View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2811_1D_low_5 (Length: 543)
Name: NF2811_1D_low_5
Description: NF2811_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2811_1D_low_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 19 - 460
Target Start/End: Original strand, 13037221 - 13037662
Alignment:
| Q |
19 |
catcagaacaaaaatgtaaatgatggtagtggcattgaggatgaacaggctgataaaaccgagtcgggaaaaacagtagcggacggcaaccggtttgacc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
13037221 |
catcagaacaaaaatgtaaatgatggtagtggcattgaggatgaacaggctgataaaaccgagtcgggaaaaacagtaacggacggcaaccggtttgacc |
13037320 |
T |
|
| Q |
119 |
aagtatcgttgaaagatcaagagaagaacaatgtgaatgtggagtcaatccactctcttggttcagataatgtacaggactccgttggtggaaatgaaga |
218 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13037321 |
aagtattgttgaaagatcaagagaagaacaatgtgaatgtggagtcaatccactctcttggttcagataatgtacaggactccgttggtggaaatgaaga |
13037420 |
T |
|
| Q |
219 |
ggaatttcaaatttcatctgggatgtactcgccagagagtaatacttcgccagttcccgcaatgcaacatgatcatatttcatacagccctgggtcaggg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13037421 |
ggaatttcaaatttcatctgggatgtactcgccagagagtaatacttcgccagttcccgcaatgcaacatgatcatatttcatacagccctgggtcaggg |
13037520 |
T |
|
| Q |
319 |
ggacattttggtgttggttttggttcaactggttattctccacaaacacctaagcnnnnnnntgctatgccaaatacgtcagcggaattgctgcatttag |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13037521 |
ggacattttggtgttggttttggttcaactggttattctccacaaacacctaagcaaaaaaatgctatgccaaatacgtcagcggaattgctgcatttag |
13037620 |
T |
|
| Q |
419 |
ttgattctgcaatcatggggaaacccgaaggtatggagaaac |
460 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13037621 |
ttgattctgcaatcatggggaaacccgaaggtatggagaaac |
13037662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 452
Target Start/End: Complemental strand, 28378965 - 28378916
Alignment:
| Q |
403 |
gaattgctgcatttagttgattctgcaatcatggggaaacccgaaggtat |
452 |
Q |
| |
|
||||| |||||| ||||||||||||| || ||||||||||| |||||||| |
|
|
| T |
28378965 |
gaattactgcatctagttgattctgccattatggggaaacctgaaggtat |
28378916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University