View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2813R-Insertion-3 (Length: 875)
Name: NF2813R-Insertion-3
Description: NF2813R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2813R-Insertion-3 |
 | |
|
| [»] chr6 (6 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 721; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 721; E-Value: 0
Query Start/End: Original strand, 9 - 875
Target Start/End: Complemental strand, 5921588 - 5920724
Alignment:
| Q |
9 |
caatcttggctcatcaatttcgtttcagattctattgctcaaattgttgtcttctttgtcattgcatatgaggtatggcaagatctccatgaaagtttct |
108 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||| || ||| |
|
|
| T |
5921588 |
caatcttggctcatcaattccgtttcaaattctattgctcaaactgttgtcttctatgtcattgcttatgaggtatggcaagatctccatgaacgtatct |
5921489 |
T |
|
| Q |
109 |
ctaaggttgatcgcattcgtattacaaatttgcgttcttctattaacaatttgaaacaaggtgcaaaatatgttcttgagtattttactgaattgaaagc |
208 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5921488 |
ctaaggttgatcgcatttgtattgcaaatttgcgttcttctattaacaatttgaaacaaggtgcaaaatatgttcttgagtattttactgaattgaaagc |
5921389 |
T |
|
| Q |
209 |
gttatgggaagaactttcaccacatagactaattccatcttgtatttgtgttcatgcttgccattgtgatgctactagggttgctaagatttacagaact |
308 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5921388 |
gttatgggaagaactttcatcacatagaccaattccatcttgtatttgtgttcatgcttgccgttgtgatgctactagggttgctaagatttacagaact |
5921289 |
T |
|
| Q |
309 |
gaggatcaaatcatgcagtttttgactagtttgaatgataattttggggttgttaagactcaagttcttcttcttgatcctcttcctcctctcaagaagg |
408 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
5921288 |
gaggatcaaatcatgcagtttttgactggtttgaatgataattttggggttgttaagactcaagttcttcttcttgatcctcttcctccgctcaagaagg |
5921189 |
T |
|
| Q |
409 |
tttactctcttgtggtgcaagaagaaagcaataattctttaccaatttcagtctctgcttcagatgatagtaacatacaattgaatgcttctgaggttaa |
508 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
5921188 |
tttactctcttgtggtgcaagaagaaaacaataattctttaccaatttcagtcactgcttcagatgatagtaacatacaattgaatgcttatgaggttaa |
5921089 |
T |
|
| Q |
509 |
gaaatcacaaggacgtggtaaaggttctcttttgttcattctcaaaaacctactaggtattgcaccttttgtcacaagactaatcacacagttgattttt |
608 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
5921088 |
gaaatcacaaggacgtggtaaaggt--tcttttgttcattctcaaaaacctactacgtattgcaccttttgtcacaagactaatcacacaattgattttt |
5920991 |
T |
|
| Q |
609 |
gttatcaaaaacatggccaccctagttttcctaagcaacaatctagagtaaatgctgctactcatgggatccttgatgaaaatggtgcattggatcatgg |
708 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||| |||| |||||| |||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
5920990 |
gttatcaaaaacatggctaccctagttttcctaagcaacaatcaagaggaaatgcagctactcatgagatccttgatgaaaatggtgcattggatcatgg |
5920891 |
T |
|
| Q |
709 |
tttggggggctctacaggttctggtacttgtttgtctccagagcaatatactcaacttgtttcc-ttgctacaacatgctagtttggtttcctcatcatc |
807 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||| |
|
|
| T |
5920890 |
tttggggggctctacaggttctggtacctgtttgtctccagagcaatatactcaacttgtttcctttgctacaacaggcaagtttggtttcctcatcatc |
5920791 |
T |
|
| Q |
808 |
