View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2811_2D_high_2 (Length: 490)
Name: NF2811_2D_high_2
Description: NF2811_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2811_2D_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 425; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 19 - 479
Target Start/End: Original strand, 37136824 - 37137284
Alignment:
| Q |
19 |
gtaagcagacgattgacttcctgcaacacagtactcacatggtgagccatcagaaaatatgtgattgatgcaagcaagcaagcaccaatgcaattaaacc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37136824 |
gtaagcagacgattgacttcctgcaacacagttctcacatggcgaaccatcagaaaatatgtgattgatgcaagcaagcaagcaccaatgcaattaaacc |
37136923 |
T |
|
| Q |
119 |
aatttagaaggaatatataccatccacctccaatgaagatcgaatattcaaaagcaaaaacatgagtatcaaggaagctaaatttttaaacacagatgga |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
37136924 |
aatttagaaggaatatataccatccacctccaatgaagatcgaatattcaaaagcaaaaacatgagtatcaaggaagctaaatttttaaagacagatgga |
37137023 |
T |
|
| Q |
219 |
atcggacaattgtttagatgctactgcaatgtaacagttcattaagtggttaatgaatatagcaaggtgtcgcaattcattagccatccactgaacacaa |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37137024 |
atcggacaattgtttagatgctactgcaatgtaacagttcattaagtggttaatgaatatagcaaggtgtcgcaattcattagccatccactgaacacaa |
37137123 |
T |
|
| Q |
319 |
ttatcacgattttgagcatcaataaccataatttttaagtgtgtatttgaaaacttgcaaatcatgtgcatttgaacataatttgcataactaatctgaa |
418 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37137124 |
ttatcacgattttgagcatcaataaccacaatttttaagtgtatatttgaaaacttgcaaatcatgtgcatttgaacataatttgcataactaatctgaa |
37137223 |
T |
|
| Q |
419 |
aattatgattaattacattcacattcgttattaatcaattgtctacagtattggtttaatt |
479 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||| |
|
|
| T |
37137224 |
aattatgattaattacattcacattcgttattaattaattgtctacagtatttggttaatt |
37137284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 268 - 321
Target Start/End: Complemental strand, 40829718 - 40829665
Alignment:
| Q |
268 |
ttaatgaatatagcaaggtgtcgcaattcattagccatccactgaacacaatta |
321 |
Q |
| |
|
|||||||||||| |||||||| |||| |||||| ||||||||||| |||||||| |
|
|
| T |
40829718 |
ttaatgaatataacaaggtgtagcaactcattaaccatccactgagcacaatta |
40829665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 321
Target Start/End: Original strand, 37562169 - 37562221
Alignment:
| Q |
269 |
taatgaatatagcaaggtgtcgcaattcattagccatccactgaacacaatta |
321 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||| ||||| ||||||| |
|
|
| T |
37562169 |
taatgaatataacaaggtgtcgcaattcattaatcatcctctgaatacaatta |
37562221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 37141176 - 37141217
Alignment:
| Q |
17 |
cagtaagcagacgattgacttcctgcaacacagtactcacat |
58 |
Q |
| |
|
||||||||| |||||| |||||||||||||| |||||||||| |
|
|
| T |
37141176 |
cagtaagcaaacgatttacttcctgcaacacggtactcacat |
37141217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 268 - 331
Target Start/End: Complemental strand, 10890453 - 10890389
Alignment:
| Q |
268 |
ttaatgaatatagcaaggtgtcgcaattcattagccatccactgaacacaattat-cacgatttt |
331 |
Q |
| |
|
|||||||||||| ||||||||| | | |||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
10890453 |
ttaatgaatataacaaggtgtcacgactcattaaccatccactgaacacaattatccacgatttt |
10890389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 265 - 321
Target Start/End: Complemental strand, 29246466 - 29246410
Alignment:
| Q |
265 |
tggttaatgaatatagcaaggtgtcgcaattcattagccatccactgaacacaatta |
321 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||| |||| ||||||||| ||||| |
|
|
| T |
29246466 |
tggttaatgaatataacaaggtgtcgcaactcattaaccatacactgaacataatta |
29246410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 264 - 321
Target Start/End: Original strand, 32424381 - 32424438
Alignment:
| Q |
264 |
gtggttaatgaatatagcaaggtgtcgcaattcattagccatccactgaacacaatta |
321 |
Q |
| |
|
|||||||||||||||| ||| |||| |||||||||| ||||||||| |||||||||| |
|
|
| T |
32424381 |
gtggttaatgaatataacaatgtgttccaattcattatccatccacttaacacaatta |
32424438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 314
Target Start/End: Complemental strand, 34837474 - 34837425
Alignment:
| Q |
265 |
tggttaatgaatatagcaaggtgtcgcaattcattagccatccactgaac |
314 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||| || ||||| |
|
|
| T |
34837474 |
tggttaatgaatatagcaaggtgtaacaattcattggccatgcaatgaac |
34837425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 269 - 321
Target Start/End: Original strand, 32581074 - 32581126
Alignment:
| Q |
269 |
taatgaatatagcaaggtgtcgcaattcattagccatccactgaacacaatta |
321 |
Q |
| |
|
||||||||||| |||| |||||||| |||||| | ||||||| |||||||||| |
|
|
| T |
32581074 |
taatgaatataacaagctgtcgcaactcattaacaatccactaaacacaatta |
32581126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University