View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2811_1D_low_43 (Length: 212)
Name: NF2811_1D_low_43
Description: NF2811_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2811_1D_low_43 |
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Alignment Details
Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 122 - 206
Target Start/End: Complemental strand, 20770449 - 20770365
Alignment:
| Q |
122 |
caaacagatcaatccattgcacgaaccaacaatcccacagcagtaacgggcatggaatcggctgtaatgatttccagtatgtgtg |
206 |
Q |
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| T |
20770449 |
caaatagatcaatccattgcacgaaccaacaatcccacaacagtaacgggcatggaatcggctgtaatgatttccagtacgtgtg |
20770365 |
T |
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Target: chr6; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 20770491 - 20770444
Alignment:
| Q |
2 |
agattatactgaggacaattataacgatgacagaccaaccaacaaata |
49 |
Q |
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| T |
20770491 |
agattattctgaggacaattataacgatgacagaccaaccaacaaata |
20770444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 154
Target Start/End: Complemental strand, 29873938 - 29873906
Alignment:
| Q |
122 |
caaacagatcaatccattgcacgaaccaacaat |
154 |
Q |
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| T |
29873938 |
caaacagatcaatccattgcaggaaccaacaat |
29873906 |
T |
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