View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2812_high_1 (Length: 465)

Name: NF2812_high_1
Description: NF2812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2812_high_1
NF2812_high_1
[»] chr7 (6 HSPs)
chr7 (26-454)||(44115034-44115462)
chr7 (78-454)||(26001659-26002035)
chr7 (339-412)||(14231474-14231547)
chr7 (352-412)||(1264212-1264272)
chr7 (308-412)||(21712915-21713019)
chr7 (308-412)||(26907218-26907322)
[»] chr3 (5 HSPs)
chr3 (78-454)||(21037527-21037903)
chr3 (223-454)||(38894879-38895111)
chr3 (312-415)||(36155022-36155125)
chr3 (352-412)||(17688950-17689010)
chr3 (352-412)||(31687155-31687215)
[»] chr1 (2 HSPs)
chr1 (355-457)||(19252415-19252517)
chr1 (308-412)||(25226214-25226318)
[»] chr5 (1 HSPs)
chr5 (308-412)||(30443346-30443450)
[»] chr8 (1 HSPs)
chr8 (339-412)||(8163401-8163474)


Alignment Details
Target: chr7 (Bit Score: 381; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 26 - 454
Target Start/End: Original strand, 44115034 - 44115462
Alignment:
Q  26 gatctcattgatcgtttcaaggttttgcacaatgatctgattgaaaccgaacatgagacttttacatggttgttgaagtaatgatgtcaatgaattaaga 125  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||| ||    
T  44115034 gatctgattgatcgtttcaaggttttgcacaatgatctgattgaaaccgaacatgagacttttacatggctgttcaagtaatgatgtcgatgaattagga 44115133  T
Q  126 aaatttggttaatgggttttgtgtattggtgatggtgttgttggggatgtatgtgatgatgaaattaatgtacgtatccccgacgatttgcttattcgta 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  44115134 aaatttggttaatgggttttgtgtattggtgatggtgttgttggggatacatgtgatgatgaaattaatgcacgtatccccgacgatttgcttattcgta 44115233  T
Q  226 gttcaggtgatcatgttgcgtcaattgcagagtgaatttacccttctattttgcataatattaatgatctagaatttttcagagatagagcaattttgac 325  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  44115234 gttcaggtgatcatgttgcgtcaattgtagagtgaatttacccttctattttgcataatattaatgatctataatttttcagagatagagcaattttgac 44115333  T
Q  326 gcctaagaatgtgattgtggatgagattaataattatgttatgtctttgatacctggtgaagaaaggatatatttgagttgtgattcaccttgccccagt 425  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  44115334 gcctaagaatgtgattgtggatgagattaataattatgttatgtctttgatacctggtgaagaaaggatatatttgagttgtgattcaccttgtcccagt 44115433  T
Q  426 agtactgttgccaataggcctgatgatgt 454  Q
    |||| ||||||||||||||||||||||||    
T  44115434 agtattgttgccaataggcctgatgatgt 44115462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 78 - 454
Target Start/End: Original strand, 26001659 - 26002035
Alignment:
Q  78 atgagacttttacatggttgttgaagtaatgatgtcaatgaattaagaaaatttggttaatgggttttgtgtattggtgatggtgttgttggggatgtat 177  Q
    ||||||||||| || ||||||| || |  ||||||| |||||||||||||||||||  ||||||| ||| | |||||||||||||||||||| |||||||    
T  26001659 atgagacttttgcacggttgttcaactgctgatgtcgatgaattaagaaaatttggagaatgggtattgggcattggtgatggtgttgttggagatgtat 26001758  T
Q  178 gtgatgatgaaattaatgtacgtatccccgacgatttgcttattcgtagttcaggtgatcatgttgcgtcaattgcagagtgaatttacccttctatttt 277  Q
    ||||||||| ||||||||||| ||||||||||||  |||||||  |||||||||||||||||||||| || |||| |||||| |||||||||||||||||    
T  26001759 gtgatgatggaattaatgtacatatccccgacgacctgcttatctgtagttcaggtgatcatgttgcatctattgtagagtgcatttacccttctatttt 26001858  T
Q  278 gcataatattaatgatctagaatttttcagagatagagcaattttgacgcctaagaatgtgattgtggatgagattaataattatgttatgtctttgata 377  Q
    ||| ||||| ||||||| ||| ||||| ||||||||||| |||||||||||||||||| ||||||| || || ||||| |||||||||||||||||||||    
T  26001859 gcaaaatatgaatgatccagagttttttagagatagagctattttgacgcctaagaatttgattgtcgacgaaattaacaattatgttatgtctttgata 26001958  T
Q  378 cctggtgaagaaaggatatatttgagttgtgattcaccttgccccagtagtactgttgccaataggcctgatgatgt 454  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||    
T  26001959 cctggtgaagaaaggacatatttgagttgtgattcaccttgccccagtagtattgttgctaacaggcctgatgatgt 26002035  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 339 - 412
Target Start/End: Original strand, 14231474 - 14231547
