View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2812_low_3 (Length: 405)

Name: NF2812_low_3
Description: NF2812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2812_low_3
NF2812_low_3
[»] chr1 (2 HSPs)
chr1 (3-391)||(12507388-12507776)
chr1 (3-391)||(12492458-12492846)


Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 3 - 391
Target Start/End: Original strand, 12507388 - 12507776
Alignment:
Q  3 cacagagaactcgcaaacgagataagaaccattgtaaaaaacgaaggcggggtaacaattcagtcgttagaaaaaatgtcgttagttaaatccgttgttt 102  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  12507388 cacaaagaactcgcaaacgagataagaaccattgtaaaaaacgaaggcggggtaacaattcagtcgttagaaaaaatgtcattagttaaatccgttgttt 12507487  T
Q  103 atgaagttttgaggattgaacctgtcgttcgttatcaatatgcaaaagcaagagaagatttaattgtgaagagtcacgatgcagcttttgaaattaaaaa 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12507488 atgaagttttgaggattgaacctgtcgttcgttatcaatatgcaaaagcaagagaagatttaattgtgaagagtcacgatgcagcttttgaaattaaaaa 12507587  T
Q  203 gggtgagatgattttcgggtaccaatcttttgctactaaggaccctagggttttcgatgatgctgagatttttgtgccaaagaggtttattggagaaggt 302  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12507588 gggtgagatgattttcgggtaccaatcttttgctactaaggatcctagggttttcgatgatgctgagatttttgtgccaaagaggtttattggagaaggt 12507687  T
Q  303 gagaagttgttgaagtatgttttatggtcgaatgggagagaaactgagaagcctagtgtcgataataaacaatgtcctgcgaagaatct 391  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  12507688 gagaagttgttgaaatatgttttatggtcgaatgggagagaaactgagaaccctactgtcgataataaacaatgtcctgcgaagaatct 12507776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 3 - 391
Target Start/End: Original strand, 12492458 - 12492846
Alignment:
Q  3 cacagagaactcgcaaacgagataagaaccattgtaaaaaacgaaggcggggtaacaattcagtcgttagaaaaaatgtcgttagttaaatccgttgttt 102  Q
    |||| ||||||||||||||||||||||||| | |||||| | |||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||| |    
T  12492458 cacaaagaactcgcaaacgagataagaaccgtggtaaaacaagaaggcggagtaacaattcagtcgttagaaaaaatgccgttagttaaatcagttgtct 12492557  T
Q  103 atgaagttttgaggattgaacctgtcgttcgttatcaatatgcaaaagcaagagaagatttaattgtgaagagtcacgatgcagcttttgaaattaaaaa 202  Q
    ||||||   || | ||||||||||  || | ||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||| |||||    
T  12492558 atgaagcgatgcgaattgaacctgctgtgccttatcaatatgcaaaagcaagagaagatttaatcgtgaagagtcacgacgcggcttttgaaataaaaaa 12492657  T
Q  203 gggtgagatgattttcgggtaccaatcttttgctactaaggaccctagggttttcgatgatgctgagatttttgtgccaaagaggtttattggagaaggt 302  Q
    |||||||||||| || || |||||| |||| || || || || |||||||||||||||||| ||||| |||||||| | ||||||||| | || ||||||    
T  12492658 gggtgagatgatatttggataccaacctttcgcgacaaaagatcctagggttttcgatgatcctgaggtttttgtggcgaagaggtttgtcggcgaaggt 12492757  T
Q  303 gagaagttgttgaagtatgttttatggtcgaatgggagagaaactgagaagcctagtgtcgataataaacaatgtcctgcgaagaatct 391  Q
    |||||||| |||||||||||||| ||||| ||||||| |||||||||  |||||  ||| |  |||||||||||||||| |||||||||    
T  12492758 gagaagttattgaagtatgttttgtggtctaatgggaaagaaactgaagagccttctgtggggaataaacaatgtcctgggaagaatct 12492846  T

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