tctcccttctacttcaaatgccaccaccaaccatgtccaagtcactcccttttgtttctattagcatc |
875 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||| ||||||| |
|
|
| T |
5920790 |
tctcccttctacttcaaattccaccaccaaccatatccaagtcact-ccttttgtttctactagcatc |
5920724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 174 - 421
Target Start/End: Original strand, 26968195 - 26968443
Alignment:
| Q |
174 |
aaatatgttcttgagtattttactgaattgaaagcgttatgggaagaactttcaccacatagactaattccatcttgtatttgtgttcatgcttgccatt |
273 |
Q |
| |
|
|||| ||||||||| ||||||||||| ||||| |||||| | |||||||| ||||||||| ||||| ||||| | ||||||||| |||| | || |
|
|
| T |
26968195 |
aaatctgttcttgaatattttactgagttgaagagtttatggtaggaactttcttcacatagacctattcctacttgtgtatgtgttcatccttgtcgtt |
26968294 |
T |
|
| Q |
274 |
gtgatgctactagggttgctaagatttacagaactgaggatcaaatcatgcagtttttgactagtttgaatga-taattttggggttgttaagactcaag |
372 |
Q |
| |
|
|||| || ||||| ||||||||| | || |||| ||| || ||||| ||||| ||| ||||| |||||||||| |||||| | | ||||||||||| |
|
|
| T |
26968295 |
gtgaagcaactagagttgctaaggtgtatagaaatgaagaccaaattatgcaatttctgactggtttgaatgaccaattttaccatagataagactcaag |
26968394 |
T |
|
| Q |
373 |
ttcttcttcttgatcctcttcctcctctcaagaaggtttactctcttgt |
421 |
Q |
| |
|
| | | ||||||||| ||||| ||||||| || |||||||||||||| |
|
|
| T |
26968395 |
tcatgttacttgatcctattccttctctcaataaagtttactctcttgt |
26968443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 115 - 395
Target Start/End: Original strand, 14813345 - 14813625
Alignment:
| Q |
115 |
ttgatcgcattcgtattacaaatttgcgttcttctattaacaatttgaaacaaggtgcaaaatatgttcttgagtattttactgaattgaaagcgttatg |
214 |
Q |
| |
|
||||||| ||||| ||| ||||||| |||||| || || |||||||||||||| |||||| |||| | || ||||| |||||| |||| | ||||| |
|
|
| T |
14813345 |
ttgatcgtattcgcattgcaaatttacgttctaacatcaataatttgaaacaaggatcaaaatctgttttggattatttcactgaaatgaagtccttatg |
14813444 |
T |
|
| Q |
215 |
ggaagaactttcaccacatagactaattccatcttgtatttgtgttcatgcttgccattgtgatgctactagggttgctaagatttacagaactgaggat |
314 |
Q |
| |
|
||| ||| | || ||||||||| || || |||| |||||||||| |||| | ||||| ||| ||| |||||||||||| | |||| ||||||| |
|
|
| T |
14813445 |
ggaggaattatcttcacatagacctatccctaattgttcttgtgttcatccttgtcgttgtgctgcatctaaagttgctaagattcatagaaatgaggat |
14813544 |
T |
|
| Q |
315 |
caaatcatgcagtttttgactagtttgaatgataattttggggttgttaagactcaagttcttcttcttgatcctcttcct |
395 |
Q |
| |
|
|| || ||||| ||| | || | ||||||||| | ||| ||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
14813545 |
cagattatgcaatttcttacaggattgaatgatcaattttctgttgttagaactcaagttcttctccttgatcctcttcct |
14813625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 738 - 795
Target Start/End: Original strand, 26968721 - 26968778
Alignment:
| Q |
738 |
gtttgtctccagagcaatatactcaacttgtttccttgctacaacatgctagtttggt |
795 |
Q |
| |
|
|||| |||| |||||||||| ||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
26968721 |
gtttatctcaagagcaatatgctcaactagtttccttgctacaacaggctagtttggt |
26968778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 569 - 624
Target Start/End: Original strand, 17118914 - 17118969