Alignment:
Q  339 attgtggatgagattaataattatgttatgtctttgatacctggtgaagaaaggatatatttgagttgtgattc 412  Q
    ||||| |||||| ||||||| |||||| ||||| | || || || |||||||||| ||||||||||||||||||    
T  14231474 attgttgatgaggttaataactatgttctgtctctcattcccggcgaagaaaggacatatttgagttgtgattc 14231547  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 352 - 412
Target Start/End: Original strand, 1264212 - 1264272
Alignment:
Q  352 ttaataattatgttatgtctttgatacctggtgaagaaaggatatatttgagttgtgattc 412  Q
    ||||||| |||||||||||| | || || || |||||||||| ||||||||||||||||||    
T  1264212 ttaataactatgttatgtctctcattcccggcgaagaaaggacatatttgagttgtgattc 1264272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 308 - 412
Target Start/End: Original strand, 21712915 - 21713019
Alignment:
Q  308 agatagagcaattttgacgcctaagaatgtgattgtggatgagattaataattatgttatgtctttgatacctggtgaagaaaggatatatttgagttgt 407  Q
    ||||||||  |||||||| ||||| | ||| | ||| |||||||||||| |||||  | ||||| | || | ||||||||||| || |||||||||||||    
T  21712915 agatagagttattttgacacctaaaattgtcactgttgatgagattaatgattataatttgtctctcattcttggtgaagaaaagacatatttgagttgt 21713014  T
Q  408 gattc 412  Q
    |||||    
T  21713015 gattc 21713019  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 308 - 412
Target Start/End: Complemental strand, 26907322 - 26907218
Alignment:
Q  308 agatagagcaattttgacgcctaagaatgtgattgtggatgagattaataattatgttatgtctttgatacctggtgaagaaaggatatatttgagttgt 407  Q
    ||||| |||||| ||||| ||||| |||   ||| | |||||| ||||||| |||||| ||||| | || || || |||||||||| |||||||||||||    
T  26907322 agataaagcaatattgactcctaaaaatacaatttttgatgaggttaataactatgttctgtctctcattcccggcgaagaaaggacatatttgagttgt 26907223  T
Q  408 gattc 412  Q
    |||||    
T  26907222 gattc 26907218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 233; Significance: 1e-128; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 78 - 454
Target Start/End: Complemental strand, 21037903 - 21037527
Alignment:
Q  78 atgagacttttacatggttgttgaagtaatgatgtcaatgaattaagaaaatttggttaatgggttttgtgtattggtgatggtgttgttggggatgtat 177  Q
    ||||||| ||| || ||||||| ||||  ||||||| ||||||| |||||||||||  ||||||| ||| ||||||||||||| |||||||| |||||||    
T  21037903 atgagacatttgcacggttgttcaagtgctgatgtcgatgaattgagaaaatttggagaatgggtattgggtattggtgatggggttgttggagatgtat 21037804  T
Q  178 gtgatgatgaaattaatgtacgtatccccgacgatttgcttattcgtagttcaggtgatcatgttgcgtcaattgcagagtgaatttacccttctatttt 277  Q
    ||||||||| ||||||||||| ||||||||||||  ||||||| ||||||||||||||||||||||| || |||| |||||| |||||||||||||||||    
T  21037803 gtgatgatggaattaatgtacatatccccgacgacctgcttatccgtagttcaggtgatcatgttgcatctattgtagagtgcatttacccttctatttt 21037704  T
Q  278 gcataatattaatgatctagaatttttcagagatagagcaattttgacgcctaagaatgtgattgtggatgagattaataattatgttatgtctttgata 377  Q
    ||||||||| ||||||||||| ||||| ||||||||||| |||||||||||||||||| |||||||  | || ||||| |||||||||||||||||||||    
T  21037703 gcataatatgaatgatctagagttttttagagatagagctattttgacgcctaagaatttgattgtcaacgaaattaacaattatgttatgtctttgata 21037604  T
Q  378 cctggtgaagaaaggatatatttgagttgtgattcaccttgccccagtagtactgttgccaataggcctgatgatgt 454  Q
    || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  21037603 cccggtgaagaaaggacatatttgagttgtgattcaccttgccccagtagtactgttgctaataggcctgatgatgt 21037527  T

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Target: chr3; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 223 - 454
Target Start/End: Complemental strand, 38895111 - 38894879
Alignment:
Q  223 gtagttcaggtgatcatgttgcgtcaattgcagagtgaatttacccttctattttgcataatattaatgatctagaatttttc-agagatagagcaattt 321  Q
    |||||||| ||||||||||||| || |||| |||||| |||||||||||||||||||||||||| ||||||  ||| |||||  ||||||||||| ||||    
T  38895111 gtagttcaagtgatcatgttgcatctattgtagagtgcatttacccttctattttgcataatatgaatgattcagagtttttttagagatagagctattt 38895012  T
