View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2811_2D_low_6 (Length: 416)
Name: NF2811_2D_low_6
Description: NF2811_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2811_2D_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 17 - 285
Target Start/End: Complemental strand, 44693967 - 44693695
Alignment:
| Q |
17 |
aaaaagaaccctgaaatgcaagcaaaccttcagattctgagggacaaaattgtgtactctcctctcgatatttttatttatttagcaagcatttttcttt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
44693967 |
aaaaagaaccctgaaatgcaagcaaaccttcagattctgagggacaaaattgtgtactctcctctcgatatttttatttgcttagcaagcatttttcttt |
44693868 |
T |
|
| Q |
117 |
tgtgcaaaaacgtgaggtacaaaaccatataacatactgaagcagggttacactactaaactcacaaacctaacccatcagagaac----gagtattcaa |
212 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
44693867 |
tgtgcaaaaatgtgaggtacaaaaccatataacatactgaagcagggttacactactaaactcacaaacctaacccatcagagaacaagtgagtattcaa |
44693768 |
T |
|
| Q |
213 |
acactacagttgaagtgttatgttcactcttgtatctccaaacttcaccttattgtggtcaatagctgttgct |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44693767 |
acactacagttgaagtgttatgttcactcttgtatctccaaacttcaccttattgtggtcaatagctgttgct |
44693695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 283 - 397
Target Start/End: Complemental strand, 44625638 - 44625524
Alignment:
| Q |
283 |
gctacatcacgaacagcactaggtccatgtggaatgaacacagcagaagacttggaggcagcaccaatttctttcatagtgtcaaagtattgagtgacaa |
382 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44625638 |
gctacatcacgaacagcaccaggtccatgtggaatgaacacagcagaagacttggaggcagcaccaatttctttcatagtgtcaaagtattgagtgacaa |
44625539 |
T |
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| Q |
383 |
ggaccatatccatga |
397 |
Q |
| |
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||||||||||||||| |
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| T |
44625538 |
ggaccatatccatga |
44625524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 283 - 397
Target Start/End: Complemental strand, 44654793 - 44654679
Alignment:
| Q |
283 |
gctacatcacgaacagcactaggtccatgtggaatgaacacagcagaagacttggaggcagcaccaatttctttcatagtgtcaaagtattgagtgacaa |
382 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44654793 |
gctacatcacgaacagcaccaggtccatgtggaatgaacacagcagaagacttggaggcagcaccaatttctttcatagtgtcaaagtattgagtgacaa |
44654694 |
T |
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| Q |
383 |
ggaccatatccatga |
397 |
Q |
| |
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||||||||||||||| |
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| T |
44654693 |
ggaccatatccatga |
44654679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 283 - 397
Target Start/End: Complemental strand, 44693324 - 44693210
Alignment:
| Q |
283 |
gctacatcacgaacagcactaggtccatgtggaatgaacacagcagaagacttggaggcagcaccaatttctttcatagtgtcaaagtattgagtgacaa |
382 |
Q |
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|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44693324 |
gctacatcacgaacagcaccaggtccatgtggaatgaacacagcagaagacttggaggcagcaccaatttctttcatagtgtcaaagtattgagtgacaa |
44693225 |
T |
|
| Q |
383 |
ggaccatatccatga |
397 |
Q |
| |
|
||||||||||||||| |
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| T |
44693224 |
ggaccatatccatga |
44693210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 283 - 397
Target Start/End: Complemental strand, 44683592 - 44683478
Alignment:
| Q |
283 |
gctacatcacgaacagcactaggtccatgtggaatgaacacagcagaagacttggaggcagcaccaatttctttcatagtgtcaaagtattgagtgacaa |
382 |
Q |
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|
||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
44683592 |
gctacatcacgaacagcgccaggtccgtgtggaatgaacacagcagaagacttggaggcagccccaatttctttcatagtgtcaaagtattgagtgacaa |
44683493 |
T |
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| Q |
383 |
ggaccatatccatga |
397 |
Q |
| |
|
||||||||||||||| |
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| T |
44683492 |
ggaccatatccatga |
44683478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 284 - 397
Target Start/End: Original strand, 44635916 - 44636029
Alignment:
| Q |
284 |
ctacatcacgaacagcactaggtccatgtggaatgaacacagcagaagacttggaggcagcaccaatttctttcatagtgtcaaagtattgagtgacaag |
383 |
Q |
| |
|
||||||| |||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44635916 |
ctacatcgcgaacagcaccaggtccgtgtggaatgaacacagcagaagatttggaggcagcaccaatttctttcatagtgtcaaagtattgagtgacaag |
44636015 |
T |
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| Q |
384 |
gaccatatccatga |
397 |
Q |
| |
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||||| |||||||| |
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| T |
44636016 |
gaccaaatccatga |
44636029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 286 - 397
Target Start/End: Complemental strand, 44632924 - 44632813
Alignment:
| Q |
286 |
acatcacgaacagcactaggtccatgtggaatgaacacagcagaagacttggaggcagcaccaatttctttcatagtgtcaaagtattgagtgacaagga |
385 |
Q |
| |
|
||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
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| T |
44632924 |
acatcgcgaacagcgccaggtccatgtggaatgaacacagcagaagacttggaggcagccccaatttctttcaaagtgtcaaagtattgagtgacaagga |
44632825 |
T |
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| Q |
386 |
ccatatccatga |
397 |
Q |
| |
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|||||||||||| |
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| T |
44632824 |
ccatatccatga |
44632813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 44633928 - 44633877
Alignment:
| Q |
17 |
aaaaagaaccctgaaatgcaagcaaaccttcagattctgagggacaaaattgt |
69 |
Q |
| |
|
||||||||| ||| |||||||||||||||||| |||| ||||||||||||||| |
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| T |
44633928 |
aaaaagaacactggaatgcaagcaaaccttcatattc-gagggacaaaattgt |
44633877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 44693636 - 44693604
Alignment:
| Q |
17 |
aaaaagaaccctgaaatgcaagcaaaccttcag |
49 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
44693636 |
aaaaagaaccctgaaatgcaagcaaaccttcag |
44693604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 203 - 273
Target Start/End: Complemental strand, 5013623 - 5013552
Alignment:
| Q |
203 |
gagtattcaaacacta-cagttgaagtgttatgttcactcttgtatctccaaacttcaccttattgtggtca |
273 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||| |||||||| | || |||||| |||||| |
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| T |
5013623 |
gagtattcaaacactaacagttgaagtgttatgttcactcttgtgtctccaaattccatcttattctggtca |
5013552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 377
Target Start/End: Complemental strand, 3205311 - 3205229
Alignment:
| Q |
295 |
acagcactaggtccatgtggaatgaacacagcagaagacttggaggcagcaccaatttctttcatagtgtcaaagtattgagt |
377 |
Q |
| |
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||||||| ||| ||||||||||||||||||| || || || |||| ||||||||||| ||||| ||||| ||||||||||| |
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|
| T |
3205311 |
acagcaccaggaccatgtggaatgaacacagatgacgattttgaggatgcaccaatttccttcatggtgtcgaagtattgagt |
3205229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 240
Target Start/End: Complemental strand, 5555838 - 5555805
Alignment:
| Q |
207 |
attcaaacactacagttgaagtgttatgttcact |
240 |
Q |
| |
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|||||||||| ||||||||||||||||||||||| |
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| T |
5555838 |
attcaaacacaacagttgaagtgttatgttcact |
5555805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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