View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2811_2D_low_15 (Length: 304)

Name: NF2811_2D_low_15
Description: NF2811_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2811_2D_low_15
NF2811_2D_low_15
[»] chr4 (26 HSPs)
chr4 (57-304)||(44692758-44693003)
chr4 (70-149)||(44683056-44683134)
chr4 (13-58)||(22800703-22800749)
chr4 (13-59)||(31849437-31849482)
chr4 (236-286)||(44632538-44632588)
chr4 (13-57)||(37089211-37089256)
chr4 (13-57)||(5635317-5635360)
chr4 (13-56)||(14787274-14787318)
chr4 (13-56)||(14789273-14789317)
chr4 (13-56)||(36921338-36921382)
chr4 (13-56)||(38928024-38928068)
chr4 (13-56)||(49089000-49089044)
chr4 (13-56)||(8631260-8631302)
chr4 (13-56)||(24348650-24348692)
chr4 (13-59)||(7941772-7941817)
chr4 (13-56)||(40091259-40091304)
chr4 (13-57)||(6765291-6765336)
chr4 (13-57)||(16455670-16455715)
chr4 (15-56)||(36378736-36378777)
chr4 (13-53)||(36919432-36919473)
chr4 (13-57)||(2484714-2484757)
chr4 (13-56)||(2891736-2891780)
chr4 (13-56)||(16453752-16453796)
chr4 (13-57)||(17662091-17662134)
chr4 (13-56)||(22802577-22802621)
chr4 (13-56)||(53405582-53405626)
[»] chr8 (9 HSPs)
chr8 (13-57)||(27829747-27829791)
chr8 (13-56)||(27827436-27827479)
chr8 (13-56)||(15073158-15073202)
chr8 (13-57)||(15809669-15809712)
chr8 (13-56)||(2467979-2468022)
chr8 (13-56)||(32339761-32339803)
chr8 (13-49)||(2467887-2467923)
chr8 (13-56)||(14477696-14477740)
chr8 (13-56)||(15068428-15068472)
[»] chr7 (10 HSPs)
chr7 (13-56)||(7094301-7094344)
chr7 (13-56)||(7092054-7092097)
chr7 (22-57)||(43253357-43253392)
chr7 (13-56)||(48458058-48458100)
chr7 (13-56)||(31434892-31434937)
chr7 (13-54)||(38397044-38397084)
chr7 (13-57)||(2935674-2935717)
chr7 (13-56)||(4295781-4295825)
chr7 (13-56)||(13099317-13099361)
chr7 (13-56)||(27306076-27306120)
[»] chr3 (20 HSPs)
chr3 (13-56)||(1321854-1321897)
chr3 (14-61)||(4103731-4103778)
chr3 (13-56)||(42990674-42990717)
chr3 (13-57)||(53915337-53915382)
chr3 (13-56)||(36012199-36012243)
chr3 (13-56)||(6232165-6232208)
chr3 (13-56)||(11168477-11168519)
chr3 (13-56)||(41849428-41849470)
chr3 (13-56)||(42992756-42992799)
chr3 (13-56)||(51726847-51726889)
chr3 (13-56)||(1313777-1313822)
chr3 (13-54)||(47701522-47701564)
chr3 (13-54)||(5192026-5192066)
chr3 (13-57)||(10084228-10084271)
chr3 (13-56)||(18096740-18096784)
chr3 (13-56)||(18099010-18099054)
chr3 (13-41)||(27635514-27635542)
chr3 (13-56)||(43421260-43421304)
chr3 (13-56)||(45883313-45883357)
chr3 (13-41)||(51674625-51674653)
[»] scaffold0025 (1 HSPs)
scaffold0025 (13-57)||(69132-69176)
[»] chr5 (11 HSPs)
chr5 (13-57)||(658203-658247)
chr5 (13-56)||(10587209-10587252)
chr5 (13-57)||(21684293-21684336)
chr5 (13-56)||(36402170-36402214)
chr5 (13-57)||(38882483-38882526)
chr5 (13-56)||(34476894-34476936)
chr5 (13-56)||(6745463-6745507)
chr5 (13-56)||(18511056-18511100)
chr5 (13-56)||(18597035-18597079)
chr5 (13-56)||(34530559-34530603)
chr5 (13-56)||(41585580-41585624)
[»] chr1 (17 HSPs)
chr1 (13-63)||(18839978-18840029)
chr1 (13-56)||(6995540-6995584)
chr1 (12-56)||(20302836-20302879)
chr1 (13-56)||(31424862-31424906)
chr1 (13-56)||(39462912-39462956)
chr1 (13-56)||(3579431-3579474)
chr1 (13-56)||(13358969-13359011)
chr1 (13-56)||(13447117-13447159)
chr1 (13-56)||(20291852-20291894)
chr1 (13-59)||(30780438-30780485)
chr1 (13-56)||(4131221-4131266)
chr1 (13-56)||(50078635-50078680)
chr1 (13-57)||(39932470-39932515)
chr1 (13-56)||(2949079-2949123)
chr1 (13-57)||(15294677-15294720)
chr1 (13-56)||(16429343-16429387)
chr1 (13-56)||(31422706-31422750)
[»] scaffold0068 (1 HSPs)
scaffold0068 (13-57)||(29574-29617)
[»] scaffold0031 (1 HSPs)
scaffold0031 (13-56)||(79587-79631)
[»] scaffold0005 (2 HSPs)
scaffold0005 (13-56)||(50413-50457)
scaffold0005 (13-56)||(52412-52456)
[»] chr6 (9 HSPs)
chr6 (13-56)||(9020354-9020398)
chr6 (13-56)||(13057615-13057659)
chr6 (13-56)||(2628727-2628769)
chr6 (13-56)||(30034447-30034489)
chr6 (13-56)||(13040188-13040232)
chr6 (13-56)||(15367454-15367498)
chr6 (13-56)||(18322523-18322566)
chr6 (13-57)||(22611095-22611139)
chr6 (13-57)||(33311556-33311599)
[»] chr2 (8 HSPs)
chr2 (13-56)||(19501843-19501885)
chr2 (13-59)||(17849483-17849531)
chr2 (13-53)||(27105168-27105209)
chr2 (13-58)||(28459036-28459081)
chr2 (13-56)||(11739421-11739465)
chr2 (13-56)||(21520534-21520578)
chr2 (13-56)||(43623423-43623467)
chr2 (13-56)||(45238842-45238886)
[»] scaffold0004 (1 HSPs)
scaffold0004 (13-56)||(80261-80305)


Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 57 - 304
