View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2811_1D_low_19 (Length: 302)

Name: NF2811_1D_low_19
Description: NF2811_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2811_1D_low_19
NF2811_1D_low_19
[»] chr7 (3 HSPs)
chr7 (1-281)||(41689307-41689587)
chr7 (120-232)||(41682163-41682275)
chr7 (1-50)||(41682033-41682083)
[»] chr4 (3 HSPs)
chr4 (120-218)||(45096147-45096245)
chr4 (157-217)||(44669426-44669486)
chr4 (157-217)||(44688702-44688762)
[»] chr1 (1 HSPs)
chr1 (121-217)||(44005483-44005579)


Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 41689307 - 41689587
Alignment:
Q  1 aacacaggttaatgagttttcgaacaatggcttaaagggtaagaatagatcctgcagttgttgagttcacatatattggaaacaagcaattgctggtggt 100  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  41689307 aacacgggttaatgagttttcgaacaatggcttaaagggtaagaatagatcctgcagttgttgagttcacatatattggaaacaagcaattgttggtggt 41689406  T
Q  101 tcaagcttggttcagcggttgagattagggttttccatgatttggacgcacacataaattgaaagagggaagtcaccggaagtctgaggaggatctcaag 200  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  41689407 tcaagcttggctcagcggttgagattagggttttccatgatttggacgcacacataaattgaaagagggaagtcaccagaagtctgaggaggatctcaag 41689506  T
Q  201 gatgagttcttccggcaagacaggcaatggcagtcgagtgctaacggtctccatttgaagatcgtgattgagcttcttatt 281  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41689507 gatgagttcttccggcaagacaggcaatggcagtcgagtgctaacggtctccatttgaagatcgtgattgagcttcttatt 41689587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 120 - 232
Target Start/End: Original strand, 41682163 - 41682275
Alignment:
Q  120 tgagattagggttttccatgatttggacgcacacataaattgaaagagggaagtcaccggaagtctgaggaggatctcaaggatgagttcttccggcaag 219  Q
    |||||||||||||||||||||||||||| | ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  41682163 tgagattagggttttccatgatttggacacgcacataaattgaaggagggaagtcactggaagtctgaggaggatctcaaggatgagttcttccggcaag 41682262  T
Q  220 acaggcaatggca 232  Q
    |||||||||||||    
T  41682263 acaggcaatggca 41682275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 41682033 - 41682083
Alignment:
Q  1 aacacaggttaatgagttttcgaacaatggctt-aaagggtaagaatagat 50  Q
    ||||| ||| ||||||||||||||||||||||| |||||||||||||||||    
T  41682033 aacacgggtcaatgagttttcgaacaatggcttcaaagggtaagaatagat 41682083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 218
Target Start/End: Original strand, 45096147 - 45096245
Alignment:
Q  120 tgagattagggttttccatgatttggacgcacacataaattgaaagagggaagtcaccggaagtctgaggaggatctcaaggatgagttcttccggcaa 218  Q
    ||||| |||||||||||| | |||| || ||||| |  |||||| ||| ||  |||||| ||||| ||||||||| || | ||||||||||||||||||    
T  45096147 tgagagtagggttttccaggttttgcacacacacttgtattgaaggagagatttcaccgaaagtcggaggaggatttccacgatgagttcttccggcaa 45096245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 217
Target Start/End: Original strand, 44669426 - 44669486
Alignment:
Q  157 aattgaaagagggaagtcaccggaagtctgaggaggatctcaaggatgagttcttccggca 217  Q
    ||||||| ||||||  ||||||||||||  ||||| ||||||| ||||| |||||||||||    
T  44669426 aattgaaggagggatctcaccggaagtcgaaggagtatctcaacgatgatttcttccggca 44669486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 217
Target Start/End: Original strand, 44688702 - 44688762
Alignment:
Q  157 aattgaaagagggaagtcaccggaagtctgaggaggatctcaaggatgagttcttccggca 217  Q
    ||||||| ||||||  ||||||||||||  ||||| ||||||| ||||| |||||||||||    
T  44688702 aattgaaggagggatctcaccggaagtcgaaggagtatctcaacgatgatttcttccggca 44688762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 217
Target Start/End: Original strand, 44005483 - 44005579
Alignment:
Q  121 gagattagggttttccatgatttggacgcacacataaattgaaagagggaagtcaccggaagtctgaggaggatctcaaggatgagttcttccggca 217  Q
    ||||||||||||||||| |||||| |  | ||| || |||||| ||||||  ||||||||||  | |  ||||| |||| |||||||||||||||||    
T  44005483 gagattagggttttccaagatttgcaaacgcacttacattgaaggagggatctcaccggaagcttcaaaaggatatcaacgatgagttcttccggca 44005579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University