View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2811_1D_low_26 (Length: 269)
Name: NF2811_1D_low_26
Description: NF2811_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2811_1D_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 24 - 255
Target Start/End: Complemental strand, 6932693 - 6932462
Alignment:
| Q |
24 |
ctatgtttaggcataaattactattatttgagtagttgtcaatatttctttgctaaccatttttaagagggtttattaacctttatgtttcctgtttatt |
123 |
Q |
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| T |
6932693 |
ctatgtttaggcataaattactataatttgagtagttgttaatatttctttgctaaccatttttaagaaggtttattaacctttaggtttcctgtttatt |
6932594 |
T |
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| Q |
124 |
agcctatactaggatttttctaaggtgaataacatatatcagtgggttgcacaaattgatttaaccctgaagatgctgcataagcaagttttaaagataa |
223 |
Q |
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| T |
6932593 |
agcctatactaggatttttctaaggtgaataacatatatcagtgggttgcacaaattgatttaaccctgaagatgctgcataagcaagttttaaagataa |
6932494 |
T |
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| Q |
224 |
taaaaatttagaagagttacatatgaagtgga |
255 |
Q |
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||| ||||||||||||||||||||||||||| |
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| T |
6932493 |
gaaacatttagaagagttacatatgaagtgga |
6932462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 97 - 255
Target Start/End: Original strand, 6485990 - 6486148
Alignment:
| Q |
97 |
tattaacctttatgtttcctgtttattagcctatactaggatttttctaaggtgaataacatatatcagtgggttgcacaaattgatttaaccctgaaga |
196 |
Q |
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| T |
6485990 |
tattaacctttatgtttcctgtttattagcctatactaggatttctcgaaggtgaataacatatatcagtgggttgcacaaattgatttaaccctgaaga |
6486089 |
T |
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| Q |
197 |
tgctgcataagcaagttttaaagataataaaaatttagaagagttacatatgaagtgga |
255 |
Q |
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| T |
6486090 |
tgctgcatacgtaagttttaaagataagaaacatttagaagagttacatatgaagtgga |
6486148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 186
Target Start/End: Complemental strand, 4623380 - 4623301
Alignment:
| Q |
107 |
tatgtttcctgtttattagcctatactaggatttttctaaggtgaataacatatatcagtgggttgcacaaattgattta |
186 |
Q |
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||||||||| |||||||||| |||||| ||||||| | |||| ||||||||||| ||| |||||||||||||||||| |
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| T |
4623380 |
tatgtttccattttattagccaatactataatttttccatggtgtataacatatatttgtgtgttgcacaaattgattta |
4623301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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