Target Start/End: Original strand, 44692758 - 44693003
Alignment:
Q  57 ggaattaactcttgtttgttttgtttctttgaggtccaatagttggtcatgctatgatatggatcacattatctttcattatatcaactcaactttttat 156  Q
    |||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44692758 ggaattaactc--gtttgttttgcttctttgaggtccaatagttggtcatgctatgatatggatcacattatctttcattatatcaactcaactttttat 44692855  T
Q  157 tctatgacttatgtatagatattgaatgaatcataacttctgtgtcaaatacttatttatagtttatcatgtttcattacctagtgctatgtgccaaata 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44692856 tctatgacttatgtatagatattgaatgaatcataacttctgtgtcaaatacttatttatagtttatcatgtttcattacctagtgctatgtgccaaata 44692955  T
Q  257 tctcctttgctcttggattaccatactttcatttaccgtttcctgtct 304  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  44692956 tctcctttgctcttggattaccatattttcatttaccgtttcctgtct 44693003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 149
Target Start/End: Original strand, 44683056 - 44683134
Alignment:
Q  70 gtttgttttgtttctttgaggtccaatagttggtcatgctatgatatggatcacattatctttcattatatcaactcaac 149  Q
    |||||||||| ||||||| ||||||||||    |||||||||||||||||||| |||||| |||||||||||| ||||||    
T  44683056 gtttgttttgcttctttggggtccaatagacattcatgctatgatatggatcatattatc-ttcattatatcagctcaac 44683134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 22800749 - 22800703
Alignment:
Q  13 acatcaagtttgttattggtgtga-ttttcatagaattcgcaacagg 58  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||    
T  22800749 acatcaagtttgttattggtgtgatttttcatcgaattcgcaacagg 22800703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 31849482 - 31849437
Alignment:
Q  13 acatcaagtttgttattggtgtgattttcatagaattcgcaacagga 59  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||    
T  31849482 acatcaagtt-gttattggtgtgattttcatcgaattcgcaacagga 31849437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 286
Target Start/End: Original strand, 44632538 - 44632588
Alignment:
Q  236 cctagtgctatgtgccaaatatctcctttgctcttggattaccatactttc 286  Q
    |||||||||||||||||||||||| ||||| ||||||||| ||||| ||||    
T  44632538 cctagtgctatgtgccaaatatctactttgttcttggattgccatattttc 44632588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 37089256 - 37089211
Alignment:
Q  13 acatcaagtttgttattggtgtga-ttttcatagaattcgcaacag 57  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||    
T  37089256 acatcaagtttgttattggtgtgatttttcatcgaattcgcaacag 37089211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 5635360 - 5635317
Alignment:
Q  13 acatcaagtttgttattggtgtgattttcatagaattcgcaacag 57  Q
    |||||||||| |||||||||||||||||||| |||||||||||||    
T  5635360 acatcaagtt-gttattggtgtgattttcatcgaattcgcaacag 5635317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 14787318 - 14787274
Alignment:
Q  13 acatcaagtttgttattggtgtga-ttttcatagaattcgcaaca 56  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||    
T  14787318 acatcaagtttgttattggtgtgatttttcatcgaattcgcaaca 14787274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 14789317 - 14789273
Alignment:
Q  13 acatcaagtttgttattggtgtga-ttttcatagaattcgcaaca 56  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||    
T  14789317 acatcaagtttgttattggtgtgatttttcatcgaattcgcaaca 14789273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 36921382 - 36921338
Alignment:
Q  13 acatcaagtttgttattggtgtga-ttttcatagaattcgcaaca 56  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||    
T  36921382 acatcaagtttgttattggtgtgatttttcatcgaattcgcaaca 36921338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 38928068 - 38928024
Alignment:
Q  13 acatcaagtttgttattggtgtga-ttttcatagaattcgcaaca 56  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||    
T  38928068 acatcaagtttgttattggtgtgatttttcatcgaattcgcaaca 38928024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 49089000 - 49089044
Alignment:
Q  13 acatcaagtttgttattggtgtga-ttttcatagaattcgcaaca 56  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||    
T  49089000 acatcaagtttgttattggtgtgatttttcatcgaattcgcaaca 49089044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 8631302 - 8631260
Alignment:
Q  13 acatcaagtttgttattggtgtgattttcatagaattcgcaaca 56  Q
    |||||||||| |||||||||||||||||||| ||||||||||||    
T  8631302 acatcaagtt-gttattggtgtgattttcatcgaattcgcaaca 8631260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 24348650 - 24348692
Alignment:
Q  13 acatcaagtttgttattggtgtgattttcatagaattcgcaaca 56  Q
    |||||||||| |||||||||||||||||||| ||||||||||||    
