View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2811_1D_low_44 (Length: 210)

Name: NF2811_1D_low_44
Description: NF2811_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2811_1D_low_44
NF2811_1D_low_44
[»] chr7 (2 HSPs)
chr7 (37-210)||(41688782-41688945)
chr7 (71-199)||(41681512-41681643)
[»] chr4 (4 HSPs)
chr4 (38-114)||(44668640-44668716)
chr4 (38-114)||(44687916-44687992)
chr4 (35-111)||(45088954-45089030)
chr4 (38-89)||(45095418-45095469)
[»] chr1 (10 HSPs)
chr1 (29-93)||(43983344-43983408)
chr1 (35-111)||(44004751-44004827)
chr1 (35-88)||(43986159-43986212)
chr1 (32-106)||(43908406-43908480)
chr1 (36-94)||(42414880-42414938)
chr1 (35-89)||(43917832-43917886)
chr1 (37-103)||(43990943-43991009)
chr1 (36-87)||(23682390-23682441)
chr1 (29-87)||(19567318-19567376)
chr1 (40-89)||(43993626-43993675)
[»] chr2 (6 HSPs)
chr2 (35-110)||(24002338-24002413)
chr2 (36-111)||(20596094-20596169)
chr2 (29-114)||(20575447-20575532)
chr2 (36-93)||(20585241-20585298)
chr2 (36-93)||(20603568-20603625)
chr2 (36-93)||(20895404-20895461)
[»] chr8 (3 HSPs)
chr8 (37-111)||(42694391-42694465)
chr8 (29-89)||(42700091-42700151)
chr8 (35-107)||(24041718-24041790)


Alignment Details
Target: chr7 (Bit Score: 112; Significance: 8e-57; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 37 - 210
Target Start/End: Original strand, 41688782 - 41688945
Alignment:
Q  37 agggatgatcatcaatttagtccatgactcaacaactctatactctttcatcaaccatgcaacccaatgagttttgttnnnnnnncacacacaaagacaa 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||       
T  41688782 agggatgatcatcaatttagtccatgactcaacaactctatactctttcatcaaccatgcaacccaatgagttttgttaaaaaa--acacacaaaga--- 41688876  T
Q  137 ttactcaaaacatacagcatatctttgcacatgtagtcaccatcactttgaggcagcaacactaacacctcttt 210  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  41688877 -----caaaacatacagcatatctttgcacatgtagtcaccatcactttgaggcagcaacagtaacacctcttt 41688945  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 199
Target Start/End: Original strand, 41681512 - 41681643
Alignment:
Q  71 actctatactctttcatcaaccatgcaacccaatgagttttgttnnnnnnncacacacaaagacaattactcaaaacataca---gcatatctttgcaca 167  Q
    |||| ||||||||||||||||||  ||||||||||||| |||||       ||||||||||| | || ||||||||||| ||    |||||||||| | |    
T  41681512 actccatactctttcatcaaccacacaacccaatgagtcttgttcaaaaaacacacacaaaggcgatcactcaaaacatgcatattcatatctttgtata 41681611  T
Q  168 tgtagtcaccatcactttgaggcagcaacact 199  Q
     | ||||||| ||||||||||||| |||||||    
T  41681612 cgaagtcaccgtcactttgaggcaacaacact 41681643  T

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Target: chr4 (Bit Score: 57; Significance: 5e-24; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 38 - 114
Target Start/End: Original strand, 44668640 - 44668716
Alignment:
Q  38 gggatgatcatcaatttagtccatgactcaacaactctatactctttcatcaaccatgcaacccaatgagttttgtt 114  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||  |||||||||||||||||||    
T  44668640 gggatgatcatcagtttagtccatgactcaacaactccatactctttcatcatccacacaacccaatgagttttgtt 44668716  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 38 - 114
Target Start/End: Original strand, 44687916 - 44687992
Alignment:
Q  38 gggatgatcatcaatttagtccatgactcaacaactctatactctttcatcaaccatgcaacccaatgagttttgtt 114  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||  |||||||||||||||||||    
T  44687916 gggatgatcatcagtttagtccatgactcaacaactccatactctttcatcatccacacaacccaatgagttttgtt 44687992  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 35 - 111
Target Start/End: Original strand, 45088954 - 45089030
Alignment:
Q  35 tgagggatgatcatcaatttagtccatgactcaacaactctatactctttcatcaaccatgcaacccaatgagtttt 111  Q
    ||||||||||| |||||||||| ||| ||||||| ||||| |||||||||||||| |||  ||||||||||||||||    
T  45088954 tgagggatgattatcaatttagcccacgactcaataactccatactctttcatcatccacacaacccaatgagtttt 45089030  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 38 - 89
Target Start/End: Original strand, 45095418 - 45095469
Alignment:
Q  38 gggatgatcatcaatttagtccatgactcaacaactctatactctttcatca 89  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  45095418 gggatgatcatcattttagtccatgactcaacaactccatactctttcatca 45095469  T

