View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2811_1D_low_2 (Length: 647)
Name: NF2811_1D_low_2
Description: NF2811_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2811_1D_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 613; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 24 - 636
Target Start/End: Complemental strand, 13038301 - 13037689
Alignment:
| Q |
24 |
catacccgtccataaatggccagcgactctcgcctggaccaagcaagcccgaactttcaccatcaagctcaaaagtgcaagcaggccccattgactcctt |
123 |
Q |
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| T |
13038301 |
catacccgtccataaatggccagcgactctcgcctggaccaagcaagcccgaactttcaccatcaagctcaaaagtgcaagcaggccccattgactcctt |
13038202 |
T |
|
| Q |
124 |
ttcatttattgccttctccatagaaagcattaagcgcggagcccaaattgtggtaagtgttcttgtaatgacttgaaaccatttacgaagatcactaaca |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13038201 |
ttcatttattgccttctccatagaaagcattaagcgcggagcccaaattgtggtaagtgttcttgtaatgacttgaaaccatttacgaagatcactaaca |
13038102 |
T |
|
| Q |
224 |
ctaagagaatgcccagccaagtattgtatgcatcggcacaaaggagttccatcccacctaatttgcccatttaagccaacatccacggtaaaaattttgt |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13038101 |
ctaagagaatgcccagccaagtattgtatgcatcggcacaaaggagttccatcccacctaatttgcccatttaagccaacatccacggtaaaaattttgt |
13038002 |
T |
|
| Q |
324 |
ctgctgttcttaacagtacacttaacagaccagccgttgagcacattgccctgtttcttgtacaagctcgtaatatggcaagtagtccccttaccattcg |
423 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13038001 |
ctgctgttcttaacagtacacttaacagaccagccgttgagcacattgccctgtttcttgtacaagctcgtaatatggcaagtagtccccttaccattcg |
13037902 |
T |
|
| Q |
424 |
tgtccttggtgacatgacaacatcagtatcacctacataaggtagccaaggaataagttcacctgctacaatcgctgcacgggagtttagcattacacta |
523 |
Q |
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| T |
13037901 |
tgtccttggtgacatgacaacatcagtatcacctacataaggtagccaaggaataagttcacctgctacaatcgctgcacgggagtttagcattacacta |
13037802 |
T |
|
| Q |
524 |
ggaggattattatcaccatcctctgaaaaacattcaacaccacccattgttgcaagaagcgagtctacaattaagaaagacacgctctccatttcttcac |
623 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13037801 |
ggaggattattatcaccatcctctgaaaaacattcaacaccacccattgttgcaagaagcgagtctacaattaagaaagacacgctctccatttcttcac |
13037702 |
T |
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| Q |
624 |
cactcccgagaat |
636 |
Q |
| |
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||||||||||||| |
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| T |
13037701 |
cactcccgagaat |
13037689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 41 - 628
Target Start/End: Original strand, 28378289 - 28378873
Alignment:
| Q |
41 |
ggccagcgactctcgcctggaccaagcaagcccgaactttcaccatcaagctcaaaagtgcaagcaggccccattgactccttttcatttattgccttct |
140 |
Q |
| |
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||||| || ||||| |||||||||||||| || |||||||||||||||| |||||| || |||| || || ||||||||||| || ||||||| |||| |
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| T |
28378289 |
ggccaacggctctcacctggaccaagcaaaccagaactttcaccatcaaactcaaaggtagaagctggtcctcttgactcctttccacttattgctttct |
28378388 |
T |
|
| Q |
141 |
ccatagaaagcattaagcgcggagcccaaattgtggtaagtgttcttgtaatgacttgaaaccatttacgaagatcactaacactaagagaatgcccagc |
240 |
Q |
| |
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||| | || ||| | |||||||||||||| ||||||||| | |||||||||||||||||| || |||||||||||||||||||||||||| || |
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| T |
28378389 |
ccaatgctagtgttagttgtggagcccaaattgttgtaagtgttttagtaatgacttgaaaccatctatagagatcactaacactaagagaatgccccgc |
28378488 |
T |
|
| Q |
241 |
caagtattgtatgcatcggcacaaaggagttccatcccacctaatttgcccatttaagccaacatccacggtaaaaattttgtctgctgttcttaacagt |
340 |
Q |
| |
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||| ||||||| || |||||| |||||||||||||||||| ||||| |||||||||||||||||||| |||||||| || || |||||||| |||||| |
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| T |
28378489 |
taagaattgtatacagtggcacagaggagttccatcccacctcatttgtccatttaagccaacatccactgtaaaaatcttttcagctgttctcaacagt |
28378588 |
T |
|
| Q |
341 |
acacttaacagaccagccgttgagcacattgccctgtttcttgtacaagctcgtaatatggcaagtagtccccttaccattcgtgtccttggtgacatga |
440 |
Q |
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|| | ||||| |||||||| |||||||||||| || ||||| |||||||| | || |||||||||||||||||| ||||| | ||||||||||||||||| |
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| T |
28378589 |
actcctaacaaaccagccgatgagcacattgctctatttctagtacaagcccttattatggcaagtagtcccctaaccatccttgtccttggtgacatga |
28378688 |
T |
|
| Q |
441 |
caacatcagtatcacctacataaggtagccaaggaataagttcacctgctacaatcgctgcacgggagtttagcattacactaggaggattattatcacc |
540 |
Q |
| |
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|| ||||||||||||||| ||||| |||||||||||||| || |||| ||||| || || |||||||| |||||||||||||||||||||| ||| | |
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| T |
28378689 |
catcatcagtatcacctatgtaaggaagccaaggaataagctcgcctgacacaatggcagcccgggagttcagcattacactaggaggattatcctcatc |
28378788 |
T |
|
| Q |
541 |
atcctctgaaaaacattcaacaccacccattgttgcaagaagcgagtctacaattaagaaagacacgctctccatttcttcaccactc |
628 |
Q |
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||||| |||| ||||||||||||||||||||||||||| || |||||||||| ||||| ||||| |||||||||||||||||| |
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| T |
28378789 |
ctcctc---gaaactttcaacaccacccattgttgcaagaagtgaatctacaattaggaaaggtacgctatccatttcttcaccactc |
28378873 |
T |
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