T  24348650 acatcaagtt-gttattggtgtgattttcatcgaattcgcaaca 24348692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 7941772 - 7941817
Alignment:
Q  13 acatcaagtttgttattggtgtgattttcatagaattcgcaacagga 59  Q
    |||||||||| ||| |||||||||||||||| |||||||||||||||    
T  7941772 acatcaagtt-gttgttggtgtgattttcatcgaattcgcaacagga 7941817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 40091304 - 40091259
Alignment:
Q  13 acatcaagtttgttattggtgtga--ttttcatagaattcgcaaca 56  Q
    ||||||||||||||||||||||||  ||||||| ||||||||||||    
T  40091304 acatcaagtttgttattggtgtgaatttttcatcgaattcgcaaca 40091259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 6765291 - 6765336
Alignment:
Q  13 acatcaagtttgttattggtgtga-ttttcatagaattcgcaacag 57  Q
    |||||||||||||||||||||||| ||||||| |||||| ||||||    
T  6765291 acatcaagtttgttattggtgtgatttttcatcgaattcacaacag 6765336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 16455670 - 16455715
Alignment:
Q  13 acatcaagtttgttattggtgtga-ttttcatagaattcgcaacag 57  Q
    |||||||||||||||||||||||| ||||||| |||||| ||||||    
T  16455670 acatcaagtttgttattggtgtgatttttcatcgaattcacaacag 16455715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 36378736 - 36378777
Alignment:
Q  15 atcaagtttgttattggtgtgattttcatagaattcgcaaca 56  Q
    ||||||| | ||||||||||||||||||| ||||||||||||    
T  36378736 atcaagtattttattggtgtgattttcatcgaattcgcaaca 36378777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 36919473 - 36919432
Alignment:
Q  13 acatcaagtttgttattggtgtga-ttttcatagaattcgca 53  Q
    |||||||||||||||||||||||| ||||||| |||||||||    
T  36919473 acatcaagtttgttattggtgtgatttttcatcgaattcgca 36919432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 2484757 - 2484714
Alignment:
Q  13 acatcaagtttgttattggtgtgattttcatagaattcgcaacag 57  Q
    |||||||||| |||||||||||||||||||| |||||| ||||||    
T  2484757 acatcaagtt-gttattggtgtgattttcatcgaattcacaacag 2484714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 2891736 - 2891780
Alignment:
Q  13 acatcaagtttgttattggtgtga-ttttcatagaattcgcaaca 56  Q
    |||||||||||||||||||||||| ||||||| |||||| |||||    
T  2891736 acatcaagtttgttattggtgtgatttttcatcgaattcacaaca 2891780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 16453752 - 16453796
Alignment:
Q  13 acatcaagtttgttattggtgtga-ttttcatagaattcgcaaca 56  Q
    |||||||||||||||||||||||| ||||||| |||||| |||||    
T  16453752 acatcaagtttgttattggtgtgatttttcatcgaattcacaaca 16453796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 17662134 - 17662091
Alignment:
Q  13 acatcaagtttgttattggtgtgattttcatagaattcgcaacag 57  Q
    |||||||||| |||||||||||||||||||  |||||||||||||    
T  17662134 acatcaagtt-gttattggtgtgattttcaacgaattcgcaacag 17662091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 22802621 - 22802577
Alignment:
Q  13 acatcaagtttgttattggtgtga-ttttcatagaattcgcaaca 56  Q
    |||||||||||||||||||||||| ||||||| |||||| |||||    
T  22802621 acatcaagtttgttattggtgtgatttttcatcgaattcacaaca 22802577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 53405582 - 53405626
Alignment:
Q  13 acatcaagtttgttattggtgtga-ttttcatagaattcgcaaca 56  Q
    ||||||||||| |||||||||||| ||||||| ||||||||||||    
T  53405582 acatcaagtttattattggtgtgatttttcatcgaattcgcaaca 53405626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 27829747 - 27829791
Alignment:
Q  13 acatcaagtttgttattggtgtgattttcatagaattcgcaacag 57  Q
    ||||||||||||||||||||||||||||||| |||||||||||||    
T  27829747 acatcaagtttgttattggtgtgattttcatcgaattcgcaacag 27829791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 27827436 - 27827479
Alignment:
Q  13 acatcaagtttgttattggtgtgattttcatagaattcgcaaca 56  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  27827436 acatcaagtttgttattggtgtgattttcatcgaattcgcaaca 27827479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 15073158 - 15073202
Alignment:
Q  13 acatcaagtttgttattggtgtga-ttttcatagaattcgcaaca 56  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||    
T  15073158 acatcaagtttgttattggtgtgatttttcatcgaattcgcaaca 15073202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 15809669 - 15809712
Alignment:
Q  13 acatcaagtttgttattggtgtgattttcatagaattcgcaacag 57  Q
    |||||||||| |||||||||||||||||||| |||||||||||||    
T  15809669 acatcaagtt-gttattggtgtgattttcatcgaattcgcaacag 15809712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 2468022 - 2467979
Alignment:
Q  13 acatcaagtttgttattggtgtgattttcatagaattcgcaaca 56  Q
    ||||||||||| ||||||||||||||||||| |||||| |||||    
T  2468022 acatcaagtttattattggtgtgattttcatcgaattcacaaca 2467979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 32339761 - 32339803
