View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2813-Insertion-11 (Length: 632)
Name: NF2813-Insertion-11
Description: NF2813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2813-Insertion-11 |
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| [»] scaffold0221 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 9e-81; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 8 - 176
Target Start/End: Original strand, 14459511 - 14459679
Alignment:
| Q |
8 |
tgtttctctcacctttcaaaggacagttatttttaatctacgatgcaatattacaatattttattacctataacgatagtacgtacccaccatggtctta |
107 |
Q |
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| T |
14459511 |
tgtttctctcacctttcaaaggacagttatttttaatctacgatgcaatattacaatattttattacctataacgatagaaagcacccaccatggtctta |
14459610 |
T |
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| Q |
108 |
aaccaaggccgcgatgtgatgtgatgcggcttttgcacccactttgttacaactgttgtgttgttacaa |
176 |
Q |
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| T |
14459611 |
aaccaaggccgcgatgtaatgtgatgcggcttttgcacccactttgttacaactgttgtgttgttacaa |
14459679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 543 - 630
Target Start/End: Original strand, 14460462 - 14460549
Alignment:
| Q |
543 |
aacagacttggttagtgcagtaaaccaccttccttttttaatagaattgcatctatcttcttgccatctttttggtcaaatttcatct |
630 |
Q |
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| T |
14460462 |
aacagacttggttagtgcagtaaaccaccttccttttttaatagaattgcatctatcttcttgccatctttttggccaaatttcatct |
14460549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 543 - 630
Target Start/End: Complemental strand, 14495378 - 14495291
Alignment:
| Q |
543 |
aacagacttggttagtgcagtaaaccaccttccttttttaatagaattgcatctatcttcttgccatctttttggtcaaatttcatct |
630 |
Q |
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| T |
14495378 |
aacagacttggttagtgcagtaaaccaccttccttttttaatagaattgcatctatcttcttgccatctttttggccaaatttcatct |
14495291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 318 - 379
Target Start/End: Original strand, 14453848 - 14453909
Alignment:
| Q |
318 |
atctattattaaacaatgtagaatgactgattcaaaatacctattacatttatctattttat |
379 |
Q |
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| T |
14453848 |
atctattactaaacaatgtagaatgactgattcaacattcctattgtatttatcaattttat |
14453909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 543 - 629
Target Start/End: Complemental strand, 14470957 - 14470871
Alignment:
| Q |
543 |
aacagacttggttagtgcagtaaaccaccttccttttttaatagaattgcatctatcttcttgccatctttttggtcaaatttcatc |
629 |
Q |
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| T |
14470957 |
aacagattgggttagtacactgaaccagctaccttctttaatgaaattgcatctatcttcttgcaaactttttggtcatattccatc |
14470871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 542 - 630
Target Start/End: Original strand, 14455971 - 14456059
Alignment:
| Q |
542 |
aaacagacttggttagtgcagtaaaccaccttccttttttaatagaattgcatctatcttcttgccatctttttggtcaaatttcatct |
630 |
Q |
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| T |
14455971 |
aaacaaactgggttagttcattaagccaatttccttttttaatagaattgcatctacatttctgtcagctttttggtcatattccatct |
14456059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0221 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0221
Description:
Target: scaffold0221; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 333 - 387
Target Start/End: Original strand, 9319 - 9373
Alignment:
| Q |
333 |
atgtagaatgactgattcaaaatacctattacatttatctattttatacctctaa |
387 |
Q |
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| T |
9319 |
atgtagaatgtctgattccaaacacctatttcatttatctattttgtacgtctaa |
9373 |
T |
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