Alignment:
| Q |
569 |
tgcaccttttgtcacaagactaatcacacagttgatttttgttatcaaaaacatgg |
624 |
Q |
| |
|
||||| |||| | |||||| |||||| || |||||||||||||||||||||||||| |
|
|
| T |
17118914 |
tgcacattttttaacaagaataatcatactgttgatttttgttatcaaaaacatgg |
17118969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 357 - 443
Target Start/End: Original strand, 6340973 - 6341059
Alignment:
| Q |
357 |
gttgttaagactcaagttcttcttcttgatcctcttcctcctctcaagaaggtttactctcttgtggtgcaagaagaaagcaataat |
443 |
Q |
| |
|
||||| |||||||||||||||||| | ||||| |||||| | |||| |||||||| ||| | || || ||||||||||| |||||| |
|
|
| T |
6340973 |
gttgtgaagactcaagttcttcttatggatccacttccttcaatcaacaaggtttattctatggttgttcaagaagaaagtaataat |
6341059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 551; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 9 - 865
Target Start/End: Complemental strand, 20325890 - 20325043
Alignment:
| Q |
9 |
caatcttggctcatcaatttcgtttcagattctattgctcaaattgttgtcttctttgtcattgcatatgaggtatggcaagatctccatgaaagtttct |
108 |
Q |
| |
|
||||||||| | ||||||| |||||||||||||||||||||| ||||||||| | || || ||| |||||||||||||||||||| |||||| |||| | |
|
|
| T |
20325890 |
caatcttggataatcaattctgtttcagattctattgctcaaactgttgtcttttatgacactgcttatgaggtatggcaagatcttcatgaacgttttt |
20325791 |
T |
|
| Q |
109 |
ctaaggttgatcgcattcgtattacaaatttgcgttcttctattaacaatttgaaacaaggtgcaaaatatgttcttgagtattttactgaattgaaagc |
208 |
Q |
| |
|
|||||| |||||| ||||||||| |||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| | |
|
|
| T |
20325790 |
ctaaggctgatcgtattcgtattgcaaatttgcgttcttccattaacaacttgaaacaaggtgcaaaatctgttcttgagtattttactgaattgaaatc |
20325691 |
T |
|
| Q |
209 |
gttatgggaagaactttcaccacatagactaattccatcttgtatttgtgttcatgcttgccattgtgatgctactagggttgctaagatttacagaact |
308 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||||| | |||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
20325690 |
tttatgggaagaactttcatcacatagacctattccatcttgtgtgtgtgttcatgcttgccgttgtgatgctactagggtggctaagatttacagaact |
20325591 |
T |
|
| Q |
309 |
gaggatcaaatcatgcagtttttgactagtttgaatgataattttggggttgttaagactcaagttcttcttcttgatcctcttcctcctctcaagaagg |
408 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||| || || | |
|
|
| T |
20325590 |
gaggatcaaattatgcagtttttgactggtttgaatgataattttggagttgttaagactcaagttcttcttcttaatcctcttccacctcttaataaag |
20325491 |
T |
|
| Q |
409 |
tttactctcttgtggtgcaagaagaaagcaataattctttaccaatttcagtctctgcttcagatgatagtaacatacaattgaatgcttctgaggttaa |
508 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20325490 |
tttattctcttgtggtgcaagaagaaagcaataactctttaccaatttcaatctctgcttcagatgatagtaacatacaattgaatgcttctgaggttaa |
20325391 |
T |
|
| Q |
509 |
gaaatcacaaggacgtggtaaaggttctcttttgttcattctcaaaaacctactaggtattgcaccttttgtcacaagactaatcacacagttgattttt |
608 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||| ||||||||||||||| |||||| ||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
20325390 |
gaaatcccaaggacgtggtaaagg-----ttttgttaattctcaaaaacctaataggtactgcactttttgtcacaaaactaatcacacagttgattttt |
20325296 |
T |
|
| Q |
