View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2811_1D_low_50 (Length: 205)

Name: NF2811_1D_low_50
Description: NF2811_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2811_1D_low_50
NF2811_1D_low_50
[»] chr1 (4 HSPs)
chr1 (20-205)||(22055617-22055802)
chr1 (46-203)||(29372957-29373112)
chr1 (82-203)||(22056694-22056815)
chr1 (79-203)||(29371712-29371839)
[»] chr7 (1 HSPs)
chr7 (80-205)||(22622527-22622652)
[»] chr4 (5 HSPs)
chr4 (80-203)||(28786832-28786954)
chr4 (135-203)||(24856122-24856190)
chr4 (135-192)||(24853222-24853279)
chr4 (135-203)||(51246498-51246566)
chr4 (135-203)||(17525645-17525713)
[»] chr3 (8 HSPs)
chr3 (82-167)||(2932826-2932912)
chr3 (86-177)||(1888660-1888751)
chr3 (80-203)||(1896721-1896843)
chr3 (80-203)||(1906167-1906289)
chr3 (139-203)||(12737445-12737509)
chr3 (139-203)||(12738071-12738135)
chr3 (135-203)||(12739218-12739286)
chr3 (135-194)||(15022936-15022994)
[»] chr5 (4 HSPs)
chr5 (82-205)||(5663901-5664022)
chr5 (135-203)||(5047095-5047163)
chr5 (135-203)||(5047866-5047934)
chr5 (135-203)||(5046324-5046392)
[»] chr8 (1 HSPs)
chr8 (23-203)||(1275352-1275529)
[»] scaffold0406 (1 HSPs)
scaffold0406 (135-203)||(6156-6224)
[»] scaffold0464 (1 HSPs)
scaffold0464 (139-203)||(4611-4675)


Alignment Details
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 20 - 205
Target Start/End: Complemental strand, 22055802 - 22055617
Alignment:
Q  20 atcatgtttgagctactatgtactagatttggagttttcgaaacatacattaaataggggtgttgaaattgatacatatctctaaaataatatagttaaa 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||    
T  22055802 atcatgtttgagctactatgtactagatttggagttttcgaaacatacattaaggaggagtgttgaaattgatacatatctctaaaataatatagttaaa 22055703  T
Q  120 aatatgacaatgtctattagagaaaactataatagcttaaagttgctaaatgtttctagattgttcaattaatgtctagattaaat 205  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  22055702 aatatgacaatgtctattagagaaaactataatagcttaaatttgctaaatgtttctagattgttcaattaatgtctagattaaat 22055617  T

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Target: chr1; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 46 - 203
Target Start/End: Original strand, 29372957 - 29373112
Alignment:
Q  46 atttggagttttcgaaacatacattaaataggggtgttgaaattgatacatatctctaaaataatatagttaaaaatatgacaatgtctattagagaaaa 145  Q
    ||||||||||||||| | || ||||||  ||| | ||||||  |||||||| | |||| |||||| ||||||||||||||||||||||||||||||||      
T  29372957 atttggagttttcgacatatgcattaaggaggagagttgaa--tgatacatgtttctagaataatttagttaaaaatatgacaatgtctattagagaatt 29373054  T
Q  146 ctataatagcttaaagttgctaaatgtttctagattgttcaattaatgtctagattaa 203  Q
     || ||||| |||||||||||| ||||||||||||||||| | |||| ||||||||||    
T  29373055 atagaatagtttaaagttgctacatgtttctagattgttctactaatatctagattaa 29373112  T

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Target: chr1; HSP #3
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 82 - 203
Target Start/End: Complemental strand, 22056815 - 22056694
Alignment:
Q  82 ttgaaattgatacatatctctaaaataatatagttaaaaatatgacaatgtctattagagaaaactataatagc-ttaaagttgctaaatgtttctagat 180  Q
    ||||||||||||||||| || ||| |||| ||||||||| |||| || |||||||||||||||||||||||||| |||||||| ||  || |||||||||    
T  22056815 ttgaaattgatacatatttccaaagtaatctagttaaaa-tatgccagtgtctattagagaaaactataatagctttaaagttacttcatatttctagat 22056717  T
Q  181 tgttcaattaatgtctagattaa 203  Q
    |||||  ||||||||||||||||    
T  22056716 tgttctgttaatgtctagattaa 22056694  T

