View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2811_1D_low_25 (Length: 270)

Name: NF2811_1D_low_25
Description: NF2811_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2811_1D_low_25
NF2811_1D_low_25
[»] chr7 (2 HSPs)
chr7 (135-270)||(3417336-3417471)
chr7 (15-90)||(3417516-3417591)
[»] chr5 (4 HSPs)
chr5 (138-270)||(28385572-28385704)
chr5 (138-270)||(12540923-12541055)
chr5 (16-83)||(12540801-12540868)
chr5 (13-81)||(28385447-28385515)
[»] chr2 (6 HSPs)
chr2 (138-254)||(13440438-13440554)
chr2 (138-253)||(13448601-13448716)
chr2 (138-253)||(13455072-13455187)
chr2 (16-83)||(13448479-13448546)
chr2 (20-90)||(13454954-13455024)
chr2 (20-90)||(13440320-13440390)
[»] scaffold0536 (2 HSPs)
scaffold0536 (138-250)||(6337-6449)
scaffold0536 (168-270)||(1271-1373)
[»] chr4 (7 HSPs)
chr4 (140-249)||(48974349-48974458)
chr4 (138-250)||(48958385-48958497)
chr4 (13-81)||(48965442-48965510)
chr4 (138-270)||(48912151-48912283)
chr4 (20-90)||(48958264-48958337)
chr4 (20-90)||(48961413-48961486)
chr4 (158-204)||(48965587-48965633)
[»] chr6 (4 HSPs)
chr6 (138-246)||(12483294-12483402)
chr6 (142-250)||(12589995-12590103)
chr6 (20-54)||(12590197-12590231)
chr6 (58-90)||(12483450-12483482)
[»] chr8 (1 HSPs)
chr8 (169-270)||(12641287-12641388)


Alignment Details
Target: chr7 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 135 - 270
Target Start/End: Complemental strand, 3417471 - 3417336
Alignment:
Q  135 caagaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatat 234  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  3417471 caagaacaacccatatgaatgggtgacccgatgcttctattgcgtatgcaatctcatatagttgtttatcagagaaatagtttaagcttccaaaacatat 3417372  T
Q  235 gtacaacactgagttaacttgttgtgagttgagcca 270  Q
    ||||||||||||||||||||||||||||||||||||    
T  3417371 gtacaacactgagttaacttgttgtgagttgagcca 3417336  T

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Target: chr7; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 15 - 90
Target Start/End: Complemental strand, 3417591 - 3417516
Alignment:
Q  15 gaacctgtggggcccaacccctaacgatcaaacccttctttccaatgtttctctcctcaaatcccttcgacaacca 90  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3417591 gaacctgtggggcccaacccctaacgatcaaacccttctttccaatgtttctctcctcaaatcccttcggcaacca 3417516  T

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Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 138 - 270
Target Start/End: Original strand, 28385572 - 28385704
Alignment:
Q  138 gaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgta 237  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||    
T  28385572 gaacaacccatatgaatgggtgacctgatgcttctactgcgcatgcaatctcatatagttgtttatcagagaaatggtttatgcttccaaaacatatgta 28385671  T
Q  238 caacactgagttaacttgttgtgagttgagcca 270  Q
    ||  |||||||||||| | ||||| ||||||||    
T  28385672 cacaactgagttaactcgctgtgatttgagcca 28385704  T

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Target: chr5; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 138 - 270
Target Start/End: Original strand, 12540923 - 12541055
Alignment:
Q  138 gaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgta 237  Q
    ||||||||||||||||||||||||||  | |||||| ||| ||||||||||||||||||||||| ||| ||||||  || | ||||||||||||||||||    
T  12540923 gaacaacccatatgaatgggtgacccattccttctactgcacatgcaatctcatatagttgtttgtcaaagaaatgatttatgcttccaaaacatatgta 12541022  T
Q  238 caacactgagttaacttgttgtgagttgagcca 270  Q
    || ||||||||||||||| ||||||||||||||    
T  12541023 caccactgagttaacttgctgtgagttgagcca 12541055  T

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Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 12540801 - 12540868
Alignment:
Q  16 aacctgtggggcccaacccctaacgatcaaacccttctttccaatgtttctctcctcaaatcccttcg 83  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  12540801 aacctgtggggcccaacccctaatgatcaaacccttttttccaatgtttctctcctcaaatcccttcg 12540868  T

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Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 28385447 - 28385515
Alignment:
Q  13 cagaacctgtggggcccaacccctaacgatcaaacccttctttccaatgtttctctcctcaaatccctt 81  Q
    |||||| ||||||||||||||||| |  || ||||||||||||||||||||||||||||||||||||||    
T  28385447 cagaacttgtggggcccaacccctgattatgaaacccttctttccaatgtttctctcctcaaatccctt 28385515  T