Alignment:
Q  13 acatcaagtttgttattggtgtgattttcatagaattcgcaaca 56  Q
    |||||||||| |||||||||||||||||||| ||||||||||||    
T  32339761 acatcaagtt-gttattggtgtgattttcatcgaattcgcaaca 32339803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 2467923 - 2467887
Alignment:
Q  13 acatcaagtttgttattggtgtgattttcatagaatt 49  Q
    ||||||||||| ||||||||||||||||||| |||||    
T  2467923 acatcaagtttattattggtgtgattttcatcgaatt 2467887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 14477696 - 14477740
Alignment:
Q  13 acatcaagtttgttattggtgtga-ttttcatagaattcgcaaca 56  Q
    |||||||||||||||||||||||| ||||||| |||||| |||||    
T  14477696 acatcaagtttgttattggtgtgatttttcatcgaattcacaaca 14477740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 15068428 - 15068472
Alignment:
Q  13 acatcaagtttgttattggtgtga-ttttcatagaattcgcaaca 56  Q
    |||||||||||||| ||||||||| ||||||| ||||||||||||    
T  15068428 acatcaagtttgttgttggtgtgatttttcatcgaattcgcaaca 15068472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 7094344 - 7094301
Alignment:
Q  13 acatcaagtttgttattggtgtgattttcatagaattcgcaaca 56  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  7094344 acatcaagtttgttattggtgtgattttcatcgaattcgcaaca 7094301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 7092097 - 7092054
Alignment:
Q  13 acatcaagtttgttattggtgtgattttcatagaattcgcaaca 56  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||    
T  7092097 acatcaagtttgttattggtgtgattttcatcgaatttgcaaca 7092054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 57
Target Start/End: Complemental strand, 43253392 - 43253357
Alignment:
Q  22 ttgttattggtgtgattttcatagaattcgcaacag 57  Q
    |||||||||||||||||||||| |||||||||||||    
T  43253392 ttgttattggtgtgattttcatcgaattcgcaacag 43253357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 48458058 - 48458100
Alignment:
Q  13 acatcaagtttgttattggtgtgattttcatagaattcgcaaca 56  Q
    |||||||||| |||||||||||||||||||| ||||||||||||    
T  48458058 acatcaagtt-gttattggtgtgattttcatcgaattcgcaaca 48458100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 31434937 - 31434892
Alignment:
Q  13 acatcaagtttgttattggtgtgattt--tcatagaattcgcaaca 56  Q
    |||||||||||||||||||||||||||  |||| ||||||||||||    
T  31434937 acatcaagtttgttattggtgtgattttctcatcgaattcgcaaca 31434892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 38397044 - 38397084
Alignment:
Q  13 acatcaagtttgttattggtgtgattttcatagaattcgcaa 54  Q
    |||||||||| |||||||||||||||||||| ||||||||||    
T  38397044 acatcaagtt-gttattggtgtgattttcatcgaattcgcaa 38397084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 2935674 - 2935717
Alignment:
Q  13 acatcaagtttgttattggtgtgattttcatagaattcgcaacag 57  Q
    |||||||||| |||||||||||||||||||| |||||| ||||||    
T  2935674 acatcaagtt-gttattggtgtgattttcatcgaattcacaacag 2935717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 4295825 - 4295781
Alignment:
Q  13 acatcaagtttgttattggtgtga-ttttcatagaattcgcaaca 56  Q
    |||||||||||||||||||||||| ||||||| ||||| ||||||    
T  4295825 acatcaagtttgttattggtgtgatttttcatcgaatttgcaaca 4295781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 13099361 - 13099317
Alignment:
Q  13 acatcaagtttgttattggtgtga-ttttcatagaattcgcaaca 56  Q
    |||||||||||||||||||||||| ||||||| |||||| |||||    
T  13099361 acatcaagtttgttattggtgtgatttttcatcgaattcacaaca 13099317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 27306120 - 27306076
Alignment:
Q  13 acatcaagtttgttattggtgtgat-tttcatagaattcgcaaca 56  Q
    ||||||||||||||||||||||||| | |||| ||||||||||||    
T  27306120 acatcaagtttgttattggtgtgatctctcatcgaattcgcaaca 27306076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 1321854 - 1321897
Alignment:
Q  13 acatcaagtttgttattggtgtgattttcatagaattcgcaaca 56  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  1321854 acatcaagtttgttattggtgtgattttcatcgaattcgcaaca 1321897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 61
Target Start/End: Complemental strand, 4103778 - 4103731
Alignment:
Q  14 catcaagtttgttattggtgtgattttcatagaattcgcaacaggaat 61  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||||    
T  4103778 catcaagtttgttattggtgtgattttcatcgaattcgcaacatgaat 4103731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 42990674 - 42990717
Alignment:
Q  13 acatcaagtttgttattggtgtgattttcatagaattcgcaaca 56  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  42990674 acatcaagtttgttattggtgtgattttcatcgaattcgcaaca 42990717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 53915382 - 53915337
