View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2811_1D_low_27 (Length: 265)
Name: NF2811_1D_low_27
Description: NF2811_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2811_1D_low_27 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 16 - 265
Target Start/End: Complemental strand, 1702178 - 1701929
Alignment:
| Q |
16 |
gacatcagggtgagcgatgtttctactatatgacgatgtttgcgttctgcaataccaatatgttcgggagtgtacggtgggctgatatcgtgagatatac |
115 |
Q |
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| T |
1702178 |
gacatgagggtgagcgatgtttctactatatgacgatgtttgcgttctgcaataccaatatgttcgggagtgtacggtgggctgatatagtgagatatac |
1702079 |
T |
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| Q |
116 |
catgagagttaagatatggcttgagttttatgtattcagtgccaccatcggtgtagagggatttaactttgtatgaaaacatagtttcaacttttgaatg |
215 |
Q |
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| T |
1702078 |
catgagagttaagatatggcttgagttttatgtattcagtgccaccatcggtgtagagggatttaactttgtatgaaaacatagtttcaacttttgaatg |
1701979 |
T |
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| Q |
216 |
aaaatttggaaatatagtaacaacatcagttttactttttaacagataaa |
265 |
Q |
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| T |
1701978 |
aaaatttggaaatatagtaacaacatcagttttactttttaacggataaa |
1701929 |
T |
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Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 34 - 187
Target Start/End: Complemental strand, 5400896 - 5400743
Alignment:
| Q |
34 |
gtttctactatatgacgatgtttgcgttctgcaataccaatatgttcgggagtgtacggtgggctgatatcgtgagatataccatgagagttaagatatg |
133 |
Q |
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| T |
5400896 |
gtttctactatatggcggtgtttgcgttcagcaatgccaatgtgttcaggagtataaggtgggctaatgtaatgggatattccatgtgtattgaaatatg |
5400797 |
T |
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| Q |
134 |
gcttgagttttatgtattcagtgccaccatcggtgtagagggatttaactttgt |
187 |
Q |
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| T |
5400796 |
gcttgagtttaaagtattcagttccaccatcagtgtaaatagatttgactttgt |
5400743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 34 - 187
Target Start/End: Complemental strand, 3541871 - 3541718
Alignment:
| Q |
34 |
gtttctactatatgacgatgtttgcgttctgcaataccaatatgttcgggagtgtacggtgggctgatatcgtgagatataccatgagagttaagatatg |
133 |
Q |
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| T |
3541871 |
gtttctactatatggcggtgtttgcgttcagcaatgccaatgtgttcaggagtataaggtgggctaatgtaatgggatattccatgtgtattgaaatatg |
3541772 |
T |
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| Q |
134 |
gcttgagttttatgtattcagtgccaccatcggtgtagagggatttaactttgt |
187 |
Q |
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| T |
3541771 |
gcttgagtttaaagtattcagttccaccatcagtgtaaatagatttgactttgt |
3541718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 95
Target Start/End: Original strand, 26592278 - 26592339
Alignment:
| Q |
34 |
gtttctactatatgacgatgtttgcgttctgcaataccaatatgttcgggagtgtacggtgg |
95 |
Q |
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| T |
26592278 |
gtttcgactatatggcaatgtttgcgttctgcaatgccaatatgttcaggagtgtaaggtgg |
26592339 |
T |
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