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Target: chr2 (Bit Score: 89; Significance: 6e-43; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 138 - 254
Target Start/End: Original strand, 13440438 - 13440554
Alignment:
Q  138 gaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgta 237  Q
    ||||||||||||||||||||||||  ||||||||||||||||| || |||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  13440438 gaacaacccatatgaatgggtgactagatgcttctattgcgcacgccatctcatatagttgtttatcagagaaatagttgatgcttccaaaacatatgta 13440537  T
Q  238 caacactgagttaactt 254  Q
    |||||| ||||||||||    
T  13440538 caacaccgagttaactt 13440554  T

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Target: chr2; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 138 - 253
Target Start/End: Original strand, 13448601 - 13448716
Alignment:
Q  138 gaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgta 237  Q
    ||||||||||||||||||||||||| ||||||||||| || ||||| ||||| ||||||||||||||||| |||||||| | ||||||||||||||||||    
T  13448601 gaacaacccatatgaatgggtgaccggatgcttctatcgcacatgccatctcgtatagttgtttatcagaaaaatagttgatgcttccaaaacatatgta 13448700  T
Q  238 caacactgagttaact 253  Q
    ||||||||||||||||    
T  13448701 caacactgagttaact 13448716  T

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Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 138 - 253
Target Start/End: Original strand, 13455072 - 13455187
Alignment:
Q  138 gaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgta 237  Q
    |||||||||||||||| || ||||| | |||||||| || |||||| ||||||||||||||||||| |||  |||| || | ||||||||||||||||||    
T  13455072 gaacaacccatatgaacggttgacctgctgcttctagtgagcatgccatctcatatagttgtttattagatgaataattgatgcttccaaaacatatgta 13455171  T
Q  238 caacactgagttaact 253  Q
    ||| ||||||||||||    
T  13455172 caatactgagttaact 13455187  T

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Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 13448479 - 13448546
Alignment:
Q  16 aacctgtggggcccaacccctaacgatcaaacccttctttccaatgtttctctcctcaaatcccttcg 83  Q
    ||||||||||||||||||||||| ||||||||||||||| || || |||||||| |||||||||||||    
T  13448479 aacctgtggggcccaacccctaatgatcaaacccttcttcccgatatttctctcttcaaatcccttcg 13448546  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 13454954 - 13455024
Alignment:
Q  20 tgtggggcccaacccctaacgatcaaacccttctttccaatgtttctctcctcaaatcccttcgacaacca 90  Q
    ||||||||||||||||||| |||||||||||| ||  | |||||| |||| ||||||||||||| ||||||    
T  13454954 tgtggggcccaacccctaatgatcaaaccctttttctcgatgtttttctcttcaaatcccttcggcaacca 13455024  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 13440320 - 13440390
Alignment:
Q  20 tgtggggcccaacccctaacgatcaaacccttctttccaatgtttctctcctcaaatcccttcgacaacca 90  Q
    ||||||||||||||| ||| |||||||||| || | | |||||||||||| || |||||||| | ||||||    
T  13440320 tgtggggcccaacccttaatgatcaaacccatcctcctaatgtttctctcttcgaatccctttggcaacca 13440390  T

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Target: scaffold0536 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 138 - 250
Target Start/End: Complemental strand, 6449 - 6337
Alignment:
Q  138 gaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgta 237  Q
    |||||||||||||||||  ||||||||||||||||||  | ||||||||||| || ||||||||||| | ||||  |   ||||||||||| ||||||||    
T  6449 gaacaacccatatgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttatccgggaaaaggcataagcttccaaagcatatgta 6350  T
Q  238 caacactgagtta 250  Q
    |||||||||||||    
T  6349 caacactgagtta 6337  T

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Target: scaffold0536; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 270
Target Start/End: Complemental strand, 1373 - 1271
Alignment:
Q  168 cttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgtacaacactgagttaacttgttgtgagttgag 267  Q
    |||||| ||| | |||||||||||| | ||||||||||| |||||||   ||| ||||||| |||||||| |  ||||||||| || | | |||||||||    
T  1373 cttctagtgcacttgcaatctcatacaattgtttatcagggaaatagcaaaaggttccaaagcatatgtagagtactgagttatctcgctttgagttgag 1274  T
Q  268 cca 270  Q
    |||    
T  1273 cca 1271  T

