View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2811_2D_low_11 (Length: 353)
Name: NF2811_2D_low_11
Description: NF2811_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2811_2D_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 21 - 334
Target Start/End: Complemental strand, 3208524 - 3208211
Alignment:
| Q |
21 |
agtagctaagcttggcgacgggacagaatatcttggagaatcagttttccaaccaaaagactttgcatcgacattattgccacttgtgtatgcaggttca |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3208524 |
agtagctaagcttggcgacgggacagaatatcttggagaatcagttttccaaccaaaagactttgcatcgacattattgccacttgtgtatgcaggttca |
3208425 |
T |
|
| Q |
121 |
attaatacaagtgatgattccattgccttttgtggtcctattgccatgaagaaggttgatgttaagggaaaaatagttgtgtgtgagcaaggtgggtttg |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3208424 |
attaatacaagtgatgattccattgccttttgtggtcctattgccatgaagaaggttgatgttaagggaaaaatagttgtgtgtgagcaaggtgggtttg |
3208325 |
T |
|
| Q |
221 |
ttggaagagtagccaaaggtcaagcagttaaagatgccggtggtgctgctatgatacttttgaacagtgaaggtgaagatttcaatccaattgctgatgt |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3208324 |
ttggaagagtagccaaaggtcaagcagttaaagatgccggtggtgctgctatgatacttttgaacagtgaaggtgaagatttcaatccaattgctgatgt |
3208225 |
T |
|
| Q |
321 |
tcatgttctacctg |
334 |
Q |
| |
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|||||||||||||| |
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| T |
3208224 |
tcatgttctacctg |
3208211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 21 - 334
Target Start/End: Complemental strand, 3202550 - 3202237
Alignment:
| Q |
21 |
agtagctaagcttggcgacgggacagaatatcttggagaatcagttttccaaccaaaagactttgcatcgacattattgccacttgtgtatgcaggttca |
120 |
Q |
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||||||||||||||| || ||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |
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| T |
3202550 |
agtagctaagcttggggatgggacggaatatctcggagaatcagttttccaaccaaaagactttgcatcaacattattgccacttgtgtatgcaggtgca |
3202451 |
T |
|
| Q |
121 |
attaatacaagtgatgattccattgccttttgtggtcctattgccatgaagaaggttgatgttaagggaaaaatagttgtgtgtgagcaaggtgggtttg |
220 |
Q |
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||||| ||||||||||||| ||||||||||||| |||| || ||||| |||| ||||||||||||||||| |||| ||||||||||||| ||| | | |
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| T |
3202450 |
attaacacaagtgatgatttcattgccttttgtaatcctttttccatggagaatgttgatgttaagggaaaggtagtagtgtgtgagcaagatggatcgg |
3202351 |
T |
|
| Q |
221 |
ttggaagagtagccaaaggtcaagcagttaaagatgccggtggtgctgctatgatacttttgaacagtgaaggtgaagatttcaatccaattgctgatgt |
320 |
Q |
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||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||| |
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| T |
3202350 |
ttgaaagagtagccaaaggtcaagcagttaaagatgctggtggtgctgctatgatacttttgaatggtgaagatgaagctttcaatccaattgctgatgt |
3202251 |
T |
|
| Q |
321 |
tcatgttctacctg |
334 |
Q |
| |
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|||||||||||||| |
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| T |
3202250 |
tcatgttctacctg |
3202237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 23 - 263
Target Start/End: Complemental strand, 3216461 - 3216221
Alignment:
| Q |
23 |
tagctaagcttggcgacgggacagaatatcttggagaatcagttttccaaccaaaagactttgcatcgacattattgccacttgtgtatgcaggttcaat |
122 |
Q |
| |
|
||||||| |||||| ||||| | ||||| ||||||||||||| || ||||||||||| |||||||| ||| | ||||||||||||||||||||||| | |
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| T |
3216461 |
tagctaaacttggcaacggggaaaaatatattggagaatcagtgtttcaaccaaaagagtttgcatcaacactgttgccacttgtgtatgcaggttctgt |
3216362 |
T |
|
| Q |
123 |
taatacaagtgatgattccattgccttttgtggtcctattgccatgaagaaggttgatgttaagggaaaaatagttgtgtgtgagcaaggtgggtttgtt |
222 |
Q |
| |
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||||| ||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||| |||||||| ||||||| ||||| |
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| T |
3216361 |
taatataagtgataattccattgccttttgtggtcctatttccatgaagaacattgatgttaagggaaaggtagttttgtgtgaggaaggtggacttgtt |
3216262 |
T |
|
| Q |
223 |
ggaagagtagccaaaggtcaagcagttaaagatgccggtgg |
263 |
Q |
| |
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| || ||| |||| ||||||||||||||| || ||||| |
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| T |
3216261 |
tcacaagcagcgaaagctcaagcagttaaagacgctggtgg |
3216221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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