View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2811_1D_low_29 (Length: 251)
Name: NF2811_1D_low_29
Description: NF2811_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2811_1D_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 12 - 228
Target Start/End: Complemental strand, 32191318 - 32191102
Alignment:
| Q |
12 |
gaaaaataaacaaattgtttttagaagaactaacagatctatcactgtttgaaatggctttactcaaatcgtctcataaaaaggacatgtaaagcctaca |
111 |
Q |
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| T |
32191318 |
gaaaaataaacaaattgtttttagaagaactaacagatctatcactgtttgaaatggctttactcaaatcgtctcataaaaaggacatgtaaagcctaca |
32191219 |
T |
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| Q |
112 |
ggggttcgtgtaaaccttttacgtttacatgcatgaaattttgaactatcttttatgtgatatttgattattgtttgnnnnnnnnttgaccgtcactttt |
211 |
Q |
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| T |
32191218 |
ggggttcgtgtaaaccttttacgtttacatgcatgaaattttgaactatcttttctgtgatatttgattattgtttgaaaaaaaattgaccgtcactttt |
32191119 |
T |
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| Q |
212 |
tggtgataaatatgaag |
228 |
Q |
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||||||||||||||||| |
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| T |
32191118 |
tggtgataaatatgaag |
32191102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 48 - 188
Target Start/End: Complemental strand, 7736522 - 7736382
Alignment:
| Q |
48 |
atctatcactgtttgaaatggctttactcaaatcgtctcataaaaaggacatgtaaagcctacaggggttcgtgtaaaccttttacgtttacatgcatga |
147 |
Q |
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|||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7736522 |
atctatcactgtttgaaatggcattactcaagtcgtctcataaaaaggacatgtaaagcctacaggggttcgtgtaaaccttttacgtttacatgcatga |
7736423 |
T |
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| Q |
148 |
aattttgaactatcttttatgtgatatttgattattgtttg |
188 |
Q |
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| T |
7736422 |
aattttgaactatcttttctgtaatatttgattattgtttg |
7736382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 48 - 188
Target Start/End: Original strand, 32190607 - 32190746
Alignment:
| Q |
48 |
atctatcactgtttgaaatggctttactcaaatcgtctcataaaaag-gacatgtaaagcctacaggggttcgtgtaaaccttttacgtttacatgcatg |
146 |
Q |
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|||||||||||||||||||||| |||||||| |||||||||||||| |||||||||| ||||| || ||||||||||||||||||||||||||||||| |
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| T |
32190607 |
atctatcactgtttgaaatggcattactcaagtcgtctcataaaaactgacatgtaaa--ctacatggattcgtgtaaaccttttacgtttacatgcatg |
32190704 |
T |
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| Q |
147 |
aaattttgaactatcttttatgtgatatttgattattgtttg |
188 |
Q |
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||||||||||||||||||| |||||||||||||||||||||| |
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| T |
32190705 |
aaattttgaactatcttttctgtgatatttgattattgtttg |
32190746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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