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Target: chr1; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 79 - 203
Target Start/End: Original strand, 29371712 - 29371839
Alignment:
Q  79 gtgttgaaattgatacatatctctaaaataatatagttaaaaatatgacaatgtctattagagaa----aactataatagcttaaagttgctaaatgttt 174  Q
    |||||||||| ||||||||| ||||||||| | ||||||||||||||||||| ||||||||||||    || ||||||||||||| |||| || ||||||    
T  29371712 gtgttgaaatcgatacatatttctaaaatatt-tagttaaaaatatgacaatttctattagagaatactaagtataatagcttaatgttgttacatgttt 29371810  T
Q  175 ctagattgttcaattaatgtctagattaa 203  Q
     |  ||||||| |||||||||||||||||    
T  29371811 tttaattgttctattaatgtctagattaa 29371839  T

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Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 80 - 205
Target Start/End: Complemental strand, 22622652 - 22622527
Alignment:
Q  80 tgttgaaattgatacatatctctaaaataatatagttaaaaatatgacaatgtctattagagaaaactataatagcttaaagttgctaaatgtttctaga 179  Q
    ||||||||||||||||||| |||| |||| | |||||||||  |||| ||||||||||||| |||||||||||||||||||||||| | |||||||||||    
T  22622652 tgttgaaattgatacatatttctagaatattctagttaaaataatgataatgtctattagaaaaaactataatagcttaaagttgccacatgtttctaga 22622553  T
Q  180 ttgttcaattaatgtctagattaaat 205  Q
    |||||| |||||| ||||||||||||    
T  22622552 ttgttctattaatatctagattaaat 22622527  T

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Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 80 - 203
Target Start/End: Original strand, 28786832 - 28786954
Alignment:
Q  80 tgttgaaattgatacatatctctaaaataatatagttaaaaatatgacaatgtctattagagaaaactataatagcttaaagttgctaaatgtttctaga 179  Q
    |||||||||||||| |||| ||||||||| | ||||||||   |||||||| | ||||||||||||||| |||| ||||||||||||| ||||||||| |    
T  28786832 tgttgaaattgatatatatttctaaaatattctagttaaattaatgacaattt-tattagagaaaactagaataacttaaagttgctacatgtttctaaa 28786930  T
Q  180 ttgttcaattaatgtctagattaa 203  Q
    |||||  |||||||||| ||||||    
T  28786931 ttgttatattaatgtctcgattaa 28786954  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 135 - 203
Target Start/End: Original strand, 24856122 - 24856190
Alignment:
Q  135 attagagaaaactataatagcttaaagttgctaaatgtttctagattgttcaattaatgtctagattaa 203  Q
    |||||||||| ||| |||| ||||||||||||| ||||||||||||||||| |||||||||||| ||||    
T  24856122 attagagaaatctagaataacttaaagttgctacatgtttctagattgttctattaatgtctagtttaa 24856190  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 192
Target Start/End: Original strand, 24853222 - 24853279
Alignment:
Q  135 attagagaaaactataatagcttaaagttgctaaatgtttctagattgttcaattaat 192  Q
    |||||||||||||| |||| | ||||||| ||||||||||||||||||||| ||||||    
T  24853222 attagagaaaactagaataacataaagtttctaaatgtttctagattgttctattaat 24853279  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 203
Target Start/End: Original strand, 51246498 - 51246566
Alignment:
Q  135 attagagaaaactataatagcttaaagttgctaaatgtttctagattgttcaattaatgtctagattaa 203  Q
    |||||||||||||| ||||    |||||||||| |||||||||||||| || |||||||||||| ||||    
T  51246498 attagagaaaactagaataatacaaagttgctagatgtttctagattgctctattaatgtctaggttaa 51246566  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 203
Target Start/End: Complemental strand, 17525713 - 17525645
Alignment:
Q  135 attagagaaaactataatagcttaaagttgctaaatgtttctagattgttcaattaatgtctagattaa 203  Q
    |||||||||| ||| | || | ||||||||||| |||||||| |||| ||| |||||||||||| ||||    
T  17525713 attagagaaagctagattaacataaagttgctacatgtttcttgattattctattaatgtctaggttaa 17525645  T

