View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2813-Insertion-4 (Length: 801)
Name: NF2813-Insertion-4
Description: NF2813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2813-Insertion-4 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 7 - 363
Target Start/End: Complemental strand, 11785136 - 11784780
Alignment:
| Q |
7 |
atttggaagggttgcttatgacttcaaaagatagatgatataaatcaaaatatgaatatttaaatcctttgatctgtttcgttaaattatgaagttccac |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11785136 |
atttggaagggttgcttatgacttcaaaagatagatgatataaatcaaaatatgaatatttaaatcctttgatctgtttcgttaaattatgaagttccac |
11785037 |
T |
|
| Q |
107 |
cgatagttttgtgttgtgcactttggcaagtgccgaatactcttcaatgcaagaacctgatttagttccatttaccaatgccttgatgattggaaaacaa |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11785036 |
tgatagttttgtgttgtgcactttggcaagtgccgaatactcttcaatgcaagaacctgatttagttccatttaccaatgccttgatgattggaaaacaa |
11784937 |
T |
|
| Q |
207 |
ccaaaagatggttggttaagaatcccaaatttcctccctccaatctcatgtattccctgaaattaaatattggaatgaatcagatacataaataattaga |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11784936 |
ccaaaagatggttggttaagaatcccaaatttcctccctccaatctcatgtattctctgaaattaaatattggaatgaatcagatacataaataattaga |
11784837 |
T |
|
| Q |
307 |
atagtaaaatatttaggacgtgtttgaataaacagattaattagttgcttatttcct |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11784836 |
atagtaaaatatttaggacgtgtttgaataaacagattaattagttgcttatttcct |
11784780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 430 - 801
Target Start/End: Complemental strand, 11784735 - 11784365
Alignment:
| Q |
430 |
ctatcttcatatatgttataagttattttcataagctataattgagcttataaaaataagttgaaaataggttataacatgtatgtcatgagttgtttta |
529 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11784735 |
ctatcttcatatatgttataagttattttcataagctataattgagcttataaaaataagttgaaaataggttataacatgtatgtcatgagttgtttta |
11784636 |
T |
|
| Q |
530 |
ttaattctttcaaacaatcttacaaattgtttgtactgatnnnnnnngtttaaataagtcaatttaaaaatgcttttattataaccaaaaggacttcaat |
629 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
11784635 |
ttacttctttcaaacaatcttacaaattgtttgtactgataaaaaa-gtttaaataagtcaatttaaaaatgcttttattataaccaaaagaacttcaat |
11784537 |
T |
|
| Q |
630 |
ataaaaatacagaagtaaagtaactcttacatactttgatcactgttgtaagattaccaactaccatggatacgtatttttcatgagtgtataaactgga |
729 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
11784536 |
ataaaaatacagaagtaaagtaactcttacatactttgatcactgttgtaagattaccaactaccatggatacgtatttttcatgagtgtataagctgga |
11784437 |
T |
|
| Q |
730 |
attttctacaaaataatcattccctcctatattaatcaagaaaacagctttggccagcagagttgtggtttc |
801 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
11784436 |
attttctacaaaataatcattccctcctatattaatcaagtaaacagctttggccagcagagttgtggtttc |
11784365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 7 - 273
Target Start/End: Complemental strand, 11779857 - 11779591
Alignment:
| Q |
7 |
atttggaagggttgcttatgacttcaaaagatagatgatataaatcaaaatatgaatatttaaatcctttgatctgtttcgttaaattatgaagttccac |
106 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||| | ||||||||| |
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| T |
11779857 |
atttggaagggttccttatgacttcaaaagatagatgatagaaatcaaaatatgaatatttaaatcctttgatcttttttgttaaattcttaagttccac |
11779758 |
T |
|
| Q |
107 |
