View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2811_1D_low_20 (Length: 296)
Name: NF2811_1D_low_20
Description: NF2811_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2811_1D_low_20 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 4 - 296
Target Start/End: Complemental strand, 44378995 - 44378703
Alignment:
| Q |
4 |
tgcagttggagacgtaggcacatttggccgaactccctgatcaaatcccgcgtgttatttgtttgtatttttcatatctgtttgcttttgaatgagggtt |
103 |
Q |
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| T |
44378995 |
tgcagttggagacgtaggcacatttggccgaactccctgatcaaatcccgcgtgttatttgtttgtatttttcatatctgtttgcttttgaatgagggtt |
44378896 |
T |
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| Q |
104 |
gcttttctaacaatcaggtagtccaagagttgagggtgacgaagaagaggatgggattgatgatttggaaaatgagtttgatattggaagcaatatcaaa |
203 |
Q |
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| T |
44378895 |
gcttttctaacaatcaggtagtccaagagttgagggtgacgaagaagaggatgggattgatgatttggaaaatgagtttgatattggaagcaatatcaaa |
44378796 |
T |
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| Q |
204 |
cacgaccctcatcacattactgaggccatgttcttttctcacctcaacaatatcagtcggagttcacaaatgaatgcttcaagaatcaccacg |
296 |
Q |
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| T |
44378795 |
catgaccctcatcacattactgaggccatgttcttttctcacctcaacaatatcggtcggagttcacaaatgaatgcttcaagaatcaccacg |
44378703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 96
Target Start/End: Complemental strand, 3917847 - 3917806
Alignment:
| Q |
55 |
gtgttatttgtttgtatttttcatatctgtttgcttttgaat |
96 |
Q |
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| T |
3917847 |
gtgttatttgtttgtgcttttcatatctgtttacttttgaat |
3917806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 117
Target Start/End: Original strand, 29363138 - 29363244
Alignment:
| Q |
12 |
gagacgtaggcacatttggccgaactccctgatcaaatcccgcgtgttatttgtttgt-atttttcatatctgtttgcttttgaatgagggttgcttttc |
110 |
Q |
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| T |
29363138 |
gagacgtaggtacatttggccgaacactatgatcaaatctcgtgttttatctgtttgtgttttttcgtatccgtttacttttgaaccagggttgttgttc |
29363237 |
T |
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| Q |
111 |
taacaat |
117 |
Q |
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| T |
29363238 |
taacaat |
29363244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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