View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2811_1D_low_15 (Length: 332)
Name: NF2811_1D_low_15
Description: NF2811_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2811_1D_low_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 20 - 316
Target Start/End: Original strand, 49922984 - 49923281
Alignment:
| Q |
20 |
attctcaacctgatattaaatcaaatcaaagtcacactatcttatactcactgaaaactacatagtttcatacatggatctgaattttctcattcccgct |
119 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||| | |
|
|
| T |
49922984 |
attctcaacctgatgttaaatcaaatcaaagtcacactatcttatactcactgaaaactgcatagtttcacacatggatctggattttctcattcccgtt |
49923083 |
T |
|
| Q |
120 |
ctaagtccatcatggaactctgttagtccaaactactcacaacccatttctttaattcaatgatttattacaattcaatcatcaatttcacttctttttg |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
49923084 |
ctaagtccatcatggaactctgttagtccaaactactcacaacccatttctttaattcaatgatttattacaattcaatcatcaatttcatttctttttg |
49923183 |
T |
|
| Q |
220 |
cattttacgaatctgggtcaggttgttttactcgtggga-ttttttacttacttggccattgttggatccattctccctgaaaaacttgttcctggtg |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
49923184 |
cattttacgaatctgggtcaggttgttttactcgtgggatttttttacttacttggccattgttggatccattctccctggaaaacttgttcctggtg |
49923281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 42 - 316
Target Start/End: Complemental strand, 26778068 - 26777794
Alignment:
| Q |
42 |
aaatcaaagtcacactatcttatactcactgaaaactacatagtttcatacatggatctgaattttctcattcccgctctaagtccatcatggaactctg |
141 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |||||| ||| ||||||||||| |||||||||||| |||||||| ||||||||||||||| | |
|
|
| T |
26778068 |
aaatcgaagtcacactatcttatactcactgaaaactgcatagtgtcacacatggatctggattttctcattcacgctctaattccatcatggaactccg |
26777969 |
T |
|
| Q |
142 |
ttagtccaaactactcacaacccatttctttaattcaatgatttattacaattcaatcatcaatttcacttctttttgcattttacgaatctgggtcagg |
241 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||| ||||||| |||||| |||||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
26777968 |
ttagttcaaactactcacaacccattactttaattcaatcatttattccaattctgtcatcaatttcatatctttttgcatttttcgaatctgggtcagg |
26777869 |
T |
|
| Q |
242 |
ttgttttactcgtgggattttttacttacttggccattgttggatccattctccctgaaaaacttgttcctggtg |
316 |
Q |
| |
|
||| |||||| | ||| |||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
26777868 |
ttgctttacttgcgggtttttttacttacttagccattgttggatccattctccctggaaagcttgttcctggtg |
26777794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University