View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2811_1D_low_4 (Length: 546)

Name: NF2811_1D_low_4
Description: NF2811_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2811_1D_low_4
NF2811_1D_low_4
[»] chr4 (1 HSPs)
chr4 (23-274)||(16990381-16990632)
[»] chr3 (4 HSPs)
chr3 (23-274)||(37241968-37242219)
chr3 (23-296)||(1258663-1258931)
chr3 (23-295)||(34873482-34873736)
chr3 (197-264)||(13809952-13810019)
[»] chr8 (2 HSPs)
chr8 (23-274)||(2319997-2320248)
chr8 (138-255)||(38544223-38544340)
[»] chr7 (1 HSPs)
chr7 (23-274)||(31234131-31234382)
[»] chr6 (1 HSPs)
chr6 (143-274)||(18246192-18246323)
[»] chr5 (4 HSPs)
chr5 (147-258)||(39087407-39087518)
chr5 (444-537)||(42551473-42551575)
chr5 (370-446)||(41687598-41687674)
chr5 (370-447)||(41659662-41659739)
[»] scaffold0295 (2 HSPs)
scaffold0295 (444-534)||(11105-11203)
scaffold0295 (444-531)||(11978-12073)
[»] chr2 (1 HSPs)
chr2 (147-251)||(20040174-20040276)
[»] scaffold0003 (1 HSPs)
scaffold0003 (444-537)||(157199-157300)


Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 23 - 274
Target Start/End: Original strand, 16990381 - 16990632
Alignment:
Q  23 aggtaagtcatgctttggttcacacacttaaagaggtttcaattattggtggtgtttctttgaaggtggttgctggttgtgggagatggagcctggaggg 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16990381 aggtaagtcatgctttggttcacacacttaaagaggtttcaattattggtggtgtttctttgaaggtggttgctggttgtgggagatggagcctggaggg 16990480  T
Q  123 agacggccacaaagctgggagcaagatgagaaaagtttggaaagtgaagctattgagatcagatgtgggagaacatgataagctttaatagaaatgcaca 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16990481 agacggccacaaagctgggagcaagatgagaaaagtttggaaagtgaagctattgagatcagatgtgggagaacatgataagctttaatagaaatgcaca 16990580  T
Q  223 atctaaccatttatcttgtgtgacccatggtgggaaggttttttaccttccc 274  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  16990581 atctaaccatttatcttgtgtgacccatggtggaaaggttttataccttccc 16990632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 23 - 274
Target Start/End: Complemental strand, 37242219 - 37241968
Alignment:
Q  23 aggtaagtcatgctttggttcacacacttaaagaggtttcaattattggtggtgtttctttgaaggtggttgctggttgtgggagatggagcctggaggg 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37242219 aggtaagtcatgctttggttcacacacttaaagaggtttcaattattggtggtgtttctttgaaggtggttgctggttgtgggagatggagcctggaggg 37242120  T
Q  123 agacggccacaaagctgggagcaagatgagaaaagtttggaaagtgaagctattgagatcagatgtgggagaacatgataagctttaatagaaatgcaca 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37242119 agacggccacaaagctgggagcaagatgagaaaagtttggaaagtgaagctattgagatcagatgtgggagaacatgataagctttaatagaaatgcaca 37242020  T
Q  223 atctaaccatttatcttgtgtgacccatggtgggaaggttttttaccttccc 274  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  37242019 atctaaccatttatcttgtgtgacccatggtaggaaggttttataccttccc 37241968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 23 - 296
Target Start/End: Complemental strand, 1258931 - 1258663
Alignment:
Q  23 aggtaagtcatgctttggttcacacacttaaagaggtttcaattattggtggtgtttctttgaaggtggttgctggttgtgggagatggagcctggaggg 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1258931 aggtaagtcatgctttggttcacacacttaaagaggtttcaattattggtggtgtttctttgaaggtggttgctggttgtgggagatggagcctagaggg 1258832  T
Q  123 agacggccacaaagctgggagcaagatgagaaaagtttggaaagtgaagctattgagatcagatgtgggagaacatgataagctttaatagaaatgcaca 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  1258831 agacggccacaaagctgggagcaagatgagaaaagtttggaaagtgaagctattgagatcagatgtgggagaacatgataagctttaatagaaatgcata 1258732  T
Q  223 atctaaccatttatcttgtgtgacccatggtgggaaggttttttaccttcccttcccatgtgaaatgccacctc 296  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||     ||||||||||||||||||||||||    
T  1258731 atctaaccatttatcttgtgtgatccatggtgggaaggttttata-----ccttcccatgtgaaatgccacctc 1258663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 23 - 295
Target Start/End: Original strand, 34873482 - 34873736
Alignment:
Q  23 aggtaagtcatgctttggttcacacacttaaagaggtttcaattattggtggtgtttctttgaaggtggttgctggttgtgggagatggagcctggaggg 122  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34873482 aggtaagtcatgctttggttcacccacttaaa-aggtttcaattattggtggtgtttctttgaaggtggttgctggttgtgggagatggagcctggaggg 34873580  T