cgatagttttgtgttgtgcactttggcaagtgccgaatactcttcaatgcaagaacctgatttagttccatttaccaatgccttgatgattggaaaacaa |
206 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||| ||||||||| |||||||||||| ||| ||||| |
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|
| T |
11779757 |
tgatagttttgtgttgtgcacttcagcaagtgctgaaaactcttcaatgcaagaacctgatttagatccatttacaaatgccttgatggctgggaaacag |
11779658 |
T |
|
| Q |
207 |
ccaaaagatggttggttaagaatcccaaatttcctccctccaatctcatgtattccctgaaattaaa |
273 |
Q |
| |
|
|||| |||| |||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
11779657 |
ccaagagatagttgattaagaatcccaaatttcctccctcccatctcatatattccctgaaattaaa |
11779591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 54 - 268
Target Start/End: Complemental strand, 11765241 - 11765027
Alignment:
| Q |
54 |
aaatatgaatatttaaatcctttgatctgtttcgttaaattatgaagttccaccgatagttttgtgttgtgcactttggcaagtgccgaatactcttcaa |
153 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| || | ||||| ||| || || |||| |||| |||||||||||| ||| ||||||||| |
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|
| T |
11765241 |
aaatatgaatatttaaatcctttgatctgtttctttaacttgttaagttgcacagaaagcacattgttatgcagtttggcaagtgctgaaaactcttcaa |
11765142 |
T |
|
| Q |
154 |
tgcaagaacctgatttagttccatttaccaatgccttgatgattggaaaacaaccaaaagatggttggttaagaatcccaaatttcctccctccaatctc |
253 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||| |
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|
| T |
11765141 |
tgcaagaatctgatttagttccatttacaaatgccttgatggttggaaaacaaccaagagatggttggttaagaatcccgaatttcctcccaccaatctc |
11765042 |
T |
|
| Q |
254 |
atgtattccctgaaa |
268 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
11765041 |
atgtattccctgaaa |
11765027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 505 - 801
Target Start/End: Complemental strand, 11779244 - 11778948
Alignment:
| Q |
505 |
aacatgtatgtcatgagttgttttattaattctttcaaacaatcttacaaattgtttgtactgatnnnnnnngtttaaataagtcaatttaaaaatgctt |
604 |
Q |
| |
|
|||||||||||||||| || |||| | || ||| || ||||||||| ||||| || ||||||||| |||||||||| ||||| |||| | |||| |
|
|
| T |
11779244 |
aacatgtatgtcatgaatttttttgtaaactctctcgaacaatcttgcaaat-gtatgtactgataaaaagagtttaaataaatcaatctaaacaagctt |
11779146 |
T |
|
| Q |
605 |
ttattataaccaaaaggacttcaatataaaaa-tacagaagtaaagtaactcttacatactttgatcactgttgtaagattaccaactaccatggatacg |
703 |
Q |
| |
|
||||||||| ||| | ||||| ||||||||| | |||||| |||| |||| ||||||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
11779145 |
ttattataaggaaatgaacttccatataaaaaatgcagaagaaaagaaacttttacatactttgatcacatctgtgagattaccaactaccatggataca |
11779046 |
T |
|
| Q |
704 |
tatttttcatgagtgtataaactggaattttctacaaaataatcattccctcctatattaatcaagaaaacagctttggccagcagagttgtggtttc |
801 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||||||||| |||||| ||||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
11779045 |
tatttttcatgagtgtataagctggaattttctgcaaaataatcattgtttcctatgttaatcaagtaaacagctttggccaacagagttgtggtttc |
11778948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 604 - 801
Target Start/End: Complemental strand, 11770925 - 11770725
Alignment:
| Q |
604 |
tttattataaccaaaaggacttcaatat---aaaaatacagaagtaaagtaactcttacatactttgatcactgttgtaagattaccaactaccatggat |
700 |
Q |
| |
|