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Target: chr1 (Bit Score: 53; Significance: 1e-21; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 43983344 - 43983408
Alignment:
Q  29 ttctcgtgagggatgatcatcaatttagtccatgactcaacaactctatactctttcatcaacca 93  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  43983344 ttctcatgagggatgatcatgaatttagtccatgactcaacaactccatactctttcatcaacca 43983408  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 35 - 111
Target Start/End: Original strand, 44004751 - 44004827
Alignment:
Q  35 tgagggatgatcatcaatttagtccatgactcaacaactctatactctttcatcaaccatgcaacccaatgagtttt 111  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||  ||  ||||||||||||    
T  44004751 tgagggatgatcatcaatttagtccatgactcagcaactccatactctttcatcatccacacagtccaatgagtttt 44004827  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 43986159 - 43986212
Alignment:
Q  35 tgagggatgatcatcaatttagtccatgactcaacaactctatactctttcatc 88  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  43986159 tgagggataatcatcaatttagtccatgactcaacaactccatactctttcatc 43986212  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 32 - 106
Target Start/End: Complemental strand, 43908480 - 43908406
Alignment:
Q  32 tcgtgagggatgatcatcaatttagtccatgactcaacaactctatactctttcatcaaccatgcaacccaatga 106  Q
    |||||||||||||| | ||||||||||||||||| | |||||| |||||||||||||| |||| ||| |||||||    
T  43908480 tcgtgagggatgataaacaatttagtccatgacttagcaactccatactctttcatcatccatacaatccaatga 43908406  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 94
Target Start/End: Complemental strand, 42414938 - 42414880
Alignment:
Q  36 gagggatgatcatcaatttagtccatgactcaacaactctatactctttcatcaaccat 94  Q
    ||||||||||||||||||||||||| ||||||  ||||| ||||| |||||||||||||    
T  42414938 gagggatgatcatcaatttagtccaagactcagtaactccatactgtttcatcaaccat 42414880  T

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Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 35 - 89
Target Start/End: Complemental strand, 43917886 - 43917832
Alignment:
Q  35 tgagggatgatcatcaatttagtccatgactcaacaactctatactctttcatca 89  Q
    |||||||||||||| ||||||||||||||||||| ||||| | ||||||||||||    
T  43917886 tgagggatgatcatgaatttagtccatgactcaaaaactccacactctttcatca 43917832  T

