View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2811_1D_low_38 (Length: 224)
Name: NF2811_1D_low_38
Description: NF2811_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2811_1D_low_38 |
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Alignment Details
Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 5 - 205
Target Start/End: Original strand, 38551868 - 38552068
Alignment:
| Q |
5 |
ttatttttcttcaaatagcttttctaataaatacattacgtgaaccattattatttttctataaatagcataccatccatccnnnnnnnattcacttaat |
104 |
Q |
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| T |
38551868 |
ttatttttcttcaaatagattttctaataaatacattacgtgaaccattattatttttctataaatagcataccatacatcctttttttattcacttaat |
38551967 |
T |
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| Q |
105 |
caattcacaaatactctagctccaactccattctcactctaacatggctgtatcaatctcaaacatgctcatagcctttcccaaatccgaatccactttc |
204 |
Q |
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| T |
38551968 |
cgattcacaaagactccagctccaactccattctcactctaacatggctgtatcaatctcaaacatgctcatagcctttcccaaatccgaatccactttc |
38552067 |
T |
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| Q |
205 |
t |
205 |
Q |
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| T |
38552068 |
t |
38552068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 133 - 205
Target Start/End: Original strand, 38545597 - 38545669
Alignment:
| Q |
133 |
cattctcactctaacatggctgtatcaatctcaaacatgctcatagcctttcccaaatccgaatccactttct |
205 |
Q |
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| T |
38545597 |
cattctcactccaacatggctgcatcaatctctaagatcctcatagcctttcccaaatccgaatccactttct |
38545669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 38545480 - 38545532
Alignment:
| Q |
24 |
ttttctaataaatacattacgtgaaccattattatttttctataaatagcata |
76 |
Q |
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|||||||||||| |||| || | |||||||||||||||||||||||||||| |
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| T |
38545480 |
ttttctaataaaggaattatgtaagccattattatttttctataaatagcata |
38545532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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