View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2812_low_7 (Length: 202)
Name: NF2812_low_7
Description: NF2812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2812_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 42471541 - 42471368
Alignment:
| Q |
18 |
cctttgacacggataacaccgaggcattcatattttatgaaaacctttgtgctctcatagactatgctccgcagtcagatgaagacaaaataatctcggg |
117 |
Q |
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| T |
42471541 |
cctttgacacggataacacctaggcattcatattttatgaaaacctttgtgctctcatagactatgctccgcagtcagatgaagacaaaataatctcggg |
42471442 |
T |
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| Q |
118 |
tcctaagataatctctgacatgtttccttttttcaaagggaccgtgtttgaaaacggaatcgatgctgcgttca |
191 |
Q |
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| T |
42471441 |
tcctaagataatctctgacatgtttccttttttcaaagggaccgtgtttgaaaacggaatcgatgctgcgttca |
42471368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 6e-36; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 14452521 - 14452689
Alignment:
| Q |
18 |
cctttgacacggataacaccgaggcattcatattttatgaaaacctttgtgctctcatagactatgctccgcagtcagatgaagacaaaataatctcggg |
117 |
Q |
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| T |
14452521 |
cctttgacaccgataacaacgaggcattcatcttttatgaaaatttttgtgctctcatagactatgcaccacactccgacaaagacaaaataatcactgg |
14452620 |
T |
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| Q |
118 |
tcctaagataatctctgacatgtttccttttttcaaagggaccgtgtttgaaaacggaatcgatgctgc |
186 |
Q |
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| T |
14452621 |
tcctaagaaaattgccgacatgtttccttttttcaaaggaaccgtattcgaaaatggaatagacgctgc |
14452689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 9e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 3352240 - 3352408
Alignment:
| Q |
18 |
cctttgacacggataacaccgaggcattcatattttatgaaaacctttgtgctctcatagactatgctccgcagtcagatgaagacaaaataatctcggg |
117 |
Q |
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| T |
3352240 |
cctttaacaccgataacaacgaagcattcatcttttatgaaaacttttgtgctctcatagactatgcaccatactcgggcaacgtcaaaataatctcagg |
3352339 |
T |
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| Q |
118 |
tcctaagataatctctgacatgtttccttttttcaaagggaccgtgtttgaaaacggaatcgatgctgc |
186 |
Q |
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| T |
3352340 |
ccctaagaaaattgctgacatgtttccttttttcaaaggaaccatgtttgaaaagggagtagatgctgc |
3352408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 20 - 177
Target Start/End: Complemental strand, 42046352 - 42046195
Alignment:
| Q |
20 |
tttgacacggataacaccgaggcattcatattttatgaaaacctttgtgctctcatagactatgctccgcagtcagatgaagacaaaataatctcgggtc |
119 |
Q |
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| T |
42046352 |
tttgacaccgataacaaccaggcattcatctttcatgaaaatttttgtgctctaatagactatgctccatactcttgcaacgacaaattaatctccggtc |
42046253 |
T |
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| Q |
120 |
ctaagataatctctgacatgtttccttttttcaaagggaccgtgtttgaaaacggaat |
177 |
Q |
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|||| | ||| ||||| ||||||||||||||||||| || |||||||||| |||||| |
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| T |
42046252 |
ctaaaaaaattgctgacgtgtttccttttttcaaaggaacggtgtttgaaagcggaat |
42046195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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