View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2813-Insertion-1 (Length: 858)
Name: NF2813-Insertion-1
Description: NF2813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2813-Insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 662; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 662; E-Value: 0
Query Start/End: Original strand, 178 - 855
Target Start/End: Original strand, 53249522 - 53250199
Alignment:
| Q |
178 |
gtttacaagttgaacagatttaacagcattcagtattcaccatttagtacactcaatcgttccggtgccatcgtcaagtacaaacttaaattcagtaatc |
277 |
Q |
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| T |
53249522 |
gtttacaagttgaacagatttaacagcattcagtattcaccatttagtacactcaatcgttccggtgccatcgtcaagtacaaacttaaattcagtaatc |
53249621 |
T |
|
| Q |
278 |
tgtccagatttgttgcaaaccctaccaacaagagtaacctgagcacaaaattgtgagaacaagaaaaaccacaaatcgtaattcacaatagaagattcga |
377 |
Q |
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| T |
53249622 |
tgtccagatttgttgcaaaccctaccaacaagagtaacctgaacacaaaattgtgagaacaagaaaaaccacaaatcgtaattcacaatagaagattcga |
53249721 |
T |
|
| Q |
378 |
gtaacgcacggtgttaacgccaacaccgtcaatagtaagaccggttctatcatcacttgattgaagagcatggttgatctgcttgatcgtcagcggaagc |
477 |
Q |
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| T |
53249722 |
gtaacgcacggtgttaacgccaacaccgtcaatagtaagaccggttctatcatcacttgattgaagagcatggttgatctgcttgatcgtcagcggaagc |
53249821 |
T |
|
| Q |
478 |
aaagtttgactttcgcgattctgaaaaagcaaataataaaccctaaaccacatcaattacatgaaaatcaaatcaaaaccctaaatcctaaacctagcgt |
577 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53249822 |
aaagtttgactttcgcgattctgaaaaagcaaataataaaccctaaaccacatcaattacatgaaaatcaaatcaaaaccctaaatcctaaacctagcgt |
53249921 |
T |
|
| Q |
578 |
gtctaattgaagttgcggttaagattattaagaagaaaatggagagtgagaactgagaagaaccttggagggagtgagagaggattcaccgccttgattg |
677 |
Q |
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| T |
53249922 |
gtctaattgaagttgcggttaagattattaagaagaaaatggagagtgagaactgagaagaaccttggagggagtgagagaggattcaccgccttgattg |
53250021 |
T |
|
| Q |
678 |
ctctgagaaggcatgaaaccgccgccggcgaaggcggcgttgccgtcgaactgattcgcatgcatggtgccgattttccgcgattgaaatgaagtgattg |
777 |
Q |
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| T |
53250022 |
gtctgagaaggcatgaaaccgccgccggcgaaggcggcgttgccgtcgaactgattcgcatgcatggtgccgattttccgcgattgaaatgaagtgattg |
53250121 |
T |
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| Q |
778 |
aacagaagtttcgaatttcacaattcgctgtgtcgatatttaatatctaaataattggtttcccgccatttttcttcc |
855 |
Q |
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| T |
53250122 |
aacagaaatttcgaatttcacatttcgctgtgtcgatatttaatatctaaataattggtttcccgccatttttcttcc |
53250199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 7 - 140
Target Start/End: Original strand, 53249351 - 53249484
Alignment:
| Q |
7 |
agtatagtactaaatgcaatacaataaggcaacatacaatcccgtnnnnnnnnggtaacatacatgatactctccactgccattgcatcagcaggttcgt |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
53249351 |
agtatagtactaaatgcaatacaataaggcaacatacaatcccgtaaagaaaaggtaacatacaagatactctccactgccattgcatcagcaggttcgt |
53249450 |
T |
|
| Q |
107 |
gaagcctgcaagcagacaaaaactcatcgttcac |
140 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
53249451 |
gaagcctgcaagcagacaaaaactcatcgttcac |
53249484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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