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Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 82 - 167
Target Start/End: Complemental strand, 2932912 - 2932826
Alignment:
Q  82 ttgaaattgatacatatctctaaaataatatagttaaaaata-tgacaatgtctattagagaaaactataatagcttaaagttgcta 167  Q
    ||||||||||||||||| |||| |||| | |||||||||| | ||||||||||||||||| ||||||| ||||||||||||||||||    
T  2932912 ttgaaattgatacatatttctagaatattctagttaaaaaaaatgacaatgtctattagaaaaaactagaatagcttaaagttgcta 2932826  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 86 - 177
Target Start/End: Original strand, 1888660 - 1888751
Alignment:
Q  86 aattgatacatatctctaaaataatatagttaaaaatatgacaatgtctattagagaaaactataatagcttaaagttgctaaatgtttcta 177  Q
    ||||||| ||||| |||| |||| | |||||||||| |||||||||||||||||| ||||| | ||||||| |||||||||| |||||||||    
T  1888660 aattgatgcatatttctagaatattctagttaaaaaaatgacaatgtctattagaaaaaacaagaatagctaaaagttgctacatgtttcta 1888751  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 80 - 203
Target Start/End: Original strand, 1896721 - 1896843
Alignment:
Q  80 tgttgaaattgatacatatctctaaaataatatagttaaaaatatgacaatgtctattagagaaaactataatagcttaaagttgctaaatgtttctaga 179  Q
    ||||||||| |||| |||| |||| |||| | ||||| |||| |||||||||||||||||| ||||||| |||||||||||||||| | |||||| || |    
T  1896721 tgttgaaatagataaatatttctagaatattctagtttaaaaaatgacaatgtctattaga-aaaactagaatagcttaaagttgccacatgtttatata 1896819  T
Q  180 ttgttcaattaatgtctagattaa 203  Q
    |||||| ||| ||| |||| ||||    
T  1896820 ttgttctattgatgactaggttaa 1896843  T

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Target: chr3; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 80 - 203
Target Start/End: Original strand, 1906167 - 1906289
Alignment:
Q  80 tgttgaaattgatacatatctctaaaataatatagttaaaaatatgacaatgtctattagagaaaactataatagcttaaagttgctaaatgtttctaga 179  Q
    ||||||||| |||| |||| |||| |||| | ||||| |||| |||||||||||||||||| ||||||| |||||||||||||||| | |||||| || |    
T  1906167 tgttgaaatagataaatatttctagaatattctagtttaaaaaatgacaatgtctattaga-aaaactagaatagcttaaagttgccacatgtttatata 1906265  T
Q  180 ttgttcaattaatgtctagattaa 203  Q
    |||||| ||| ||| |||| ||||    
T  1906266 ttgttctattgatgactaggttaa 1906289  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 203
Target Start/End: Original strand, 12737445 - 12737509
Alignment:
Q  139 gagaaaactataatagcttaaagttgctaaatgtttctagattgttcaattaatgtctagattaa 203  Q
    |||||||||| |||| | ||||||||||| |||||| |||||||||| |||||||||||||||||    
T  12737445 gagaaaactaaaataacataaagttgctacatgtttgtagattgttctattaatgtctagattaa 12737509  T

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Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 203
Target Start/End: Original strand, 12738071 - 12738135
Alignment:
Q  139 gagaaaactataatagcttaaagttgctaaatgtttctagattgttcaattaatgtctagattaa 203  Q
    |||||||||| |||| | ||||||||||| |||||| |||||||||| |||||||||||||||||    
T  12738071 gagaaaactaaaataacataaagttgctacatgtttgtagattgttctattaatgtctagattaa 12738135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 135 - 203
Target Start/End: Original strand, 12739218 - 12739286
Alignment:
Q  135 attagagaaaactataatagcttaaagttgctaaatgtttctagattgttcaattaatgtctagattaa 203  Q
    ||||||||||| || |||| | ||||||||||| ||||||||||||||||| |||||| ||||| ||||    
T  12739218 attagagaaaattagaataacataaagttgctacatgtttctagattgttctattaatatctaggttaa 12739286  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 194
Target Start/End: Original strand, 15022936 - 15022994
Alignment:
Q  135 attagagaaaactataatagcttaaagttgctaaatgtttctagattgttcaattaatgt 194  Q
    |||||||||||||| |||| | |||||| |||| ||||||||||||||||| ||||||||    
T  15022936 attagagaaaactagaataacataaagt-gctatatgtttctagattgttctattaatgt 15022994  T