Alignment:
Q  13 acatcaagtttgttattggtgtga-ttttcatagaattcgcaacag 57  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||    
T  53915382 acatcaagtttgttattggtgtgatttttcatcgaattcgcaacag 53915337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 36012199 - 36012243
Alignment:
Q  13 acatcaagtttgttattggtgtga-ttttcatagaattcgcaaca 56  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||    
T  36012199 acatcaagtttgttattggtgtgatttttcatcgaattcgcaaca 36012243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 6232165 - 6232208
Alignment:
Q  13 acatcaagtttgttattggtgtgattttcatagaattcgcaaca 56  Q
    ||||||| ||||||||| ||||||||||||| ||||||||||||    
T  6232165 acatcaaatttgttattagtgtgattttcatcgaattcgcaaca 6232208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 11168477 - 11168519
Alignment:
Q  13 acatcaagtttgttattggtgtgattttcatagaattcgcaaca 56  Q
    |||||||||| |||||||||||||||||||| ||||||||||||    
T  11168477 acatcaagtt-gttattggtgtgattttcatcgaattcgcaaca 11168519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 41849428 - 41849470
Alignment:
Q  13 acatcaagtttgttattggtgtgattttcatagaattcgcaaca 56  Q
    |||||||||| |||||||||||||||||||| ||||||||||||    
T  41849428 acatcaagtt-gttattggtgtgattttcatcgaattcgcaaca 41849470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 42992756 - 42992799
Alignment:
Q  13 acatcaagtttgttattggtgtgattttcatagaattcgcaaca 56  Q
    ||||||||||||||||| ||||||||||||| |||||| |||||    
T  42992756 acatcaagtttgttattagtgtgattttcatcgaattcacaaca 42992799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 51726889 - 51726847
Alignment:
Q  13 acatcaagtttgttattggtgtgattttcatagaattcgcaaca 56  Q
    |||||||||| |||||||||||||||||||| ||||||||||||    
T  51726889 acatcaagtt-gttattggtgtgattttcatcgaattcgcaaca 51726847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 1313777 - 1313822
Alignment:
Q  13 acatcaagtttgttattggtgtga--ttttcatagaattcgcaaca 56  Q
    ||||||||||||||||||||||||  ||||||| ||||||||||||    
T  1313777 acatcaagtttgttattggtgtgagtttttcatcgaattcgcaaca 1313822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 47701564 - 47701522
Alignment:
Q  13 acatcaagtttgttattggtgtga-ttttcatagaattcgcaa 54  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  47701564 acatcaagtttgttattggtgtgatttttcatcgaattcgcaa 47701522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 5192026 - 5192066
Alignment:
Q  13 acatcaagtttgttattggtgtgattttcatagaattcgcaa 54  Q
    |||||||||| |||||||||||||||||||| ||||||||||    
T  5192026 acatcaagtt-gttattggtgtgattttcatcgaattcgcaa 5192066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 10084271 - 10084228
Alignment:
Q  13 acatcaagtttgttattggtgtgattttcatagaattcgcaacag 57  Q
    |||||||||| |||||||||||||||||||| | |||||||||||    
T  10084271 acatcaagtt-gttattggtgtgattttcatcggattcgcaacag 10084228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 18096784 - 18096740
Alignment:
Q  13 acatcaagtttgttattggtgtga-ttttcatagaattcgcaaca 56  Q
    |||||||||||||||||||||| | ||||||| ||||||||||||    
T  18096784 acatcaagtttgttattggtgtaatttttcatcgaattcgcaaca 18096740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 18099054 - 18099010
Alignment:
Q  13 acatcaagtttgttattggtgtga-ttttcatagaattcgcaaca 56  Q
    |||||||||||||||||||||||| ||||||| |||||| |||||    
T  18099054 acatcaagtttgttattggtgtgatttttcatcgaattcccaaca 18099010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 41
Target Start/End: Complemental strand, 27635542 - 27635514
Alignment:
Q  13 acatcaagtttgttattggtgtgattttc 41  Q
    |||||||||||||||||||||||||||||    
T  27635542 acatcaagtttgttattggtgtgattttc 27635514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 43421304 - 43421260
Alignment:
Q  13 acatcaagtttgttattggtgtga-ttttcatagaattcgcaaca 56  Q
    ||||||| |||||||||||||||| ||||||| ||||||||||||    
T  43421304 acatcaactttgttattggtgtgatttttcatcgaattcgcaaca 43421260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 45883313 - 45883357
Alignment:
Q  13 acatcaagtttgttattggtgtga-ttttcatagaattcgcaaca 56  Q
    |||||||||||||||||||||||| ||||||| ||||| ||||||    
T  45883313 acatcaagtttgttattggtgtgatttttcatcgaatttgcaaca 45883357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 41
Target Start/End: Complemental strand, 51674653 - 51674625
Alignment:
Q  13 acatcaagtttgttattggtgtgattttc 41  Q
    |||||||||||||||||||||||||||||    
T  51674653 acatcaagtttgttattggtgtgattttc 51674625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 69176 - 69132
