View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2811_1D_low_37 (Length: 226)
Name: NF2811_1D_low_37
Description: NF2811_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2811_1D_low_37 |
 | |
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| [»] scaffold0300 (1 HSPs) |
| | |
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| [»] scaffold0140 (1 HSPs) |
| | |
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| [»] scaffold0121 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 3437300 - 3437088
Alignment:
| Q |
1 |
gttgatggctgtcatctaaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3437300 |
gttgatggctgtcatctaaagacaaagtatggtggtcaactgctcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattg |
3437201 |
T |
|
| Q |
101 |
ttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3437200 |
ttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaa |
3437101 |
T |
|
| Q |
201 |
ggtaagtgatgtc |
213 |
Q |
| |
|
|||||||| |||| |
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|
| T |
3437100 |
ggtaagtgttgtc |
3437088 |
T |
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Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 46240179 - 46240383
Alignment:
| Q |
1 |
gttgatggctgtcatctaaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattg |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46240179 |
gttgatggttgtcatctaaagacaaagtatgggggtcaactgctcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattg |
46240278 |
T |
|
| Q |
101 |
ttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46240279 |
ttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaa |
46240378 |
T |
|
| Q |
201 |
ggtaa |
205 |
Q |
| |
|
||||| |
|
|
| T |
46240379 |
ggtaa |
46240383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 4 - 203
Target Start/End: Original strand, 23541576 - 23541775
Alignment:
| Q |
4 |
gatggctgtcatctaaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttg |
103 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||| || || | ||||||||| |||||||||||||| || ||||| | |||||||| || || | |
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|
| T |
23541576 |
gatggatgtcatttaaagacaaagtatgggggtcaacttctaatagttgttggtagggacccaaatgaccaatattttccattggcatttggaatagtag |
23541675 |
T |
|
| Q |
104 |
aaactgagtgcagggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggt |
203 |
Q |
| |
|
|||| |||| |||| ||||||||| |||||||||||| | | ||||||||||||| | |||| |||||||| |||||||||||||| |||||||| |
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|
| T |
23541676 |
aaacaaagtgtagggaaagctggaaatggttcatggagcttttaatggatgacattggaagggataggagatatgtcttcatatcagatcaacagaaggt |
23541775 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 31 - 204
Target Start/End: Complemental strand, 30038307 - 30038134
Alignment:
| Q |
31 |
gggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagt |
130 |
Q |
| |
|
||||||||||| | |||||||| || |||||||||||||||||||| ||||| || || ||||| | |||||||||||||||| || || ||||| | |
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|
| T |
30038307 |
gggggtcaactgttgattgctgtaggaagagacccaaatgaccagtattttccactagcttttggggtagttgaaactgagtgcaaggaaacttggaaat |
30038208 |
T |
|
| Q |
131 |
ggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta |
204 |
Q |
| |
|
|||||| | |||||||| |||| || || || ||||||| |||||||| |||||||||||||| || |||||| |
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|
| T |
30038207 |
ggttcacgcagttgctgatggaagatataggtgaagataagagatatgtgttcatatcagatcaacaaaaggta |
30038134 |
T |
|
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Target: chr5 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 28 - 204
Target Start/End: Original strand, 29878233 - 29878409
Alignment:
| Q |
28 |
tatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctgga |
127 |
Q |
| |
|
|||||||| ||||| | |||||||| || |||||||||||||||||||| ||||| || || ||||| | |||||||||||||||| || ||| |||| |
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|
| T |
29878233 |
tatggggggcaactgttgattgctgtaggaagagacccaaatgaccagtattttccactagcttttggggtagttgaaactgagtgcaaggaaagttgga |
29878332 |
T |
|
| Q |
128 |
agtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta |
204 |
Q |
| |
|
| |||||||| |||||||| |||| || || || ||||||| |||||||| |||||||||||||| || |||||| |
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|
| T |
29878333 |
aatggttcatacagttgctgatggaagatataggtcaagataagagatatgtgttcatatcagatcaacaaaaggta |
29878409 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 46 - 204
Target Start/End: Complemental strand, 3921357 - 3921199
Alignment:
| Q |
46 |
attgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgc |
145 |
Q |
| |
|
|||||||| || |||||||||||||||||||| ||||| || || ||||| | |||||||||||||||| || ||| ||||| |||||||| |||||| |
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|
| T |
3921357 |
attgctgtaggaagagacccaaatgaccagtattttccactagcttttggggtagttgaaactgagtgcaaggaaagttggaaatggttcatacagttgc |
3921258 |
T |
|
| Q |
146 |
tgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta |
204 |
Q |
| |
|
|| |||| || || || ||||||| |||||||| |||||||||||||| || |||||| |
|
|
| T |
3921257 |
tgatggaagatataggtcaagataagagatatgtgttcatatcagatcaacaaaaggta |
3921199 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 1e-24; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 28 - 204
Target Start/End: Original strand, 6869027 - 6869201