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Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 140 - 249
Target Start/End: Original strand, 48974349 - 48974458
Alignment:
Q  140 acaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgtaca 239  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||||||| | ||| |||| || ||||| |   | ||| || ||||||||||| |    
T  48974349 acaacccatatgaattggtgacccgatgcttctattgcgcttgcaatctcatacaattgcttattagtgaaatggcagaggctcccgaaacatatgtaga 48974448  T
Q  240 acactgagtt 249  Q
     |||||||||    
T  48974449 gcactgagtt 48974458  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 138 - 250
Target Start/End: Original strand, 48958385 - 48958497
Alignment:
Q  138 gaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgta 237  Q
    ||||||||||||  |||  |||||| |||||||||||  | || ||||||||||| |||||||||||||| |||||    | ||||||||| ||||||||    
T  48958385 gaacaacccatacaaattcgtgacctgatgcttctatcccacacgcaatctcataaagttgtttatcagataaataacatatgcttccaaagcatatgta 48958484  T
Q  238 caacactgagtta 250  Q
    |||||||||||||    
T  48958485 caacactgagtta 48958497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 48965442 - 48965510
Alignment:
Q  13 cagaacctgtggggcccaacccctaacgatcaaacccttctttccaatgtttctctcctcaaatccctt 81  Q
    ||||||||| || |||||||||||||  ||||||||||||||||||||||||||||| || ||||||||    
T  48965442 cagaacctgcggagcccaacccctaataatcaaacccttctttccaatgtttctctcttcgaatccctt 48965510  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 138 - 270
Target Start/End: Complemental strand, 48912283 - 48912151
Alignment:
Q  138 gaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgta 237  Q
    |||||||||||||||||  ||||| ||||||||| ||  |||| ||||||||||| ||||||||||| || ||||       ||||||||| ||||||||    
T  48912283 gaacaacccatatgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacattggcttccaaagcatatgta 48912184  T
Q  238 caacactgagttaacttgttgtgagttgagcca 270  Q
    || ||| |||||| ||||||  ||||| |||||    
T  48912183 caccaccgagttatcttgtttcgagttaagcca 48912151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 48958264 - 48958337
Alignment:
Q  20 tgtggggcccaacccctaacgatcaaacc---cttctttccaatgtttctctcctcaaatcccttcgacaacca 90  Q
    ||||||||||| ||||||| |||||||||   ||||||||||||||||||||| || ||||| |||| ||||||    
T  48958264 tgtggggcccaccccctaatgatcaaacctttcttctttccaatgtttctctcttcgaatcctttcggcaacca 48958337  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 48961413 - 48961486
Alignment:
Q  20 tgtggggcccaacccctaacgatcaaacccttctt---tccaatgtttctctcctcaaatcccttcgacaacca 90  Q
    ||||||||||| ||| ||| |||||||||||||||   | ||||||||||||| |||||||| |||| ||||||    
T  48961413 tgtggggcccaccccttaatgatcaaacccttcttcttttcaatgtttctctcttcaaatcctttcggcaacca 48961486  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 204
Target Start/End: Original strand, 48965587 - 48965633
Alignment:
Q  158 tgacccgatgcttctattgcgcatgcaatctcatatagttgtttatc 204  Q
    |||||||||||||||||||| || ||||||||||| || ||||||||    
T  48965587 tgacccgatgcttctattgcacacgcaatctcataaagctgtttatc 48965633  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 138 - 246
Target Start/End: Complemental strand, 12483402 - 12483294
Alignment:
Q  138 gaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgta 237  Q
    |||||||||||||||||   | |||||||||||||||| |||||| ||| || || || |||||||||||||||| |   | ||| ||||| ||||||||    
T  12483402 gaacaacccatatgaattttttacccgatgcttctattccgcatgaaatttcgtaaagctgtttatcagagaaattgcataggctcccaaagcatatgta 12483303  T
Q  238 caacactga 246  Q
    |||||||||    
T  12483302 caacactga 12483294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 250
Target Start/End: Complemental strand, 12590103 - 12589995
Alignment:
Q  142 aacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgtacaac 241  Q
    |||||||| ||||  ||| || |||||||||||  | || | ||||||||| ||||||||||| |||||||||   | ||| ||||| ||||||||||||    
T  12590103 aacccatacgaattcgtggcctgatgcttctatgccacacgaaatctcataaagttgtttatctgagaaatagcatatgctcccaaagcatatgtacaac 12590004  T
Q  242 actgagtta 250  Q
    || ||||||    
T  12590003 acagagtta 12589995  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 12590231 - 12590197
Alignment:
Q  20 tgtggggcccaacccctaacgatcaaacccttctt 54  Q
    ||||||||||||||||||| |||||||||||||||    
T  12590231 tgtggggcccaacccctaatgatcaaacccttctt 12590197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 90
Target Start/End: Complemental strand, 12483482 - 12483450
Alignment:
Q  58 aatgtttctctcctcaaatcccttcgacaacca 90  Q
    |||||||||||||||||||||||||| ||||||    
T  12483482 aatgtttctctcctcaaatcccttcggcaacca 12483450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 270
Target Start/End: Complemental strand, 12641388 - 12641287
Alignment:
Q  169 ttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgtacaacactgagttaacttgttgtgagttgagc 268  Q
    ||||||| |||  |||||||| || ||||||||||||||||||||    | ||| |||||||||||||| |||||||| ||| |||| | ||| ||||||    
T  12641388 ttctattccgctcgcaatctcgtaaagttgtttatcagagaaataagagatgctcccaaaacatatgtataacactgaattatcttgctttgaattgagc 12641289  T
Q  269 ca 270  Q
    ||    
T  12641288 ca 12641287  T

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