View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2811_1D_low_17 (Length: 321)
Name: NF2811_1D_low_17
Description: NF2811_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2811_1D_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 13 - 299
Target Start/End: Complemental strand, 181418 - 181132
Alignment:
| Q |
13 |
acatcagaaaataacagctcaagaggagctacggttttgatagaagaaactgaaaaaggaagcttatgacttttattaatatgacaagaattacaatgaa |
112 |
Q |
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| T |
181418 |
acatcagaaaataacagttcaagaggagctgcggttttgatagaagaaactgaaaaaggaagcttatgacttttattaatatgacaagaattacaatgaa |
181319 |
T |
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| Q |
113 |
nnnnnnnattttctaagttcctaaaactgccacaactagacatcattagtgcaagaactctgaaagagggatgcccgaaacgagcatgccatatagaagg |
212 |
Q |
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| T |
181318 |
attttttattttctaagttcctaaaattgccacaactagacatcattagtgcaagaactctgaaagagggatgcccgaaacgagcatgccatatagaagg |
181219 |
T |
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| Q |
213 |
ggaggcagagcaggtggaagcaagagtagtgggttgatattgagacatataatgaaaggtgtagagatcactgttacttgaaccgcg |
299 |
Q |
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| T |
181218 |
tgaggcagagcaagtggaagcaagagcagtgggttgatattgagacatataatgaaaggtgtagagatcactgttactggaaccgcg |
181132 |
T |
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Back To:
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Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 13 - 299
Target Start/End: Complemental strand, 1701845 - 1701559
Alignment:
| Q |
13 |
acatcagaaaataacagctcaagaggagctacggttttgatagaagaaactgaaaaaggaagcttatgacttttattaatatgacaagaattacaatgaa |
112 |
Q |
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||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
1701845 |
acatcagaaaataacagttcaagaggagctgtggttttgatagaagaaacagaaaaaggaagcttatgacttttattaatatggcaagaattacaatgaa |
1701746 |
T |
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| Q |
113 |
nnnnnnnattttctaagttcctaaaactgccacaactagacatcattagtgcaagaactctgaaagagggatgcccgaaacgagcatgccatatagaagg |
212 |
Q |
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| T |
1701745 |
attttttattttctaaattcctaaaattgccacaagtagacatcatttgtgcaagaactctgaaagagggatgaccgaaacgagcatgccataaagaagg |
1701646 |
T |
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| Q |
213 |
ggaggcagagcaggtggaagcaagagtagtgggttgatattgagacatataatgaaaggtgtagagatcactgttacttgaaccgcg |
299 |
Q |
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|||||| ||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
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| T |
1701645 |
ggaggcggagcaggtggaagcaagagcagtgggttgatattgagacttaggatgaaaggtgtagagatcactgttacttgaaccgcg |
1701559 |
T |
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