View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2813-Insertion-9 (Length: 644)
Name: NF2813-Insertion-9
Description: NF2813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2813-Insertion-9 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 272 - 644
Target Start/End: Complemental strand, 418396 - 418015
Alignment:
| Q |
272 |
cctattgctttgctaagtacataccacttctagtcttaacaaataacccaaaaataaagtttaatcatatcatact---------------------cta |
350 |
Q |
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| T |
418396 |
cctattgcattgctaagtacataccacttctagtcttaacaaataacccaaaaataaagttaaatcatatcatactatactatgactatctatctatcta |
418297 |
T |
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| Q |
351 |
tctcaatccaaaaataaatctatatatatgttatacaattacacttaatttaaaatagtgggagcatcatgtttttattgtgttttgttttatggcattt |
450 |
Q |
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| T |
418296 |
tctcaatccaaaaataaatctatatatatgttatacaattatacttaatttaaaatagtgggagcatcatgtttttattgtgtttt-----atggcattt |
418202 |
T |
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| Q |
451 |
gattgcatggggtctctttctctaatttctcatactcaacaagagtgtttggtgggaacctggatggtcatcgagtcatgaccttgagtgggagtggnnn |
550 |
Q |
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| T |
418201 |
gattgcatggggtctctttctctaatttctcatactcaacaagagtgtttggtgggaacctggatggtcatcgagtcatgaccttgagtgggagag---- |
418106 |
T |
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| Q |
551 |
nnnnnnnnnnntgttgatgtaacgcgtttacacacgcaacaccaattgcctttttaagtgtttcttttataacacttgtatcattgtgagttga |
644 |
Q |
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| T |
418105 |
--agagagagatgttgatgtaacgcgtttacacacacaacaccaattgcctttttaagtgtttc-tttataacacttttatcattgtgagttga |
418015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 8 - 240
Target Start/End: Complemental strand, 418651 - 418423
Alignment:
| Q |
8 |
tttttaccacaaaaatggagtgatcatgtatgtgaaattttgttatgaaaattgggattcccacatctttgatttatagctgagaacatttatattggaa |
107 |
Q |
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| T |
418651 |
tttttaccacaaaaatggagtgatcatgtatgtgaaattttgttatgaaaattgggattcccacatctttgatttatagctgagaacatttatattggaa |
418552 |
T |
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| Q |
108 |
tcccaagccgtcaagctgtctcctatatggaagctatatagctgtactactaaactcagtaataatattacttacatatcaacctgcagatgctctctat |
207 |
Q |
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| T |
418551 |
tcccaagccgtcaagctgtctcctatatggaagctatatagctgtactactaaactcagtaataata----ttacatatcaacctgcagatgctctctat |
418456 |
T |
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| Q |
208 |
cacatagtatagtatagtatagtacacaacaca |
240 |
Q |
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| T |
418455 |
cacatagtatagtatagtatagtacacaacaca |
418423 |
T |
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