View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2811_1D_low_23 (Length: 277)

Name: NF2811_1D_low_23
Description: NF2811_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2811_1D_low_23
NF2811_1D_low_23
[»] chr8 (2 HSPs)
chr8 (62-181)||(38674227-38674346)
chr8 (62-174)||(38669671-38669783)
[»] chr7 (3 HSPs)
chr7 (171-267)||(31963713-31963809)
chr7 (171-267)||(31948712-31948808)
chr7 (197-267)||(31975107-31975177)
[»] chr3 (3 HSPs)
chr3 (99-181)||(2061495-2061577)
chr3 (145-177)||(2061687-2061719)
chr3 (145-182)||(2061830-2061867)


Alignment Details
Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 62 - 181
Target Start/End: Original strand, 38674227 - 38674346
Alignment:
Q  62 caatcagaaaatcatcaaaacgcaaacacccactcacgtttcagaaaaggatttcagtgtgttcttgtgcagatttgaaacagcaatcctagcagccaac 161  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38674227 caatcagaaaatcatcaaaacgcaaacacccactcacgtttcagaaaaggatttcagtgtgttcttgtgcagatttgaaacagcaatcctagcagccaac 38674326  T
Q  162 tgaatcaataaaatccaaaa 181  Q
    ||||||||||||||||||||    
T  38674327 tgaatcaataaaatccaaaa 38674346  T

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Target: chr8; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 62 - 174
Target Start/End: Original strand, 38669671 - 38669783
Alignment:
Q  62 caatcagaaaatcatcaaaacgcaaacacccactcacgtttcagaaaaggatttcagtgtgttcttgtgcagatttgaaacagcaatcctagcagccaac 161  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38669671 caatcagaaaatcatcaaaacacaaacacccactcacgtttcagcaaacgatttcagtgtgttcttgtgcagatttgaaacagcaatcctagcagccaac 38669770  T
Q  162 tgaatcaataaaa 174  Q
    |||||||||||||    
T  38669771 tgaatcaataaaa 38669783  T

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Target: chr7 (Bit Score: 77; Significance: 8e-36; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 171 - 267
Target Start/End: Complemental strand, 31963809 - 31963713
Alignment:
Q  171 aaaatccaaaaagaaagggagctatgtccaatcctagcagcatgcggttcccaacgaacagaacaggccaatcagaaggaattccagcaaggccctt 267  Q
    |||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  31963809 aaaatctaaaaagaaagggagctatgtccaatcctagcagaatgtggttcccaacgaacagaacaggcccatcggaaggaattccagcaaggccctt 31963713  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 171 - 267
Target Start/End: Complemental strand, 31948808 - 31948712
Alignment:
Q  171 aaaatccaaaaagaaagggagctatgtccaatcctagcagcatgcggttcccaacgaacagaacaggccaatcagaaggaattccagcaaggccctt 267  Q
    |||||| || || ||||||||||| ||||||| |||| |||||| |||||||||| |||| ||| ||||  || || ||||||||||||||||||||    
T  31948808 aaaatctaataataaagggagctacgtccaatgctagaagcatgtggttcccaactaacaaaactggcccctctgagggaattccagcaaggccctt 31948712  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 267
Target Start/End: Complemental strand, 31975177 - 31975107
Alignment:
Q  197 tccaatcctagcagcatgcggttcccaacgaacagaacaggccaatcagaaggaattccagcaaggccctt 267  Q
    ||||||||||||| |||| ||| |||||| |||| |||||| |  || ||||||||||||||||| |||||    
T  31975177 tccaatcctagcaacatgtggtacccaacaaacaaaacaggaccctctgaaggaattccagcaagtccctt 31975107  T

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Target: chr3 (Bit Score: 67; Significance: 8e-30; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 99 - 181
Target Start/End: Original strand, 2061495 - 2061577
Alignment:
Q  99 gtttcagaaaaggatttcagtgtgttcttgtgcagatttgaaacagcaatcctagcagccaactgaatcaataaaatccaaaa 181  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||    
T  2061495 gtttcagaaaaggattccagtgtgttcttgtgcagatttgaaacagcaatcctaccagccaactgaatcaacaaaatcgaaaa 2061577  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 2061687 - 2061719
Alignment:
Q  145 caatcctagcagccaactgaatcaataaaatcc 177  Q
    |||||||||||||||||||||||||||||||||    
T  2061687 caatcctagcagccaactgaatcaataaaatcc 2061719  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 145 - 182
Target Start/End: Original strand, 2061830 - 2061867
Alignment:
Q  145 caatcctagcagccaactgaatcaataaaatccaaaaa 182  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  2061830 caatcctagcaaccaacagaatcaataaaatccaaaaa 2061867  T

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