View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2811_2D_high_1 (Length: 579)
Name: NF2811_2D_high_1
Description: NF2811_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2811_2D_high_1 |
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| [»] scaffold0262 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 7 - 560
Target Start/End: Original strand, 9526286 - 9526839
Alignment:
| Q |
7 |
ctgagatgaataaaccttggtcttctgcaaactcaactgcatcttcagtaggaaccattctcaagtcaacaaggtcacctttgttaccaactagcatgat |
106 |
Q |
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| T |
9526286 |
ctgagaagaataaaccttggtcttctgcaaactcaactgcatcttcagtagggaccattctcaaatcaacaaggtcacctttgttaccaactagcatgat |
9526385 |
T |
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| Q |
107 |
cacaattgagttatctgcatgtgctctaagttcctcaacccatttagcaacatgatcaaatgattgtcttttggttatgtcatatactagcatggctcct |
206 |
Q |
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| T |
9526386 |
cacaattgagttatctgcatgtgctctaagttcctcaacccatttagcaacatgatcaaaagattgccttttggttatgtcatatactagcattgctcct |
9526485 |
T |
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| Q |
207 |
aatgcacctctatagtatgcacttgtaacagccctgtacctatatcagcaacaaaatttacatgtatatctaatatgtcaaaagaatttatctggagtct |
306 |
Q |
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| T |
9526486 |
aatgcacctctatagtatgcacttgttacagctctgtacctatatcaacaacataatttacatgtatatatcatatgtcaaaagaatttatctgcagtat |
9526585 |
T |
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| Q |
307 |
acacttaaatgatcaggggttattttttgatttagccggggcagattccgtatacaactacagagactaattctacgatataactgatatttatttaaga |
406 |
Q |
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| T |
9526586 |
acacataaatgatcaggggttattttttgatttaaccggggcagattccgtatacaactacagagactaattctacgatataactgatatttatttaaga |
9526685 |
T |
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| Q |
407 |
tgccgatctctcccaacatttttggttctttataaacctaagtatcgaacatttgaccacatacttaaaagattaaatgtcaataacatgtcattggtaa |
506 |
Q |
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| T |
9526686 |
tgccgatctctcccaacatttttggttctttataaacttaagtatcgaacatttgactacatacttaaaagattaaatgtcaataatatgtcattggtaa |
9526785 |
T |
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| Q |
507 |
atgatcaaatgttatcggtatactttttatatttgtacttctatgaggtatcta |
560 |
Q |
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| T |
9526786 |
atgatcaaatgttatcggtatactttttatatttgtacttctatgaggtatcta |
9526839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 8e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 75 - 251
Target Start/End: Complemental strand, 48932348 - 48932172
Alignment:
| Q |
75 |
acaaggtcacctttgttaccaactagcatgatcacaattgagttatctgcatgtgctctaagttcctcaacccatttagcaacatgatcaaatgattgtc |
174 |
Q |
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| T |
48932348 |
acaagatcacctttgttaccaattagcatgatcacgatggagttgtcggcgtgtgaccgtagttcctcaatccatctagctacatgatcaaacgtttgtc |
48932249 |
T |
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| Q |
175 |
ttttggttatgtcatatactagcatggctcctaatgcacctctatagtatgcacttgtaacagccctgtacctatat |
251 |
Q |
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| T |
48932248 |
ttttagttatgtcatacaccagcatggcccctaatgctcctctgtagtatgcacttgtaaccgctctgtacctatat |
48932172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0262 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0262
Description:
Target: scaffold0262; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 159 - 250
Target Start/End: Complemental strand, 14479 - 14388
Alignment:
| Q |
159 |
tgatcaaatgattgtcttttggttatgtcatatactagcatggctcctaatgcacctctatagtatgcacttgtaacagccctgtacctata |
250 |
Q |
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| T |
14479 |
tgatcgaatgattgacgttttgtcatgtcgtaaactaacattgccccaactgcacctcgatagtatgcactagtaactgccctgtacctata |
14388 |
T |
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