View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2811_1D_low_3 (Length: 575)
Name: NF2811_1D_low_3
Description: NF2811_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2811_1D_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 530; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 16 - 553
Target Start/End: Original strand, 32725113 - 32725650
Alignment:
| Q |
16 |
gacatcagtcacatttgtcaacaaaatttgagatccttcaacgatcaaaaaactaccataagtggaacttaacatgagacattaaaccaataattgtttc |
115 |
Q |
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| T |
32725113 |
gacatcagtcacatttgtcaacaaaatttaagatccttcaacgatcaaaaaactaccataagtggaacttaacatgagacattaaaccaataattgtttc |
32725212 |
T |
|
| Q |
116 |
catttttagagggtcagtaaataaaaaacaattagaaaggcacatggcatgaataattgattgtttagctagtatagattagcacttaattaatcagcat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32725213 |
catttttagagggtcagtaaataaaaaacaattagaaaggcacatggcatgaataattgattgtttagctagtatagattagcacttaattaatcagcat |
32725312 |
T |
|
| Q |
216 |
cctataaatcagaatctgaagaagaacaagtccaaagggaagcagaaagcaaacgtcttgatttccaatccaacaccaacttattactacccacacccac |
315 |
Q |
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| T |
32725313 |
cctataaatcagaatctgaagaagaacaagtccaaagggaagcagaaagcaaacgtcttgatttccaatccaacaccaacttattactacccacacccac |
32725412 |
T |
|
| Q |
316 |
ctcttcaaccctatacccatcattaaaaagccctaacaacagcttcgcttgacaatgatttgcaaagctcaccggaactcccctaaaccctacctcacct |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32725413 |
ctcttcaaccctatacccatcattaaaaagccctaacaacagctttgcttgacaatgatttgcaaagctcaccggaactcccctaaaccctacctcacct |
32725512 |
T |
|
| Q |
416 |
aaccactccccccatgaccttctctcctcttcaccacccgttctatatatccggcccaacgagcctgcaattctaggcccaaaaaataccctctccacca |
515 |
Q |
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| T |
32725513 |
aaccactccccccatgaccttctctcctcttcaccacccgttctatatatccggcccaacgagcctgcaattctaggcccaaaaaataccctctccacca |
32725612 |
T |
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| Q |
516 |
aagtccgggcccggttctgcatcggaaaaccagcctcc |
553 |
Q |
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| T |
32725613 |
aagtccgggcccggttctgcatcggaaaaccagcctcc |
32725650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 241 - 429
Target Start/End: Original strand, 24256355 - 24256537
Alignment:
| Q |
241 |
acaagtccaaagggaagcagaaagcaaacgtcttgatttccaatccaacaccaacttattactacccacacccacctcttcaaccctatacccatcatta |
340 |
Q |
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||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||| | ||||| |||||| |||||||||||||| ||| |
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| T |
24256355 |
acaagtccaaacagaagcagaaagcaaacgtcttgatttccaacctaacaccaacttattgtt------acccaactcttccaccctatacccatcgtta |
24256448 |
T |
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| Q |
341 |
aaaagccctaacaacagcttcgcttgacaatgatttgcaaagctcaccggaactcccctaaaccctacctcacctaaccactcccccca |
429 |
Q |
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|| | || || |||| ||| ||||||||||| || || |||| | |||||| || |||||| || |||| |||||||||||||| |
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| T |
24256449 |
aataaacccaataacaactttgcttgacaatggttaccatagcttatgttaactcctctgaacccttccacacccaaccactcccccca |
24256537 |
T |
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