Alignment:
| Q |
28 |
tatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctgga |
127 |
Q |
| |
|
|||||||| ||||| | |||||||| || |||||||||||||||||||||||||| || || ||||| | |||||||||||||||| || ||| |||| |
|
|
| T |
6869027 |
tatgggggccaactgttgattgctgtagggagagacccaaatgaccagtactttccactagcttttggggtagttgaaactgagtgcaaggaaagttgga |
6869126 |
T |
|
| Q |
128 |
agtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta |
204 |
Q |
| |
|
| ||||||||| |||||||| |||| || || || ||||| |||| |||| |||||||||||||| || |||||| |
|
|
| T |
6869127 |
aatggttcatgcagttgctgatggaagatataggtcaagat--aagagatgtgttcatatcagatcaacaaaaggta |
6869201 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 49 - 204
Target Start/End: Complemental strand, 4497377 - 4497222
Alignment:
| Q |
49 |
gctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgt |
148 |
Q |
| |
|
|||||||| || ||||| ||||||||||| ||||| || || ||||| |||||||| ||| | | |||||||||||| ||||| |||||| || || |
|
|
| T |
4497377 |
gctgttggaagggaccccaatgaccagtattttccactggcctttggtgttgttgaagttgaaagtaaggcaagctggaaatggtttatggagctgttga |
4497278 |
T |
|
| Q |
149 |
tggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta |
204 |
Q |
| |
|
|| ||||||| || || |||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
4497277 |
tgaatgacataggaaatgataaaagatatgtcttcatatcagatcaacagaaggta |
4497222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 11318385 - 11318291
Alignment:
| Q |
1 |
gttgatggctgtcatctaaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttgg |
95 |
Q |
| |
|
|||||||| |||||||||||||| | ||||| || ||||| || ||||| |||| |||||||||||||| || || |||||| | |||||||| |
|
|
| T |
11318385 |
gttgatggttgtcatctaaagactagatatggaggacaacttcttattgcagttgcaagagacccaaatgatcaatattttcctttagcatttgg |
11318291 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0300 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0300
Description:
Target: scaffold0300; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 49 - 204
Target Start/End: Original strand, 18134 - 18289
Alignment:
| Q |
49 |
gctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgt |
148 |
Q |
| |
|
|||||||| || ||||| ||||||||||| ||||| || || ||||| |||||||| || | | |||||||||||| ||||| |||||| || || |
|
|
| T |
18134 |
gctgttggaagggaccccaatgaccagtattttcccctggcctttggtgttgttgaagtagaaagtaaggcaagctggaaatggtttatggagctgttga |
18233 |
T |
|
| Q |
149 |
tggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta |
204 |
Q |
| |
|
|| ||||||| || || || ||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
18234 |
tgaatgacataggaaatgacaaaagatatgtcttcatatcagatcaacagaaggta |
18289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 49 - 204
Target Start/End: Complemental strand, 24676197 - 24676042
Alignment:
| Q |
49 |
gctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgt |
148 |
Q |
| |
|
|||||||| || ||||| ||||||||||| ||||| || || ||||| |||||||| || | | |||||||||||| ||||| |||||| || || |
|
|
| T |
24676197 |
gctgttggaagggaccccaatgaccagtattttccactggcctttggtgttgttgaagtagaaagtaaggcaagctggaaatggtttatggagctgttga |
24676098 |
T |
|
| Q |
149 |
tggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta |
204 |
Q |
| |
|
|| ||||||| || || || ||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
24676097 |
tgaatgacataggaaatgacaaaagatatgtcttcatatcagatcaacagaaggta |
24676042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 101 - 204
Target Start/End: Original strand, 36915336 - 36915439
Alignment:
| Q |
101 |
ttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaa |
200 |
Q |
| |
|
||||||||||||||| || ||| ||||| ||||||||| ||||||| |||| || || || ||||||| |||||||| |||||||||||||| || || |
|
|
| T |
36915336 |
ttgaaactgagtgcaaggaaagttggaaatggttcatgcagttgctaatggaagatataggtcaagataagagatatgtgttcatatcagatcaacaaaa |
36915435 |
T |
|
| Q |
201 |
ggta |
204 |
Q |
| |
|
|||| |
|
|
| T |
36915436 |
ggta |
36915439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0140 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 40135 - 40053
Alignment:
| Q |
1 |
gttgatggctgtcatctaaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcc |
83 |
Q |
| |
|
|||||||| |||||||| ||||| |||||||| ||| || | |||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
40135 |
gttgatgggtgtcatcttaagaccaagtatggaggtactcttttaattgttgttggtagagacccaaatgaccagtattttcc |
40053 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0121 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0121
Description:
Target: scaffold0121; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 43513 - 43607
Alignment:
| Q |
1 |
gttgatggctgtcatctaaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttgg |
95 |
Q |
| |
|
|||||||| |||||||||||||| | ||||| || ||||| || ||||| ||||| |||| ||||||||| || || |||||| | |||||||| |
|
|
| T |
43513 |
gttgatggttgtcatctaaagactagatatggaggacaacttcttattgcagttggaagaggcccaaatgatcaatattttcctttagcatttgg |
43607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 18131655 - 18131561
Alignment:
| Q |
1 |
gttgatggctgtcatctaaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttgg |
95 |
Q |
| |
|
|||||||| |||||||||||||| | ||||| || ||||| || ||||| ||||| |||| ||||||||| || || |||||| | |||||||| |
|
|
| T |
18131655 |
gttgatggttgtcatctaaagactagatatggaggacaacttcttattgcagttggaagaggcccaaatgatcaatattttcctttagcatttgg |
18131561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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