View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2811_2D_high_9 (Length: 271)
Name: NF2811_2D_high_9
Description: NF2811_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2811_2D_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 9546355 - 9546616
Alignment:
| Q |
1 |
gttcatactgatcatcttgatgttgttgatcatgacgttgtgtatgagttttccatatgttgttatcttcgcgagacaatgatatgagnnnnnnngctac |
100 |
Q |
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| T |
9546355 |
gttcatactgatcatcttgatgctgttgatcatgacgttgtgtatgagttttccatatgttgttatcttcgcgagacaatgatatgagaaaaaaagctac |
9546454 |
T |
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| Q |
101 |
ttcttcttcagttgttatatccgatgaagaactcagtacagaaacagactcattctgtactgagtttttcaccggatc---atctttcttgacccgtttg |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
9546455 |
ttcttcttcagttgttatatccgatgaagaactcagtacagaaaaagactcgttctgtactgagtttttcaccggatcattatctttcttgacccgtttg |
9546554 |
T |
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| Q |
198 |
gatcgtggaccagttggattctttgatgattcagtttcactttctctatcttcctgaagaat |
259 |
Q |
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|||||||| ||||||||||||||||| || |||||||||||| ||||||||||||||||||| |
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| T |
9546555 |
gatcgtggtccagttggattctttgacgactcagtttcacttcctctatcttcctgaagaat |
9546616 |
T |
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