View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2811_1D_low_51 (Length: 203)
Name: NF2811_1D_low_51
Description: NF2811_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2811_1D_low_51 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 2 - 197
Target Start/End: Complemental strand, 47705510 - 47705315
Alignment:
| Q |
2 |
ctgatatgaacctacaaggttacaagttgagctcaccaattccaagcaaagacccaaataatcgttctatacttgctttctttgctggaggggaacatgg |
101 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47705510 |
ctgaaatgaacctacaaggttacaagttgagctcaccaattccaagcaaagaatcaaataatcgttctatacttgctttctttgctggaggggaacatgg |
47705411 |
T |
|
| Q |
102 |
tatgattagaaagacattactagatcaatggaaaggaaaagataaagaagtactagtgtatgaatatcttccnnnnnnncttaagtactttaaact |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
47705410 |
tatgattagaaagacattactagatcaatggaaaggaaaagataaagaagtactagtgtatgaatatcttccaaaaaaacttaagtactttaaact |
47705315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University