View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2811_2D_low_13 (Length: 331)
Name: NF2811_2D_low_13
Description: NF2811_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2811_2D_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 26 - 311
Target Start/End: Complemental strand, 31205115 - 31204826
Alignment:
| Q |
26 |
ggactcgatggatcaatcgttggggcaccctgatcattggatgctgaagcgttgttgcaaggagccatggatctcactgtctctaaaaccatatgagaat |
125 |
Q |
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| T |
31205115 |
ggactcgatggatcaatcgttggggcaccctgatcattggatgctgaagcgttgttgcaaggagccatggatctcactgtctctaaaaccatatgagaat |
31205016 |
T |
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| Q |
126 |
aaataaaagatgaaaaggaataaccaattaggtttccaatgattgaattgaattatttctcaatatcaaagtagtacaatgaaatg----gcttatatat |
221 |
Q |
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| T |
31205015 |
aaataaaagatgaaaagaaataaccaattaggtttccaatgattaaattgaattatttctcaatatcaaagtagtacaatgaaatggcttgcttatatat |
31204916 |
T |
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| Q |
222 |
ttgttactagcctttatttaatagtaacgaaagacaaaaggtaatagtaacgtaaataaccaagtgagcatgattttaggcattaggtat |
311 |
Q |
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| T |
31204915 |
ttgttactagcctttatttaatagtaatgaaagacaaaaggtaatagtaacgtaaataaccaactgagcatgattttaggcattaggtat |
31204826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 12 - 221
Target Start/End: Original strand, 18436225 - 18436431
Alignment:
| Q |
12 |
gatggacatcatagggactcgatggatcaatcgttggggcaccctgatcattggatgctgaagcgttgttgcaaggagccatggatctcactg-tctcta |
110 |
Q |
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| T |
18436225 |
gatggacataataaggacttgatggatcaattgctggagcaccctgctcattagatgttgaagcattgttgcgaggtgccatggatcttacggctctatg |
18436324 |
T |
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| Q |
111 |
aaaccatatgagaataaataaaagatg-aaaaggaataaccaattaggtttccaatgattgaattgaattatttctcaatatcaaagtagtacaatgaaa |
209 |
Q |
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| T |
18436325 |
ataccatatgagaataagtaaaagatgaaaaagggataaccaattaggtttccaat-----aattgaattatttctcaatgtcaactcagtataatgaaa |
18436419 |
T |
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| Q |
210 |
tggcttatatat |
221 |
Q |
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||| ||||||| |
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| T |
18436420 |
aggcatatatat |
18436431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 117 - 221
Target Start/End: Original strand, 18431736 - 18431836
Alignment:
| Q |
117 |
tatgagaataaataaaagatgaaaa-ggaataaccaattaggtttccaatgattgaattgaattatttctcaatatcaaagtagtacaatgaaatggctt |
215 |
Q |
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||||||||||| ||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||| |||| |||| ||||||| ||| | |
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| T |
18431736 |
tatgagaataagtaaaagatgaaaaagggataaccaattaggtttccaat-----aattgaattatttctcaatgtcaactcagtataatgaaaaggcat |
18431830 |
T |
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| Q |
216 |
atatat |
221 |
Q |
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|||||| |
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| T |
18431831 |
atatat |
18431836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 78 - 174
Target Start/End: Complemental strand, 30151775 - 30151677
Alignment:
| Q |
78 |
tgttgcaaggagccatggatctcactg-tctctaaaaccatatgagaataaataaaagatgaaaa-ggaataaccaattaggtttccaatgattgaatt |
174 |
Q |
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| T |
30151775 |
tgttgcgaggtgccatggatctcacggctctatgataccatatgagaataagtaaaagatgaaaaagggataaccaattaggtttccaataattgaatt |
30151677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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