Alignment:
Q  13 acatcaagtttgttattggtgtgattttcatagaattcgcaacag 57  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||    
T  69176 acatcaagtttgttattggtgtgattttcatcgaattcacaacag 69132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 658247 - 658203
Alignment:
Q  13 acatcaagtttgttattggtgtgattttcatagaattcgcaacag 57  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||    
T  658247 acatcaaatttgttattggtgtgattttcatcgaattcgcaacag 658203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 10587209 - 10587252
Alignment:
Q  13 acatcaagtttgttattggtgtgattttcatagaattcgcaaca 56  Q
    ||||||||||||||||||||||||||||||| |||||| |||||    
T  10587209 acatcaagtttgttattggtgtgattttcatcgaattcacaaca 10587252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 21684336 - 21684293
Alignment:
Q  13 acatcaagtttgttattggtgtgattttcatagaattcgcaacag 57  Q
    |||||||||| |||||||||||||||||||| |||||||||||||    
T  21684336 acatcaagtt-gttattggtgtgattttcatcgaattcgcaacag 21684293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 36402214 - 36402170
Alignment:
Q  13 acatcaagtttgttattggtgtga-ttttcatagaattcgcaaca 56  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||    
T  36402214 acatcaagtttgttattggtgtgatttttcatcgaattcgcaaca 36402170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 38882483 - 38882526
Alignment:
Q  13 acatcaagtttgttattggtgtgattttcatagaattcgcaacag 57  Q
    |||||||||| |||||||||||||||||||| |||||||||||||    
T  38882483 acatcaagtt-gttattggtgtgattttcatcgaattcgcaacag 38882526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 34476936 - 34476894
Alignment:
Q  13 acatcaagtttgttattggtgtgattttcatagaattcgcaaca 56  Q
    |||||||||| |||||||||||||||||||| ||||||||||||    
T  34476936 acatcaagtt-gttattggtgtgattttcatcgaattcgcaaca 34476894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 6745463 - 6745507
Alignment:
Q  13 acatcaagtttgttattggtgtgattt-tcatagaattcgcaaca 56  Q
    ||||||||||||||||||||||| ||| |||| ||||||||||||    
T  6745463 acatcaagtttgttattggtgtgttttctcatcgaattcgcaaca 6745507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 18511100 - 18511056
Alignment:
Q  13 acatcaagtttgttattggtgtgattt-tcatagaattcgcaaca 56  Q
    |||||||||||||||||| |||||||| |||| ||||||||||||    
T  18511100 acatcaagtttgttattgatgtgatttatcatcgaattcgcaaca 18511056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 18597035 - 18597079
Alignment:
Q  13 acatcaagtttgttattggtgtga-ttttcatagaattcgcaaca 56  Q
    |||||||||||||||||||||||| ||||||| ||||| ||||||    
T  18597035 acatcaagtttgttattggtgtgatttttcatcgaatttgcaaca 18597079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 34530603 - 34530559
Alignment:
Q  13 acatcaagtttgttattggtgtga-ttttcatagaattcgcaaca 56  Q
    |||||||||||||||||||||||| ||||||| |||||| |||||    
T  34530603 acatcaagtttgttattggtgtgatttttcatcgaattcacaaca 34530559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 41585624 - 41585580
Alignment:
Q  13 acatcaagtttgttattggtgtga-ttttcatagaattcgcaaca 56  Q
    |||||||||||||||||||||||| ||||||| |||||| |||||    
T  41585624 acatcaagtttgttattggtgtgatttttcatcgaattcacaaca 41585580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 18839978 - 18840029
Alignment:
Q  13 acatcaagtttgttattggtgtga-ttttcatagaattcgcaacaggaatta 63  Q
    |||||||||||||||||||||||| ||||||| |||||||||||| ||||||    
T  18839978 acatcaagtttgttattggtgtgatttttcatcgaattcgcaacaagaatta 18840029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 6995584 - 6995540
Alignment:
Q  13 acatcaagtttgttattggtgtga-ttttcatagaattcgcaaca 56  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||    
T  6995584 acatcaagtttgttattggtgtgatttttcatcgaattcgcaaca 6995540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 20302836 - 20302879
Alignment:
Q  12 gacatcaagtttgttattggtgtgattttcatagaattcgcaaca 56  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||    
T  20302836 gacatcaagtt-gttattggtgtgattttcatcgaattcgcaaca 20302879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 31424906 - 31424862
Alignment:
Q  13 acatcaagtttgttattggtgtga-ttttcatagaattcgcaaca 56  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||    
T  31424906 acatcaagtttgttattggtgtgatttttcattgaattcgcaaca 31424862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 39462912 - 39462956
Alignment:
Q  13 acatcaagtttgttattggtgtga-ttttcatagaattcgcaaca 56  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||    
T  39462912 acatcaagtttgttattggtgtgatttttcatcgaattcgcaaca 39462956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 3579474 - 3579431