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Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 37 - 103
Target Start/End: Original strand, 43990943 - 43991009
Alignment:
Q  37 agggatgatcatcaatttagtccatgactcaacaactctatactctttcatcaaccatgcaacccaa 103  Q
    |||||||||||||||||||||||||||||||| ||  | |||||||||||||| |||  ||||||||    
T  43990943 agggatgatcatcaatttagtccatgactcaataatgccatactctttcatcatccacacaacccaa 43991009  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 23682441 - 23682390
Alignment:
Q  36 gagggatgatcatcaatttagtccatgactcaacaactctatactctttcat 87  Q
    ||||||||||| |||||  ||||||||||||| |||||| ||||||||||||    
T  23682441 gagggatgatcgtcaatacagtccatgactcagcaactccatactctttcat 23682390  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 87
Target Start/End: Original strand, 19567318 - 19567376
Alignment:
Q  29 ttctcgtgagggatgatcatcaatttagtccatgactcaacaactctatactctttcat 87  Q
    ||||| |||| ||||||  ||||| |||||||||||||| |||||| ||||||||||||    
T  19567318 ttctcatgagagatgattgtcaatatagtccatgactcagcaactccatactctttcat 19567376  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 89
Target Start/End: Original strand, 43993626 - 43993675
Alignment:
Q  40 gatgatcatcaatttagtccatgactcaacaactctatactctttcatca 89  Q
    |||||| || ||||||||||||||||||| ||||| ||||| ||||||||    
T  43993626 gatgattatgaatttagtccatgactcaaaaactccatactatttcatca 43993675  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 35 - 110
Target Start/End: Complemental strand, 24002413 - 24002338
Alignment:
Q  35 tgagggatgatcatcaatttagtccatgactcaacaactctatactctttcatcaaccatgcaacccaatgagttt 110  Q
    |||||||||||  ||||||| |||||||||||||||||||  |||| |||||||| |||  |||||||||||||||    
T  24002413 tgagggatgattttcaattttgtccatgactcaacaactccgtactttttcatcatccacacaacccaatgagttt 24002338  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 111
Target Start/End: Original strand, 20596094 - 20596169
Alignment:
Q  36 gagggatgatcatcaatttagtccatgactcaacaactctatactctttcatcaaccatgcaacccaatgagtttt 111  Q
    ||||||| ||||||||| |||||||||||||| |||||| ||| | |||||| |||||   | |||||||||||||    
T  20596094 gagggatcatcatcaatctagtccatgactcagcaactccatattttttcattaaccaaaaatcccaatgagtttt 20596169  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 114
Target Start/End: Original strand, 20575447 - 20575532
Alignment:
Q  29 ttctcgtgagggatgatcatcaatttagtccatgactcaacaactctatactctttcatcaaccatgcaacccaatgagttttgtt 114  Q
    ||||| |||||||| ||||||||  ||||||| || ||| ||| || |||   |||||||||||||| |||| |||||||||||||    
T  20575447 ttctcatgagggatcatcatcaacctagtccaagattcagcaattccatatattttcatcaaccatgaaaccaaatgagttttgtt 20575532  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 20585241 - 20585298
Alignment:
Q  36 gagggatgatcatcaatttagtccatgactcaacaactctatactctttcatcaacca 93  Q
    ||||||| ||||||||| |||||||||||||| |||||| ||| | |||||| |||||    
T  20585241 gagggatcatcatcaatctagtccatgactcagcaactccatattttttcattaacca 20585298  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 20603568 - 20603625
Alignment:
Q  36 gagggatgatcatcaatttagtccatgactcaacaactctatactctttcatcaacca 93  Q
    ||||||| ||||||||| |||||||||||||| |||||| ||| | |||||| |||||    
T  20603568 gagggatcatcatcaatctagtccatgactcagcaactccatattttttcattaacca 20603625  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 36 - 93
Target Start/End: Complemental strand, 20895461 - 20895404
Alignment:
Q  36 gagggatgatcatcaatttagtccatgactcaacaactctatactctttcatcaacca 93  Q
    ||||||| ||||||||| |||||||||||||| |||||| ||| | |||||| |||||    
T  20895461 gagggatcatcatcaatctagtccatgactcagcaactccatattttttcattaacca 20895404  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 37 - 111
Target Start/End: Complemental strand, 42694465 - 42694391
Alignment:
Q  37 agggatgatcatcaatttagtccatgactcaacaactctatactctttcatcaaccatgcaacccaatgagtttt 111  Q
    |||||||||||||||||||||||||||||||  ||||| ||| |  ||||||| |||| || |||||||| ||||    
T  42694465 agggatgatcatcaatttagtccatgactcagtaactccatattgattcatcatccatacaccccaatgattttt 42694391  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 89
Target Start/End: Complemental strand, 42700151 - 42700091
Alignment:
Q  29 ttctcgtgagggatgatcatcaatttagtccatgactcaacaactctatactctttcatca 89  Q
    ||||| ||||| |||| |||||||||||||||||||||| |||||| ||| | ||||||||    
T  42700151 ttctcatgaggaatgaacatcaatttagtccatgactcagcaactccatattgtttcatca 42700091  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 107
Target Start/End: Original strand, 24041718 - 24041790
Alignment:
Q  35 tgagggatgatcatcaatttagtccatgactcaacaactctatactctttcatcaaccatgcaacccaatgag 107  Q
    |||||||||||  ||| ||| ||||||||||||||||| || | || |||||||| |||  ||||||||||||    
T  24041718 tgagggatgattttcagttttgtccatgactcaacaacgctgttctttttcatcatccacacaacccaatgag 24041790  T

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