||||||||||| ||| | |||| ||||| ||||||| ||||||||||| ||| ||||||||||||||| ||||||| ||||||||| ||||| ||| |
|
|
| T |
11770925 |
tttattataacgaaatgaactttaatattaaaaaaatatagaagtaaagtgacttttacatactttgatccaagttgtaatattaccaaccaccattgat |
11770826 |
T |
|
| Q |
701 |
acgtatttttcatgagtgtataaactggaattttctacaaaataatcattccctcctatattaatcaagaaaacagctttggccagcagagttgtggttt |
800 |
Q |
| |
|
|| |||||||||||||||||||| |||||||||||| ||||||||||||| ||| | || ||||||||| ||||||||||||||| |||| ||||||||| |
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|
| T |
11770825 |
acatatttttcatgagtgtataagctggaattttctgcaaaataatcattgcctgcaatgttaatcaagtaaacagctttggccaacagatttgtggttt |
11770726 |
T |
|
| Q |
801 |
c |
801 |
Q |
| |
|
| |
|
|
| T |
11770725 |
c |
11770725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 631 - 801
Target Start/End: Complemental strand, 11764707 - 11764537
Alignment:
| Q |
631 |
taaaaatacagaagtaaagtaactcttacatactttgatcactgttgtaagattaccaactaccatggatacgtatttttcatgagtgtataaactggaa |
730 |
Q |
| |
|
||||||| |||||| |||| |||| ||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
11764707 |
taaaaatgcagaagaaaagaaacttttacatactttgatcacatctgtgagattaccaactaccatggatacatatttttcatgagtgtataagctggaa |
11764608 |
T |
|
| Q |
731 |
ttttctacaaaataatcattccctcctatattaatcaagaaaacagctttggccagcagagttgtggtttc |
801 |
Q |
| |
|
|||||| |||||||||||| | ||| || ||||||||| |||| |||||||||| ||||||||| ||||| |
|
|
| T |
11764607 |
ttttctgaaaaataatcattgcttccaatgttaatcaagtaaactgctttggccaacagagttgtagtttc |
11764537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 58 - 270
Target Start/End: Complemental strand, 11771286 - 11771074
Alignment:
| Q |
58 |
atgaatatttaaatcctttgatctgtttcgttaaattatgaagttccaccgatagttttgtgttgtgcactttggcaagtgccgaatactcttcaatgca |
157 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||| || | ||||||| | || || | ||||||||||||| || |||| ||| ||||||||| || |
|
|
| T |
11771286 |
atgaatatttaaatcctttgatctctttggttaacttctcaagttcctcagaaagcatagtgttgtgcacttgagctggtgctgaaaactcttcaagaca |
11771187 |
T |
|
| Q |
158 |
agaacctgatttagttccatttaccaatgccttgatgattggaaaacaaccaaaagatggttggttaagaatcccaaatttcctccctccaatctcatgt |
257 |
Q |
| |
|
||||||| |||||| |||||||| | || |||| | |||||||||||| | ||||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
11771186 |
agaacctattttagtcccatttacaagagcattgacaaatggaaaacaacctatagatggtgtgttaagaagcccaaatttcctccctccaatctcatgc |
11771087 |
T |
|
| Q |
258 |
attccctgaaatt |
270 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
11771086 |
actccctgaaatt |
11771074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 439 - 496
Target Start/End: Complemental strand, 19302636 - 19302581
Alignment:
| Q |
439 |
tatatgttataagttattttcataagctataattgagcttataaaaataagttgaaaa |
496 |
Q |
| |
|
||||||||||||||| |||| ||||||||||| || ||||| ||||||||||||||| |
|
|
| T |
19302636 |
tatatgttataagttgtttttataagctataa--gaacttatgaaaataagttgaaaa |
19302581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 435 - 468
Target Start/End: Original strand, 9634761 - 9634794
Alignment:
| Q |
435 |
ttcatatatgttataagttattttcataagctat |
468 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |
|
|
| T |
9634761 |
ttcatatatgttataagttgttttcataagctat |
9634794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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