View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2811_1D_low_40 (Length: 221)
Name: NF2811_1D_low_40
Description: NF2811_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2811_1D_low_40 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 24 - 221
Target Start/End: Complemental strand, 39820056 - 39819859
Alignment:
| Q |
24 |
cctttactcgttttcttgccaccaaagcttatccaaatccaaaaactaaattcataatcgtttattcgtttcaatttgttcatattattagtcttctgac |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
39820056 |
cctttactcgttttcttgccaccaaagcttatccaaatccaaaaactaaattcataatcgtttattcatttcaatttgttcatattattagtcttctgac |
39819957 |
T |
|
| Q |
124 |
tgtgacattatcaaatagtagtaaggttacagttgtaatggctgcaaatttatatagggtggtccagaaggataggagcttcggtcccaaaccctttt |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
39819956 |
tgtgacattatcaaatagtagtaaggttacagttgtaatggctgcaaatttatatagggtggtccagaaggataggagctttggtcccaaaccctttt |
39819859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University