View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2811_1D_low_16 (Length: 324)

Name: NF2811_1D_low_16
Description: NF2811_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2811_1D_low_16
NF2811_1D_low_16
[»] chr8 (1 HSPs)
chr8 (12-303)||(35071238-35071529)


Alignment Details
Target: chr8 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 12 - 303
Target Start/End: Complemental strand, 35071529 - 35071238
Alignment:
Q  12 gttgagtgagggagttgagattatcgggaagggtaccggcaagcttttgatcggagaggtttatgctggtgacgcggttgtcggatgagcatttgacgcc 111  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35071529 gttgagtgagggagttgagattatcgggaagggttccggcgagcttttgatcggagaggtttatgctggtgacgcggttgtcggatgagcatttgacgcc 35071430  T
Q  112 ggaccattgacagaaggaagtattggaagaccagccgttaggagaaggtttaagggattgccgaaggctttgcatgacggtggcgtcatcgtcggccacc 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  35071429 ggaccattgacagaaggaagtattggaagaccagccgttaggagaaggtttaagggattgccgaaggctttgcatgacggtgccgtcatcgtcggccacc 35071330  T
Q  212 acgaaggtggcggcgatgatcgcgatgatgatgaatgagatttggtgcattttggaaataaatgcggttggcagtagcaagagactactgtc 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35071329 acgaaggtggcggcgatgatcgcgatgatgatgaatgagatttggtgcattttggaaataaatgcggttggcagtagcaagagactactgtc 35071238  T

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