View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2811_1D_low_9 (Length: 386)
Name: NF2811_1D_low_9
Description: NF2811_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2811_1D_low_9 |
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| [»] chr1 (3 HSPs) |
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| [»] scaffold0244 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 24 - 386
Target Start/End: Original strand, 22055012 - 22055366
Alignment:
| Q |
24 |
agttttagctggatgtccaatgttggagaatctacgagtgtctgatatatatttccatgaggaggaagaagattctcttaccattcaagaggttaaaagc |
123 |
Q |
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| T |
22055012 |
agttttagctggatgtccaatgttggagaatctacgagtgtctgatatatatttccatgaggaggaagaagattctcttaccattcaagaggttaaaagc |
22055111 |
T |
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| Q |
124 |
ttcagcttccctaaattgactagagcaaaagtcactcgtttttggtcttcgtattttccgatgaaagcactctctaaatcagagtacttgtgcatagatg |
223 |
Q |
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| T |
22055112 |
ttcagcttccctaaattgactagagcaaaagtcactcgtttttggtcttcgtattttccgatgaaagcactctctaaatcagagtatttgtgcatagatg |
22055211 |
T |
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| Q |
224 |
catactggtttgaagactttatttacgaggtattttttattatgaatatgatgcatgcttatctaacaccgacaattcatattaaatgtatgttgaaaat |
323 |
Q |
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| T |
22055212 |
catactggtttgaagactttatttacgaggtatgttttattatgaatatgatgcatgcttatctaacaccgacacttcatattaaatgtatgttgaaaat |
22055311 |
T |
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| Q |
324 |
gtggcgatgtccaacatatttacatgttttgtccgtttccaacacgattggtaaaatatagtg |
386 |
Q |
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| T |
22055312 |
gtggcgatgtcca--------acatgttttgtcggtgtccaacacggttggtaaaatatagtg |
22055366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 26 - 233
Target Start/End: Original strand, 22075813 - 22076020
Alignment:
| Q |
26 |
ttttagctggatgtccaatgttggagaatctacgagtgtctgatatatatttccatgaggaggaagaagattctcttaccattcaagaggttaaaagctt |
125 |
Q |
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| T |
22075813 |
ttttagctggatgtccaattttggagtgtctacgagtgttcgatatatatttccctgaggaggacgaagattctcttaccattcaagaagttaaaagctt |
22075912 |
T |
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| Q |
126 |
cagcttccctaaattgactagagcaaaagtcactcgtttttggtcttcgtattttccgatgaaagcactctctaaatcagagtacttgtgcatagatgca |
225 |
Q |
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| T |
22075913 |
caacttacctaaattgactagagcaaatatcactcattttttgtgttcgtattttctgatgaaagcactctctgaatcagagtctttgtgcatagatgca |
22076012 |
T |
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| Q |
226 |
tactggtt |
233 |
Q |
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|||||||| |
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| T |
22076013 |
tactggtt |
22076020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 165 - 305
Target Start/End: Original strand, 22064436 - 22064582
Alignment:
| Q |
165 |
ttggtcttcgtattttccgatgaaagcactctctaaatcagagtacttgtgcatagatgcatactggt------ttgaagactttatttacgaggtattt |
258 |
Q |
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||||| |||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||| | ||||||||| |||||||||||| | |
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| T |
22064436 |
ttggtgttcgtattttccgatgaaagcactctctgaatccgagtctttgtgcatagatgcatactggttccacatagaagactttgtttacgaggtatgt |
22064535 |
T |
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| Q |
259 |
tttattatgaatatgatgcatgcttatctaacaccgacaattcatat |
305 |
Q |
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| T |
22064536 |
tttagcatgaatatgatgcatgattatgaaacactgacacttcatat |
22064582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0244 (Bit Score: 128; Significance: 4e-66; HSPs: 1)
Name: scaffold0244
Description:
Target: scaffold0244; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 26 - 277
Target Start/End: Complemental strand, 6704 - 6449
Alignment:
| Q |
26 |
ttttagctggatgtccaatgttggagaatctacgagtgtctgatatatatttccatgaggaggaagaagattctcttaccattcaagaggttaaaagctt |
125 |
Q |
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||||||||||||||||| | ||||||||||||||| | |||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
6704 |
ttttagctggatgtccatttttggagaatctacgactttctgatatatttttccctgaggaggaagaagattctgttaccattcaagaggttaaaagctt |
6605 |
T |
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| Q |
126 |
cagcttccctaaattgactagagcaaaagtcactcgtttttggtcttcgtattttccgatgaaagcactctctaaatcagagtacttgtgcatagatgca |
225 |
Q |
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| T |
6604 |
catcttacctaaattgactatagcaaatatca--cgtttttggtgttcatattttcagatgaaagcactctataaatcagagtgtttgtgcatagatgca |
6507 |
T |
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| Q |
226 |
tactggt------ttgaagactttatttacgaggtattttttattatgaatatgatgc |
277 |
Q |
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| T |
6506 |
cactggttcaacatagaatactttgtttacgaggtatgttttattattaatatgatgc |
6449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 150
Target Start/End: Original strand, 40640443 - 40640501
Alignment:
| Q |
92 |
aagattctcttaccattcaagaggttaaaagcttcagcttccctaaattgactagagca |
150 |
Q |
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| T |
40640443 |
aagattatcttaccattcaagagtataaaaacttaagctttcccaaattgactagagca |
40640501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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