Q  322 tgacgcctaagaatgtgattgtggatgagattaataattatgttatgtctttgatacctggtgaagaaaggatatatttgagttgtgattcaccttgccc 421  Q
    |||||||||||||| ||||||| || || ||||| ||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||    
T  38895011 tgacgcctaagaatttgattgtcgacgaaattaacaattatgttatgtctttgatacccggtgaagagaggacatatttgagttgtgattcaccttgccc 38894912  T
Q  422 cagtagtactgttgccaataggcctgatgatgt 454  Q
    || ||||| |||||| |||||||||||||||||    
T  38894911 cattagtattgttgctaataggcctgatgatgt 38894879  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 415
Target Start/End: Original strand, 36155022 - 36155125
Alignment:
Q  312 agagcaattttgacgcctaagaatgtgattgtggatgagattaataattatgttatgtctttgatacctggtgaagaaaggatatatttgagttgtgatt 411  Q
    ||||| || ||||| || || ||||| ||||| || || |||||| ||||| |  |||||||| | | ||||||||||| ||||||| ||||||||||||    
T  36155022 agagccatattgacacccaaaaatgtcattgttgaggaaattaatgattatatgttgtctttggtccatggtgaagaaaagatatatctgagttgtgatt 36155121  T
Q  412 cacc 415  Q
    ||||    
T  36155122 cacc 36155125  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 412
Target Start/End: Original strand, 17688950 - 17689010
Alignment:
Q  352 ttaataattatgttatgtctttgatacctggtgaagaaaggatatatttgagttgtgattc 412  Q
    ||||||| |||||| ||||| | ||  |||| |||||||||| ||||||||||||||||||    
T  17688950 ttaataactatgttctgtctctcatttctggcgaagaaaggacatatttgagttgtgattc 17689010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 412
Target Start/End: Original strand, 31687155 - 31687215
Alignment:
Q  352 ttaataattatgttatgtctttgatacctggtgaagaaaggatatatttgagttgtgattc 412  Q
    ||||||| |||||| ||||| | || || || |||||||||| ||||||||||||||||||    
T  31687155 ttaataactatgttctgtctctcattcccggcgaagaaaggacatatttgagttgtgattc 31687215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 355 - 457
Target Start/End: Complemental strand, 19252517 - 19252415
Alignment:
Q  355 ataattatgttatgtctttgatacctggtgaagaaaggatatatttgagttgtgattcaccttgccccagtagtactgttgccaataggcctgatgatgt 454  Q
    ||||||||||||||||| |||||||||| ||||||| | | ||||||||||||||| || ||||||| || || |||||||| ||||| |||||||||||    
T  19252517 ataattatgttatgtctatgatacctggcgaagaaaaggtgtatttgagttgtgatacatcttgcccgagcagcactgttgcaaatagacctgatgatgt 19252418  T
Q  455 cca 457  Q
    |||    
T  19252417 cca 19252415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 308 - 412
Target Start/End: Original strand, 25226214 - 25226318
Alignment:
Q  308 agatagagcaattttgacgcctaagaatgtgattgtggatgagattaataattatgttatgtctttgatacctggtgaagaaaggatatatttgagttgt 407  Q
    ||||| |||||| ||||| ||||| |||   ||| | |||||| ||||||| |||||| ||||| | || || ||||||||||||| ||||||||||| |    
T  25226214 agataaagcaatattgactcctaaaaatacaatttttgatgaggttaataactatgttctgtctctcattcccggtgaagaaaggacatatttgagttat 25226313  T
Q  408 gattc 412  Q
    |||||    
T  25226314 gattc 25226318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 308 - 412
Target Start/End: Complemental strand, 30443450 - 30443346
Alignment:
Q  308 agatagagcaattttgacgcctaagaatgtgattgtggatgagattaataattatgttatgtctttgatacctggtgaagaaaggatatatttgagttgt 407  Q
    ||||| |||||| ||||| ||||| |||   ||||| |||||| ||||||| |||||| ||||| | || || || |||||||||| |||||||||||||    
T  30443450 agataaagcaatattgactcctaaaaatacaattgttgatgaggttaataactatgttttgtctctcattcccggcgaagaaaggacatatttgagttgt 30443351  T
Q  408 gattc 412  Q
    |||||    
T  30443350 gattc 30443346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 412
Target Start/End: Original strand, 8163401 - 8163474
Alignment:
Q  339 attgtggatgagattaataattatgttatgtctttgatacctggtgaagaaaggatatatttgagttgtgattc 412  Q
    ||||| |||||| ||||||| |||||| ||||| | ||  | || |||||||||| ||||||||||||||||||    
T  8163401 attgttgatgaggttaataactatgttctgtctctcatttccggcgaagaaaggacatatttgagttgtgattc 8163474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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