View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2813-Insertion-6 (Length: 747)

Name: NF2813-Insertion-6
Description: NF2813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2813-Insertion-6
NF2813-Insertion-6
[»] chr4 (1 HSPs)
chr4 (8-747)||(3676348-3677085)


Alignment Details
Target: chr4 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 8 - 747
Target Start/End: Complemental strand, 3677085 - 3676348
Alignment:
Q  8 cgagcaccatctcctaattttannnnnnnatcataaaaattgaagcacacactcttaaaaaatgaaagcttgaaacaagtaaataaaattcaattcatag 107  Q
    ||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3677085 cgagcaccatctcctaattttatttttttatcataaaaattgaagcacacactcttaaaaaatgaaagcttgaaacaagtaaataaaattcaattcatag 3676986  T
Q  108 ataaaaaccatatttatagttatattgataatttttccacaaaaaaggttaaagtacnnnnnnnnnnnnnnngttacacggttaaagtacttttaacaca 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||               ||||||||||||||||||||||||||||    
T  3676985 ataaaaaccatatttatagttatattgataatttttccacaaaaaaggttaaagtactttttttttttt---gttacacggttaaagtacttttaacaca 3676889  T
Q  208 tagacattaggtttaaataattttgatgggattaaatttgaatataattatcacccttgaactttctttttacataaccatccttgcatttattttcccc 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3676888 tagacattaggtttaaataattttgatgggattaaatttgaatataattatcacccttgaactttctttttacataaccatccttgcatttattttcccc 3676789  T
Q  308 tnnnnnnnnnnnnnnnnnntccttgcatttattttcgggataaccatactgtaacttgaaacatcactttttcgcttatgcataaacacattcaaaataa 407  Q
    |                  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3676788 taaaaaataaaataaaaaatccttgcatttattttcgggataaccatactgtaacttgaaacatcactttttcgcttatgcataaacacattcaaaataa 3676689  T
Q  408 aaatttggaaaagnnnnnnnaaccctttgatataaggaaataacagggatcataattttacctctaccccttaagtagaaggaaaaggtaaaatataaag 507  Q
    |||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3676688 aaatttggaaaagtttttttaaccctttgatataaggaaataacagggatcataattttacctctaccccttaagtagaaggaaaaggtaaaatataaag 3676589  T
Q  508 caag-nnnnnnnnncaataactataattaatttattagataaccgtgtgaattttttaagaaaatattgtgttcttatgagtatactaaatgtgtatttt 606  Q
    ||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3676588 caagaaaaaaaaaacaataactataattaatttattagataaccgtgtgaattttttaagaaaatattgtgttcttatgagtatactaaatgtgtatttt 3676489  T
Q  607 gttattttattgttctttcttccaaccttcatgtgtagctcacgcactctttgattggcttatacccnnnnnnnnnnnnnnttgac-aacttatactcaa 705  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||              ||||| |||||||||||||    
T  3676488 gttattttattgttttttcttccaaccttcatgtgtagctcacgcgctctttgattggcttataccc-aaaaaaaaaaaaattgacaaacttatactcaa 3676390  T
Q  706 aattttagaattggtttcaaaaacaaaactttaactccaaaa 747  Q
    || |||||||||||||||||||||||||||| ||||||||||    
T  3676389 aaatttagaattggtttcaaaaacaaaacttaaactccaaaa 3676348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University