609 |
gttatcaaaaacatggccaccctagttttcctaagcaacaatctagagtaaatgctgctactcatgggatccttgatgaaaatggtgcattggatcatgg |
708 |
Q |
| |
|
|||||||| |||||| || ||||||||||||||||||||||||| ||| | ||||| |||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
20325295 |
gttatcaactacatggtcatcctagttttcctaagcaacaatctaaagtga---ctgcttctcatgagatccctgatgaaaatggtgcattggatcatgg |
20325199 |
T |
|
| Q |
709 |
tttggggggctctacaggttctggtacttgtttgtctccagagcaatatactcaacttgtttccttgctacaacatgctagtttggtttcctcatcatct |
808 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || || ||||||||| |||||||||||||| |
|
|
| T |
20325198 |
tttggggggctctacaggttctggtactagtttgtctccagagcaatatactcaacttgtttccttgctgcagcaggctagtttgatttcctcatcatct |
20325099 |
T |
|
| Q |
809 |
ctcccttctacttcaaatgccaccaccaaccatgtccaagtcactcccttttgtttc |
865 |
Q |
| |
|
| ||| ||||||||||||| |||||||| ||||||||| |||| ||||||||||| |
|
|
| T |
20325098 |
cctcctcctacttcaaatgctaccaccaatcatgtccaaaccact-ccttttgtttc |
20325043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 77 - 224
Target Start/End: Original strand, 15447253 - 15447400
Alignment:
| Q |
77 |
tgaggtatggcaagatctccatgaaagtttctctaaggttgatcgcattcgtattacaaatttgcgttcttctattaacaatttgaaacaaggtgcaaaa |
176 |
Q |
| |
|
|||||| ||||||||||| | || |||| || || |||||||| ||| | ||| |||||| ||||| || ||||||||| | ||||||||| ||| | |
|
|
| T |
15447253 |
tgaggtttggcaagatcttaaggagcgtttttcaaaagttgatcgtattagaattgaaaatttacgttcctccattaacaatctcaaacaaggttcaata |
15447352 |
T |
|
| Q |
177 |
tatgttcttgagtattttactgaattgaaagcgttatgggaagaactt |
224 |
Q |
| |
|
| |||| | |||||||| ||||| |||||||| ||||||||||||||| |
|
|
| T |
15447353 |
tttgttttggagtatttcactgagttgaaagctttatgggaagaactt |
15447400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 288 - 447
Target Start/End: Original strand, 11922982 - 11923141
Alignment:
| Q |
288 |
gttgctaagatttacagaactgaggatcaaatcatgcagtttttgactagtttgaatgataattttggggttgttaagactcaagttcttcttcttgatc |
387 |
Q |
| |
|
||||| |||||||||| |||| | |||||||||||||| ||| |||| | ||||||||| | ||| || | || ||||||||| | |||||||||| |
|
|
| T |
11922982 |
gttgccaagatttacataactaaagatcaaatcatgcaatttctgacaggcttgaatgatcaattttctgtattaaaaactcaagttttgcttcttgatc |
11923081 |
T |
|
| Q |
388 |
ctcttcctcctctcaagaaggtttactctcttgtggtgcaagaagaaagcaataattctt |
447 |
Q |
| |
|
|| ||||| | || || |||||||||| ||||| || |||||||||||||||| |||| |
|
|
| T |
11923082 |
ctattccttccctgaacaaggtttacttccttgttgtttaagaagaaagcaataactctt |
11923141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 357 - 443
Target Start/End: Complemental strand, 16992354 - 16992268
Alignment:
| Q |
357 |
gttgttaagactcaagttcttcttcttgatcctcttcctcctctcaagaaggtttactctcttgtggtgcaagaagaaagcaataat |
443 |
Q |
| |
|
||||| |||||||||||||||||| | ||||| |||||| | |||| |||||||| ||| | || || ||||||||||| |||||| |
|
|
| T |
16992354 |
gttgtgaagactcaagttcttcttatggatccacttccttcaatcaacaaggtttattctatggttgttcaagaagaaagtaataat |
16992268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 289 - 346
Target Start/End: Original strand, 25571626 - 25571683
Alignment:
