View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2811_1D_low_30 (Length: 248)
Name: NF2811_1D_low_30
Description: NF2811_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2811_1D_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 24 - 224
Target Start/End: Original strand, 41917737 - 41917937
Alignment:
| Q |
24 |
tcatgactatacagaagatgttgaattatgtccactagggtctttaaatnnnnnnnggaagaatagccaaaatgatgttaatgatcagccgcaaaaaaca |
123 |
Q |
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| T |
41917737 |
tcatgactatacagaagatgttgaattatatccactagggtctttaaataaaaaaaggaagaatagccaaaatgatgttaatgatcagccgcaaaaaaca |
41917836 |
T |
|
| Q |
124 |
cctaaaaggaagaaatatcaacctaaagtggtgtctccgtatccagagaaattaaagaaattccatcccggaagcaacggcactccaaaaccttcaactc |
223 |
Q |
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| T |
41917837 |
gccaaaaggaagaaatatcaacctaaagtggtgtctccgtatccagagaaattaaagaaattccatcccggaagcaacggcactccaaaaccatcaactc |
41917936 |
T |
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| Q |
224 |
c |
224 |
Q |
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| T |
41917937 |
c |
41917937 |
T |
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