View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2811_2D_low_9 (Length: 388)
Name: NF2811_2D_low_9
Description: NF2811_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2811_2D_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 163; Significance: 6e-87; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 174 - 348
Target Start/End: Complemental strand, 9575135 - 9574961
Alignment:
| Q |
174 |
gtaagctcggtgaaactgccactatttccagacatactcaaaatttactgcacactactaaagcaagaattcttaagcagttctagtatgcttaccgtgt |
273 |
Q |
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| T |
9575135 |
gtaagctcggtgaaactgacactatttccagacatactcaaaatttactgcacactactaaagcaagaattcttaagcagttctagcatgcttacggtgt |
9575036 |
T |
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| Q |
274 |
cggacaacaaaattgttgtccaaataacatttatgtggctattttagaagtttgttggtacaagtgaaatccctt |
348 |
Q |
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| T |
9575035 |
cggacaacaaaattgttgtccaaataacatttatgtggctattttagaagtttgttggtacaagtgaaatccctt |
9574961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 9575308 - 9575239
Alignment:
| Q |
1 |
agatgttgttgtccgataatggtttattttgaggaaagccttttaccgattgaaggaataaacagttaag |
70 |
Q |
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| T |
9575308 |
agatgttattgtccgataatggtttattttgaggaaagcgttttaccgattgaaggaataaacagttaag |
9575239 |
T |
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