View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2812_high_2 (Length: 427)
Name: NF2812_high_2
Description: NF2812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2812_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 106 - 417
Target Start/End: Complemental strand, 2101806 - 2101494
Alignment:
| Q |
106 |
taataacactggttacaccaccaaaaactta-gacacataagattcaaatcgggtaaaagtgttcacacctaacatgtgtagtgtctaataagttagttc |
204 |
Q |
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| T |
2101806 |
taataacactggttacaccaccaaaaacttaagacacataagattcaaatcgggtaaaagtgt-cacacctaacatgtgtagtgtctaataaattagttc |
2101708 |
T |
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| Q |
205 |
aactaaagctacaaggttaaaattgagaatgaaaaatgataaaggttataaaaaa-tcatataagccggtaaatataaactataagctcatgaaaacgtg |
303 |
Q |
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| T |
2101707 |
aactaaagctacaaggttaaaattgagaatgaaaaatgataaaggttataaaaaaatcatataagcctgtaaatataaactataagctcgtgaaaacgtg |
2101608 |
T |
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| Q |
304 |
aaaattacaaaacaaaacttttttaaaagcttatgaaacataatccaaattttcggtttgccaaacagatcctaatcattcataaatgaagaagatgaac |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2101607 |
aaaattacaaaacaaaacttttttaaaagcttatgaaacataatccaaatttgcggtttgccaaacagatcctaatcattcataaatgaagaagatgaac |
2101508 |
T |
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| Q |
404 |
gattcacctctctg |
417 |
Q |
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| T |
2101507 |
gattcacctctctg |
2101494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 2102153 - 2102059
Alignment:
| Q |
18 |
aaaccttag-agttaaacatgacgggcaactccttatagaggatatcaatacattaggatgacatttgaagtgtaatgtagtgtataaataataa |
111 |
Q |
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| T |
2102153 |
aaaccttaggagttaaacatgatgggcaacgccttatagaggatatcaatacattaggatgacatttgaagtgtaatgtagtgtataaataataa |
2102059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 103; Significance: 4e-51; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 262 - 388
Target Start/End: Original strand, 39184928 - 39185054
Alignment:
| Q |
262 |
atataagccggtaaatataaactataagctcatgaaaacgtgaaaattacaaaacaaaacttttttaaaagcttatgaaacataatccaaattttcggtt |
361 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| |
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| T |
39184928 |
atataagccggtaaatataaactataagctcttgaaaacgtgaaaattacaaaacaaaactcttttaaaagcttataaaacataatccaaatttgcggtt |
39185027 |
T |
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| Q |
362 |
tgccaaacagatcctaatcattcataa |
388 |
Q |
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| T |
39185028 |
tgccaaacagatcctaaccattgataa |
39185054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 202 - 246
Target Start/End: Original strand, 39184848 - 39184892
Alignment:
| Q |
202 |
ttcaactaaagctacaaggttaaaattgagaatgaaaaatgataa |
246 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
39184848 |
ttcaattaaagctacaaggttaaaattgagaatgaaaaatgataa |
39184892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 106 - 145
Target Start/End: Original strand, 39184394 - 39184433
Alignment:
| Q |
106 |
taataacactggttacaccaccaaaaacttagacacataa |
145 |
Q |
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|||||||||| ||||||||||||||||||||||||||||| |
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| T |
39184394 |
taataacactagttacaccaccaaaaacttagacacataa |
39184433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 39183921 - 39183970
Alignment:
| Q |
18 |
aaaccttag-agttaaacatgacgggcaactccttatagaggatatcaat |
66 |
Q |
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||||||||| ||||||| | |||||||||| ||||||||||||||||||| |
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| T |
39183921 |
aaaccttaggagttaaatacgacgggcaacaccttatagaggatatcaat |
39183970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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