View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2812_low_4 (Length: 387)
Name: NF2812_low_4
Description: NF2812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2812_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 155; Significance: 3e-82; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 220 - 382
Target Start/End: Original strand, 16458417 - 16458579
Alignment:
| Q |
220 |
tctcttttttcaattttcgcagtgaagaaagtgagaggatagcacttatccaccattacagtcatgcctttaatggattcactgccatgcttacacaaag |
319 |
Q |
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| T |
16458417 |
tctcttttttcaattttcgcagtgaagaaagtgagaggatagcacttatccaccattatagtcatgcctttaatggattctctgccatgcttacacaaag |
16458516 |
T |
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| Q |
320 |
tgaagcttctgcattagctggtatttcatctttatttcagctatagcctatacctttgcttct |
382 |
Q |
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| T |
16458517 |
tgaagcttctgcattagctggtatttcatctttatttcagctatagcctatacctttgcttct |
16458579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 233 - 351
Target Start/End: Original strand, 16487348 - 16487466
Alignment:
| Q |
233 |
ttttcgcagtgaagaaagtgagaggatagcacttatccaccattacagtcatgcctttaatggattcactgccatgcttacacaaagtgaagcttctgca |
332 |
Q |
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| T |
16487348 |
ttttctcagtgaagaaagtgagaggataaaacttattcaccattacaatcatgcttttagtggattttctgcaatgcttacacagagtgaagcttctgca |
16487447 |
T |
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| Q |
333 |
ttagctggtatttcatctt |
351 |
Q |
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| T |
16487448 |
ttgtctggtatttgatctt |
16487466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 44 - 119
Target Start/End: Original strand, 16458199 - 16458274
Alignment:
| Q |
44 |
caacattgatgatctagatggccaaataccagaatcagttcatcttgagttactatcatcaatcattccaaggtta |
119 |
Q |
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| T |
16458199 |
caacattaatggtgtagatggccaaataccagaatcagttcatcttgatttactatcatcaatcattccaaggtta |
16458274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 41 - 119
Target Start/End: Original strand, 16487154 - 16487232
Alignment:
| Q |
41 |
aaacaacattgatgatctagatggccaaataccagaatcagttcatcttgagttactatcatcaatcattccaaggtta |
119 |
Q |
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| T |
16487154 |
aaacaacattaatggtgaagatgaccaaataccagaatcagttcatattgagttactatcatcaatcattccaaggtta |
16487232 |
T |
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