View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2811_1D_low_32 (Length: 236)
Name: NF2811_1D_low_32
Description: NF2811_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2811_1D_low_32 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 4 - 230
Target Start/End: Original strand, 41658462 - 41658688
Alignment:
| Q |
4 |
gactgatatgaatatttgttgaatttacaacttaaatagttaaatttcatgatatacacaaagcaaatcatggataagtatatttcttacttgcatatag |
103 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
41658462 |
gactgatatcaatatttgttgaatttacaacttaaatagttaaatttcatgatatacacaaagcaaatcatggataagtatatttcttacttgcatacag |
41658561 |
T |
|
| Q |
104 |
gaggccaatatgcatgaattttctcctctgaagtatacacaagatgcaggtgatccttccactccaatactgactcggcatgaggactaaaactagtggc |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
41658562 |
gaggccaatatgcatgaattttctcctctgaagtatacacaagatgcaggtgatccttccactccaatactgactcagcatgaggactaaaactagtggc |
41658661 |
T |
|
| Q |
204 |
caacctcacaacatcaggtggtgaatt |
230 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
41658662 |
caacctcacaacatcaggtggtgaatt |
41658688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 84 - 230
Target Start/End: Original strand, 14629868 - 14630014
Alignment:
| Q |
84 |
tatttcttacttgcatataggaggccaatatgcatgaattttctcctctgaagtatacacaagatgcaggtgatccttccactccaatactgactcggca |
183 |
Q |
| |
|
|||| |||||||||||| | |||||||||||||||||||||||| ||||||||||||||||| |||| || ||||||||||||||| |||||||| ||| |
|
|
| T |
14629868 |
tattacttacttgcatacaacaggccaatatgcatgaattttctcttctgaagtatacacaagctgcaagtaatccttccactccaacactgactcagca |
14629967 |
T |
|
| Q |
184 |
tgaggactaaaactagtggccaacctcacaacatcaggtggtgaatt |
230 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
14629968 |
tgagggctaaaactagtggccaacctcacaacttcaggaggtgaatt |
14630014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 89 - 229
Target Start/End: Original strand, 14644941 - 14645081
Alignment:
| Q |
89 |
cttacttgcatataggaggccaatatgcatgaattttctcctctgaagtatacacaagatgcaggtgatccttccactccaatactgactcggcatgagg |
188 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||||| ||||||||||||||||| ||| || |||||||||||||||||||||||| ||| |||| |
|
|
| T |
14644941 |
cttacttgcatacagcaggccaatatgcatgaattttctcttctgaagtatacacaagccgcaagtaatccttccactccaatactgactcagcaagagg |
14645040 |
T |
|
| Q |
189 |
actaaaactagtggccaacctcacaacatcaggtggtgaat |
229 |
Q |
| |
|
|||||||| |||| |||||||||||| ||||||||||||| |
|
|
| T |
14645041 |
gctaaaactggtggacaacctcacaacttcaggtggtgaat |
14645081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University