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Target: chr5 (Bit Score: 49; Significance: 3e-19; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 82 - 205
Target Start/End: Complemental strand, 5664022 - 5663901
Alignment:
Q  82 ttgaaattgatacatatctctaaaataatatagttaaaaatatgacaatgtct-attagagaaaactataatagcttaaagttgctaaatgtttctagat 180  Q
    ||||||||||||||||| | || |||| | |||||||||| |||||||||||| || ||||||| ||| | |||||||||||||||| |||||| |||||    
T  5664022 ttgaaattgatacatatttttagaatattctagttaaaaa-atgacaatgtctgatcagagaaa-ctagagtagcttaaagttgctacatgttt-tagat 5663926  T
Q  181 tgttcaattaatgtctagattaaat 205  Q
    ||||| ||||||||||| |||||||    
T  5663925 tgttctattaatgtctaaattaaat 5663901  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 135 - 203
Target Start/End: Original strand, 5047095 - 5047163
Alignment:
Q  135 attagagaaaactataatagcttaaagttgctaaatgtttctagattgttcaattaatgtctagattaa 203  Q
    |||||||||||||| |||| | ||||||||||| ||||||| ||||||||| |||||||||||| ||||    
T  5047095 attagagaaaactagaataacataaagttgctacatgtttcgagattgttctattaatgtctaggttaa 5047163  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 135 - 203
Target Start/End: Original strand, 5047866 - 5047934
Alignment:
Q  135 attagagaaaactataatagcttaaagttgctaaatgtttctagattgttcaattaatgtctagattaa 203  Q
    |||||||||||||| |||| | ||||||||||| ||||||| ||||||||| |||||||||||| ||||    
T  5047866 attagagaaaactagaataacataaagttgctacatgtttcgagattgttctattaatgtctaggttaa 5047934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 203
Target Start/End: Original strand, 5046324 - 5046392
Alignment:
Q  135 attagagaaaactataatagcttaaagttgctaaatgtttctagattgttcaattaatgtctagattaa 203  Q
    |||||||||||||| |||| | ||||||||||  |||||| |||||||||  |||||||||||| ||||    
T  5046324 attagagaaaactagaataacataaagttgcttcatgtttatagattgttttattaatgtctaggttaa 5046392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 23 - 203
Target Start/End: Complemental strand, 1275529 - 1275352
Alignment:
Q  23 atgtttgagctactatgtactagatttggagttttcgaaacatacattaaataggggtgttgaaattgatacatatctctaaaataatatagttaaaaat 122  Q
    |||||||||| |||| | | || |||||||||||  |||| || ||| ||  ||| |||||||||||||||||||| |||| |||  | |||||||   |    
T  1275529 atgtttgagcaactacgcattacatttggagtttctgaaatatgcatcaaggaggagtgttgaaattgatacatatttctagaattttctagttaa---t 1275433  T
Q  123 atgacaatgtctattagagaaaactataatagcttaaagttgctaaatgtttctagattgttcaattaatgtctagattaa 203  Q
    || || | |||||||||||||||||| |||| || |||||||||| ||||||||||||| ||  |||||||| || |||||    
T  1275432 ataacgacgtctattagagaaaactagaataactcaaagttgctacatgtttctagattattttattaatgtataaattaa 1275352  T

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Target: scaffold0406 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 135 - 203
Target Start/End: Original strand, 6156 - 6224
Alignment:
Q  135 attagagaaaactataatagcttaaagttgctaaatgtttctagattgttcaattaatgtctagattaa 203  Q
    |||||||||||||| |||| | ||||||||||| ||||||| ||||||||| |||||||||||| ||||    
T  6156 attagagaaaactagaataacataaagttgctacatgtttcgagattgttctattaatgtctaggttaa 6224  T

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Target: scaffold0464 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 203
Target Start/End: Complemental strand, 4675 - 4611
Alignment:
Q  139 gagaaaactataatagcttaaagttgctaaatgtttctagattgttcaattaatgtctagattaa 203  Q
    |||||||||| |||| | ||||||| ||| ||||||||||||||||   ||||||||||| ||||    
T  4675 gagaaaactaaaataacataaagttactacatgtttctagattgttttgttaatgtctaggttaa 4611  T

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