Q  123 agacggccacaaagctgggagcaagatgagaaaagtttggaaagtgaagctattgagatcagatgtgggagaacatgataagctttaatagaaatgcaca 222  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  34873581 agacggccacaaagctgggagcaagatgacaaaagtttggaaagtgaagctattgagatcagatgtgggagaacatgataagctttaatagaaatgcac- 34873679  T
Q  223 atctaaccatttatcttgtgtgacccatggtgggaaggttttttaccttcccttcccatgtgaaatgccacct 295  Q
               |||||||||||| |||||||||||||||||| ||     |||||||||||||||||||||||    
T  34873680 -----------tatcttgtgtgatccatggtgggaaggttttata-----ccttcccatgtgaaatgccacct 34873736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 197 - 264
Target Start/End: Complemental strand, 13810019 - 13809952
Alignment:
Q  197 atgataagctttaatagaaatgcacaatctaaccatttatcttgtgtgacccatggtgggaaggtttt 264  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| || |||||    
T  13810019 atgataagctttaatagaagtgcacaatgtaaccatttatcttgtgtgacccatggtggaaaagtttt 13809952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 23 - 274
Target Start/End: Original strand, 2319997 - 2320248
Alignment:
Q  23 aggtaagtcatgctttggttcacacacttaaagaggtttcaattattggtggtgtttctttgaaggtggttgctggttgtgggagatggagcctggaggg 122  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2319997 aggtaagtcatgctttgtttcacacacttaaagaggtttcaattattggtggtgtttctttgaaggtggttgctggttgtgggagatggagcctggaggg 2320096  T
Q  123 agacggccacaaagctgggagcaagatgagaaaagtttggaaagtgaagctattgagatcagatgtgggagaacatgataagctttaatagaaatgcaca 222  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2320097 agacggccacaaagctgggagcaagatgagaaaaatttggaaagtgaagctattgagatcagatgtgggagaacatgataagctttaatagaaatgcaca 2320196  T
Q  223 atctaaccatttatcttgtgtgacccatggtgggaaggttttttaccttccc 274  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2320197 atctaaccatttatcttgtgtgacccatggtgggaaggttttataccttccc 2320248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 138 - 255
Target Start/End: Original strand, 38544223 - 38544340
Alignment:
Q  138 tgggagcaagatgagaaaagtttggaaagtgaagctattgagatcagatgtgggagaacatgataagctttaatagaaatgcacaatctaaccatttatc 237  Q
    |||||| |||||||||||||||||||| | ||| | |||   || || |||| |||| ||||||||| |||||||||| || |||||||||||||| |||    
T  38544223 tgggaggaagatgagaaaagtttggaatgagaaaccattagaattaggtgtgagagagcatgataagatttaatagaagtgtacaatctaaccattgatc 38544322  T
Q  238 ttgtgtgacccatggtgg 255  Q
    ||||||  ||||||||||    
T  38544323 ttgtgtttcccatggtgg 38544340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 228; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 23 - 274
Target Start/End: Complemental strand, 31234382 - 31234131
Alignment:
Q  23 aggtaagtcatgctttggttcacacacttaaagaggtttcaattattggtggtgtttctttgaaggtggttgctggttgtgggagatggagcctggaggg 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31234382 aggtaagtcatgctttggttcacacacttaaagaggtttcaattattggtggtgtttctttgaaggtggttgctggttgtgggagatggagcctggaggg 31234283  T
Q  123 agacggccacaaagctgggagcaagatgagaaaagtttggaaagtgaagctattgagatcagatgtgggagaacatgataagctttaatagaaatgcaca 222  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||    
T  31234282 agacgaccacaaagctgggagcaagatgagaaaagtttggaaagtgaagctattgagatcagatgtaggagaacatgataagctttaatagaaatgtaca 31234183  T
Q  223 atctaaccatttatcttgtgtgacccatggtgggaaggttttttaccttccc 274  Q
    |||||| |||||||||||||||| |||||||||||||||||| |||||||||    
T  31234182 atctaatcatttatcttgtgtgatccatggtgggaaggttttataccttccc 31234131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 124; Significance: 2e-63; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 143 - 274
Target Start/End: Complemental strand, 18246323 - 18246192
Alignment:
Q  143 gcaagatgagaaaagtttggaaagtgaagctattgagatcagatgtgggagaacatgataagctttaatagaaatgcacaatctaaccatttatcttgtg 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18246323 gcaagatgagaaaagtttggaaagtgaagctattgagatcagatgtgggagaacatgataagctttaatagaaatgcacaatctaaccatttatcttgtg 18246224  T
Q  243 tgacccatggtgggaaggttttttaccttccc 274  Q
    |||||||||||||||| ||||| |||||||||    
