgatagaaa--gagataagtactggatttg |
117 |
Q |
| |
|
|||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
11856225 |
aattgtgttgcaagttacacttgaaataacatagatgataggaaaaattaaaaacagtaacctaaagaagtgatagaaattgagataagtactggatttg |
11856324 |
T |
|
| Q |
118 |
tgagtttggtaataactttgtctccaactttaaaatccttaacttgctgtccaacctctacaacctctcctgctacatcagtgcctgaatcaaagtccca |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
11856325 |
tgagtttggtaataactttgtctccaactttaaaatcgttgacttgcggtccaacctctacaacctctcctgatacatcagtgcctgaatcaaagtccca |
11856424 |
T |
|
| Q |
218 |
agatcaaagaaatccttattatatcctaaatgtatgcagggaatgagt |
265 |
Q |
| |
|
||| |||| |||| | ||||||||||| ||| ||| ||||||||| |
|
|
| T |
11856425 |
agagcaaaagaatctatgttatatcctaagagtaagcatggaatgagt |
11856472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 70 - 241
Target Start/End: Original strand, 11841885 - 11842056
Alignment:
| Q |
70 |
aaaacagtaacctaaagaagtgatagaaagagataagtactggatttgtgagtttggtaataactttgtctccaactttaaaatccttaacttgctgtcc |
169 |
Q |
| |
|
||||||| ||||||| ||||||| ||||||||||||||||| ||| ||||||||| | |||||||||||| ||| ||| |||||||| ||||| |||| |
|
|
| T |
11841885 |
aaaacagaaacctaaggaagtgaaagaaagagataagtacttgatgtgtgagtttagcaataactttgtcgccagatttgaaatccttgacttgtggtcc |
11841984 |
T |
|
| Q |
170 |
aacctctacaacctctcctgctacatcagtgcctgaatcaaagtcccaagatcaaagaaatccttattatat |
241 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||| |||| | ||||||| |
|
|
| T |
11841985 |
aacctctaccacctctccagctacatcagtgcctgaatcaaagtcccaagagcaaaggaatcttaattatat |
11842056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 98 - 225
Target Start/End: Original strand, 11802018 - 11802145
Alignment:
| Q |
98 |
agagataagtactggatttgtgagtttggtaataactttgtctccaactttaaaatccttaacttgctgtccaacctctacaacctctcctgctacatca |
197 |
Q |
| |
|
||||||| ||||| |||| ||||||| | ||||||||| |||||||||||||||||||| ||||| | ||||| ||||||||||||||||||||||||| |
|
|
| T |
11802018 |
agagataggtactagattgttgagtttagcaataactttatctccaactttaaaatccttgacttgttctccaatctctacaacctctcctgctacatca |
11802117 |
T |
|
| Q |
198 |
gtgcctgaatcaaagtcccaagatcaaa |
225 |
Q |
| |
|
|||||||||||||| |||||||| |||| |
|
|
| T |
11802118 |
gtgcctgaatcaaattcccaagagcaaa |
11802145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 22 - 214
Target Start/End: Original strand, 11431112 - 11431301
Alignment:
| Q |
22 |
aattctgttgcaagttacacttgaaattgtatagcataggaaaaattaaaaacagtaacctaaagaagtgatagaaagagataagtactggatttgtgag |
121 |
Q |
| |
|
|||| |||||||| ||||||||||||||| | | |||||||| || | | || ||||| |||||||| | ||||||||||| |||| |||| |||| |
|
|
| T |
11431112 |
aattgtgttgcaatttacacttgaaattg-agaccataggaagaaatgagaa--gtaacacaaagaagtaaaagaaagagatacttacttgattgttgag |
11431208 |
T |
|
| Q |
122 |
tttggtaataactttgtctccaactttaaaatccttaacttgctgtccaacctctacaacctctcctgctacatcagtgcctgaatcaaagtc |
214 |
Q |
| |
|
||| | ||||||||||||||||||||| ||||| |||||||| ||||| ||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
11431209 |
tttagcaataactttgtctccaactttgaaatctttaacttgtgatccaaaatctactacctctcctgctacatcggtgcctgaatcaaagtc |
11431301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 22 - 214
Target Start/End: Complemental strand, 11564354 - 11564165
Alignment:
| Q |
22 |
aattctgttgcaagttacacttgaaattgtatagcataggaaaaattaaaaacagtaacctaaagaagtgatagaaagagataagtactggatttgtgag |
121 |
Q |
| |
|
|||| |||||||| ||||||||||||||| | | |||||||| || | | || ||||| |||||||| | ||||||||||| |||| |||| |||| |
|
|
| T |
11564354 |
aattgtgttgcaatttacacttgaaattg-agaccataggaagaaatgagaa--gtaacacaaagaagtaaaagaaagagatacttacttgattgttgag |
11564258 |
T |
|
| Q |
122 |
tttggtaataactttgtctccaactttaaaatccttaacttgctgtccaacctctacaacctctcctgctacatcagtgcctgaatcaaagtc |
214 |
Q |
| |
|
||| | ||||||||||||||||||||| ||||| |||||||| ||||| ||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
11564257 |
tttagcaataactttgtctccaactttgaaatctttaacttgtgatccaaaatctactacctctcctgctacatcggtgcctgaatcaaagtc |
11564165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 299 - 353
Target Start/End: Original strand, 11856470 - 11856524
Alignment:
| Q |
299 |
agtataaatataatccttcggtttccagagaaaagagaccctgataagtataatc |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
11856470 |
agtataaatataatccttcggtttccagagaaaagaggccctgataagtataatc |
11856524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 166 - 210
Target Start/End: Original strand, 11808062 - 11808106
Alignment:
| Q |
166 |
gtccaacctctacaacctctcctgctacatcagtgcctgaatcaa |
210 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
11808062 |
gtccaacttctactacctctcctgctacatcagtgcctgaatcaa |
11808106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University