Alignment:
Q  13 acatcaagtttgttattggtgtgattttcatagaattcgcaaca 56  Q
    ||||||||||||||||||||||| ||||||| |||||| |||||    
T  3579474 acatcaagtttgttattggtgtgtttttcatcgaattcacaaca 3579431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 13358969 - 13359011
Alignment:
Q  13 acatcaagtttgttattggtgtgattttcatagaattcgcaaca 56  Q
    |||||||||| |||||||||||||||||||| ||||||||||||    
T  13358969 acatcaagtt-gttattggtgtgattttcatcgaattcgcaaca 13359011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 13447159 - 13447117
Alignment:
Q  13 acatcaagtttgttattggtgtgattttcatagaattcgcaaca 56  Q
    |||||||||| |||||||||||||||||||| ||||||||||||    
T  13447159 acatcaagtt-gttattggtgtgattttcatcgaattcgcaaca 13447117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 20291852 - 20291894
Alignment:
Q  13 acatcaagtttgttattggtgtgattttcatagaattcgcaaca 56  Q
    |||||||||| |||||||||||||||||||| ||||||||||||    
T  20291852 acatcaagtt-gttattggtgtgattttcatcgaattcgcaaca 20291894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 30780438 - 30780485
Alignment:
Q  13 acatcaagtttgttattggtgtga-ttttcatagaattcgcaacagga 59  Q
    |||||||||||||||||||||||| ||||||| |||||| ||||||||    
T  30780438 acatcaagtttgttattggtgtgagttttcatcgaattcacaacagga 30780485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 4131266 - 4131221
Alignment:
Q  13 acatcaagtttgttattggtgtga--ttttcatagaattcgcaaca 56  Q
    ||||||||||||||||||||||||  ||||||| ||||||||||||    
T  4131266 acatcaagtttgttattggtgtgagtttttcatcgaattcgcaaca 4131221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 50078680 - 50078635
Alignment:
Q  13 acatcaagtttgttattggtgtgattt--tcatagaattcgcaaca 56  Q
    |||||||||||||||||||||||||||  |||| ||||||||||||    
T  50078680 acatcaagtttgttattggtgtgattttctcatcgaattcgcaaca 50078635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 39932470 - 39932515
Alignment:
Q  13 acatcaagtttgttattggtgtga-ttttcatagaattcgcaacag 57  Q
    |||||||||||||||||||||||| ||||||| |||||| ||||||    
T  39932470 acatcaagtttgttattggtgtgatttttcatcgaattcacaacag 39932515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 2949123 - 2949079
Alignment:
Q  13 acatcaagtttgttattggtgtga-ttttcatagaattcgcaaca 56  Q
    |||||||||||||||||||||||| ||||||| |||||| |||||    
T  2949123 acatcaagtttgttattggtgtgatttttcatcgaattcacaaca 2949079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 15294720 - 15294677
Alignment:
Q  13 acatcaagtttgttattggtgtgattttcatagaattcgcaacag 57  Q
    |||||||||| |||||||||||||||||||| ||| |||||||||    
T  15294720 acatcaagtt-gttattggtgtgattttcatcgaaatcgcaacag 15294677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 16429343 - 16429387
Alignment:
Q  13 acatcaagtttgttattggtgtga-ttttcatagaattcgcaaca 56  Q
    |||||||||||||||||||||||| ||||||| |||||| |||||    
T  16429343 acatcaagtttgttattggtgtgatttttcatcgaattcacaaca 16429387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 31422750 - 31422706
Alignment:
Q  13 acatcaagtttgttattggtgtga-ttttcatagaattcgcaaca 56  Q
    |||||||||||||||||| ||||| ||||||| ||||||||||||    
T  31422750 acatcaagtttgttattgatgtgatttttcatcgaattcgcaaca 31422706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 29574 - 29617
Alignment:
Q  13 acatcaagtttgttattggtgtgattttcatagaattcgcaacag 57  Q
    |||||||||| |||||||||||||||||||| |||||||||||||    
T  29574 acatcaagtt-gttattggtgtgattttcatcgaattcgcaacag 29617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 79587 - 79631
Alignment:
Q  13 acatcaagtttgttattggtgtga-ttttcatagaattcgcaaca 56  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||    
T  79587 acatcaagtttgttattggtgtgatttttcattgaattcgcaaca 79631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 50413 - 50457
Alignment:
Q  13 acatcaagtttgttattggtgtga-ttttcatagaattcgcaaca 56  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||    
T  50413 acatcaagtttgttattggtgtgatttttcatcgaattcgcaaca 50457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 52412 - 52456
Alignment:
Q  13 acatcaagtttgttattggtgtga-ttttcatagaattcgcaaca 56  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||    
T  52412 acatcaagtttgttattggtgtgatttttcatcgaattcgcaaca 52456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 9020354 - 9020398
Alignment:
Q  13 acatcaagtttgttattggtgtga-ttttcatagaattcgcaaca 56  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||    
T  9020354 acatcaagtttgttattggtgtgatttttcatcgaattcgcaaca 9020398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 13057615 - 13057659
Alignment:
Q  13 acatcaagtttgttattggtgtga-ttttcatagaattcgcaaca 56  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||    
T  13057615 acatcaagtttgttattggtgtgatttttcatcgaattcgcaaca 13057659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 2628769 - 2628727
Alignment:
Q  13 acatcaagtttgttattggtgtgattttcatagaattcgcaaca 56  Q
    |||||||||| |||||||||||||||||||| ||||||||||||    
T  2628769 acatcaagtt-gttattggtgtgattttcatcgaattcgcaaca 2628727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 30034489 - 30034447
Alignment:
Q  13 acatcaagtttgttattggtgtgattttcatagaattcgcaaca 56  Q
    |||||||||| |||||||||||||||||||| ||||||||||||    
T  30034489 acatcaagtt-gttattggtgtgattttcatcgaattcgcaaca 30034447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 13040188 - 13040232
Alignment:
Q  13 acatcaagtttgttattggtgtga-ttttcatagaattcgcaaca 56  Q
    ||||||||||||||||| |||||| ||||||| ||||||||||||    
T  13040188 acatcaagtttgttattagtgtgatttttcatcgaattcgcaaca 13040232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 15367454 - 15367498
Alignment:
Q  13 acatcaagtttgttattggtgtga-ttttcatagaattcgcaaca 56  Q
    |||||||||||||||||||||||| ||||||| |||||| |||||    
T  15367454 acatcaagtttgttattggtgtgatttttcatcgaattcacaaca 15367498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 18322523 - 18322566
Alignment:
Q  13 acatcaagtttgttattggtgtgatttt-catagaattcgcaaca 56  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||    
T  18322523 acatcaagtt-gttattggtgtgatttttcatagaattcgcaaca 18322566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 22611095 - 22611139
Alignment:
Q  13 acatcaagtttgttattggtgtgattttcatagaattcgcaacag 57  Q
    ||||||||| | ||||||||||||||||||| ||| |||||||||    
T  22611095 acatcaagtattttattggtgtgattttcatcgaactcgcaacag 22611139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 33311556 - 33311599
Alignment:
Q  13 acatcaagtttgttattggtgtgattttcatagaattcgcaacag 57  Q
    |||||||||| |||||||||||||||||||| |||||| ||||||    
T  33311556 acatcaagtt-gttattggtgtgattttcatcgaattcacaacag 33311599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 19501885 - 19501843
Alignment:
Q  13 acatcaagtttgttattggtgtgattttcatagaattcgcaaca 56  Q
    |||||||||| |||||||||||||||||||| ||||||||||||    
T  19501885 acatcaagtt-gttattggtgtgattttcatcgaattcgcaaca 19501843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 17849483 - 17849531
Alignment:
Q  13 acatcaagtttgttattggtgtga--ttttcatagaattcgcaacagga 59  Q
    ||||||||||||||||||||||||  ||||||| |||||| ||||||||    
T  17849483 acatcaagtttgttattggtgtgattttttcatcgaattcacaacagga 17849531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 27105168 - 27105209
Alignment:
Q  13 acatcaagtttgttattggtgtga-ttttcatagaattcgca 53  Q
    |||||||||||||||||||||||| ||||||| |||||||||    
T  27105168 acatcaagtttgttattggtgtgatttttcatcgaattcgca 27105209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 28459081 - 28459036
Alignment:
Q  13 acatcaagtttgttattggtgtgattttcatagaattcgcaacagg 58  Q
    ||||||||| | ||||||||||||||||||| |||||| |||||||    
T  28459081 acatcaagtgttttattggtgtgattttcatcgaattcacaacagg 28459036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 11739465 - 11739421
Alignment:
Q  13 acatcaagtttgttattggtgtga-ttttcatagaattcgcaaca 56  Q
    |||||||||||||||||||||||| ||||||| |||||| |||||    
T  11739465 acatcaagtttgttattggtgtgatttttcatcgaattcacaaca 11739421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 21520578 - 21520534
Alignment:
Q  13 acatcaagtttgttattggtgtgattt-tcatagaattcgcaaca 56  Q
    ||||||||||||||||||||||| ||| |||| ||||||||||||    
T  21520578 acatcaagtttgttattggtgtgttttctcatcgaattcgcaaca 21520534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 43623467 - 43623423
Alignment:
Q  13 acatcaagtttgttattggtgtga-ttttcatagaattcgcaaca 56  Q
    |||||||||| ||||||||||||| ||||||| ||||||||||||    
T  43623467 acatcaagttagttattggtgtgatttttcatcgaattcgcaaca 43623423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 45238886 - 45238842
Alignment:
Q  13 acatcaagtttgttattggtgtga-ttttcatagaattcgcaaca 56  Q
    ||||||||||| |||||||||||| ||||||| ||||||||||||    
T  45238886 acatcaagtttattattggtgtgatttttcatcgaattcgcaaca 45238842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 80261 - 80305
Alignment:
Q  13 acatcaagtttgttattggtgtgattt-tcatagaattcgcaaca 56  Q
    ||||||||||||||||||||||| ||| |||| ||||||||||||    
T  80261 acatcaagtttgttattggtgtgttttctcatcgaattcgcaaca 80305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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