T  18246223 tgacccatggtgggaaagttttataccttccc 18246192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 1e-27; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 147 - 258
Target Start/End: Original strand, 39087407 - 39087518
Alignment:
Q  147 gatgagaaaagtttggaaagtgaagctattgagatcagatgtgggagaacatgataagctttaatagaaatgcacaatctaaccatttatcttgtgtgac 246  Q
    |||||||||||||||||||| ||||| ||| |||| || ||||||||||||||||||| ||| ||||||||||| ||||||||||||||| || |||||     
T  39087407 gatgagaaaagtttggaaagagaagcaattaagattaggtgtgggagaacatgataaggttttatagaaatgcaaaatctaaccatttattttatgtgat 39087506  T
Q  247 ccatggtgggaa 258  Q
    | ||||||||||    
T  39087507 ctatggtgggaa 39087518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 444 - 537
Target Start/End: Original strand, 42551473 - 42551575
Alignment:
Q  444 acagaaatgagctcttatgtcattgaag--------gaaatcataaaaggtaacaacactatcgactcatttcactttaacttcccatgt-ctcgagtat 534  Q
    ||||||||||||||||||||||||||||        || ||||||||||||||||||||||  ||||||||||||||||| ||||||||| |||||||||    
T  42551473 acagaaatgagctcttatgtcattgaagtgtcccaggagatcataaaaggtaacaacactacggactcatttcactttaatttcccatgtcctcgagtat 42551572  T
Q  535 tat 537  Q
    |||    
T  42551573 tat 42551575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 370 - 446
Target Start/End: Original strand, 41687598 - 41687674
Alignment:
Q  370 aacctgggttgggttcaagtgaccataggaacatggaagacatgagcatccaggaactggtttctgtgttgcgcaca 446  Q
    ||||||||||| |||| ||||||||||| ||  |||||||||||||||| || ||||||||||||||||| ||||||    
T  41687598 aacctgggttgagttcgagtgaccatagaaatttggaagacatgagcattcatgaactggtttctgtgttacgcaca 41687674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 370 - 447
Target Start/End: Complemental strand, 41659739 - 41659662
Alignment:
Q  370 aacctgggttgggttcaagtgaccataggaacatggaagacatgagcatccaggaactggtttctgtgttgcgcacag 447  Q
    ||||||||||| |||||| ||||||||| ||| |||||||||||||||| |||||||| ||||| |||| ||| ||||    
T  41659739 aacctgggttgtgttcaaatgaccatagaaacttggaagacatgagcattcaggaacttgtttcggtgtcgcgtacag 41659662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 444 - 534
Target Start/End: Original strand, 11105 - 11203
Alignment:
Q  444 acagaaatgagctcttatgtcattgaa--------ggaaatcataaaaggtaacaacactatcgactcatttcactttaacttcccatgtctcgagtat 534  Q
    |||||||||||||||||||||||||||        ||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  11105 acagaaatgagctcttatgtcattgaaaggtccaaggagatcataaaaggtaacaacactaccaactcatttcactttaacttcccatgtctcgagtat 11203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 444 - 531
Target Start/End: Complemental strand, 12073 - 11978
Alignment:
Q  444 acagaaatgagctcttatgtcattgaa--------ggaaatcataaaaggtaacaacactatcgactcatttcactttaacttcccatgtctcgag 531  Q
    |||||||||||||||||||||||||||        ||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  12073 acagaaatgagctcttatgtcattgaaaggtcctaggagatcataaaaggtaacaacactaccaactcatttcactttaacttcccatgtctcgag 11978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 147 - 251
Target Start/End: Original strand, 20040174 - 20040276
Alignment:
Q  147 gatgagaaaagtttggaaagtgaagctattgagatcagatgtgggagaacatgataagctttaatagaaatgcacaatctaaccatttatcttgtgtgac 246  Q
    ||||||||||||||||| ||  |||| ||| |||| || ||||||||||||||||||| |||||||||| ||||||||||||||||||||| | |||||     
T  20040174 gatgagaaaagtttggagag--aagccattaagattaggtgtgggagaacatgataagatttaatagaagtgcacaatctaaccatttatcctatgtgat 20040271  T
Q  247 ccatg 251  Q
    |||||    
T  20040272 ccatg 20040276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 444 - 537
Target Start/End: Complemental strand, 157300 - 157199
Alignment:
Q  444 acagaaatgagctcttatgtcattgaa--------ggaaatcataaaaggtaacaacactatcgactcatttcactttaacttcccatgtctcgagtatt 535  Q
    |||||||||||||||||||||||||||        ||| || ||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||    
T  157300 acagaaatgagctcttatgtcattgaaaggtcccaggagattataaaaggtaacaacactgccaactcatttcactttaacttcccatgtctcgagtatt 157201  T
Q  536 at 537  Q
    ||    
T  157200 at 157199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University