| Q |
289 |
ttgctaagatttacagaactgaggatcaaatcatgcagtttttgactagtttgaatga |
346 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
25571626 |
ttgctaagctttacagaaccaaggatcaaatcattcagtttttgactggtttgaatga |
25571683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 177
Target Start/End: Complemental strand, 49728251 - 49728189
Alignment:
| Q |
115 |
ttgatcgcattcgtattacaaatttgcgttcttctattaacaatttgaaacaaggtgcaaaat |
177 |
Q |
| |
|
||||||||||||| ||| ||||| |||||||||| || |||||| | ||||| |||||||||| |
|
|
| T |
49728251 |
ttgatcgcattcgcattgcaaatatgcgttcttcaatcaacaatctcaaacagggtgcaaaat |
49728189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 395
Target Start/End: Original strand, 5237887 - 5238167
Alignment:
| Q |
115 |
ttgatcgcattcgtattacaaatttgcgttcttctattaacaatttgaaacaaggtgcaaaatatgttcttgagtattttactgaattgaaagcgttatg |
214 |
Q |
| |
|
||||||| ||||| ||| ||||||| |||||| || || |||||||||||||| ||||| |||| | || ||||| |||||| |||| | ||||| |
|
|
| T |
5237887 |
ttgatcgtattcgcattgcaaatttacgttctaacatcaataatttgaaacaaggattaaaatctgttttggattatttcactgaaatgaagtccttatg |
5237986 |
T |
|
| Q |
215 |
ggaagaactttcaccacatagactaattccatcttgtatttgtgttcatgcttgccattgtgatgctactagggttgctaagatttacagaactgaggat |
314 |
Q |
| |
|
||| ||| | || ||||||||| || || |||| |||||||||| |||| | ||||| ||| ||| |||||||||||| | |||| ||||||| |
|
|
| T |
5237987 |
ggaggaattatcttcacatagacatatccctaattgttcttgtgttcatccttgtcgttgtgctgcatctaaagttgctaagattcatagaaatgaggat |
5238086 |
T |
|
| Q |
315 |
caaatcatgcagtttttgactagtttgaatgataattttggggttgttaagactcaagttcttcttcttgatcctcttcct |
395 |
Q |
| |
|
|| || ||||| ||| | || | ||||||||| | ||| ||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
5238087 |
cagattatgcaatttcttacaggattgaatgatcaattttctgttgttagaactcaagttcttctccttgatcctcttcct |
5238167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 249 - 447
Target Start/End: Original strand, 22642017 - 22642215
Alignment:
| Q |
249 |
tgtatttgtgttcatgcttgccattgtgatgctactagggttgctaagatttacagaactgaggatcaaatcatgcagtttttgactagtttgaatgata |
348 |
Q |
| |
|
||||||||||| ||| | |||| ||||| |||||| | ||||| |||| | | ||||||||||||||||| ||||| ||||| ||| | ||||||||| |
|
|
| T |
22642017 |
tgtatttgtgtgcatccatgccggtgtgaagctactcgtgttgccaagactcatagaactgaggatcaaataatgcaatttttaactggcttgaatgatc |
22642116 |
T |
|
| Q |
349 |
attttggggttgttaagactcaagttcttcttcttgatcctcttcctcctctcaagaaggtttactctcttgtggtgcaagaagaaagcaataattctt |
447 |
Q |
| |
|
| || || || |||||||| |||| | ||||||||||| ||| || | || |||||||| ||| | ||| | |||||||| ||||||||||||| |
|
|
| T |
22642117 |
aattctctgtggtaaagactcagattctattgcttgatcctctaccttctttgaataaggtttattctatggtgattcaagaagagagcaataattctt |
22642215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 221
Target Start/End: Original strand, 25226927 - 25227044
Alignment:
| Q |
105 |
ttctctaaggttgatcgcattcgta-ttacaaatttgcgttcttctattaacaatttgaaacaaggtgcaaaatatgttcttgagtattttactgaattg |
203 |
Q |
| |
|
||||||||| |||||||| || | | || ||||| |||||||||| |||||||| | | ||||||| | |||||||| | |||||||| | |||| || |
|
|
| T |
25226927 |
ttctctaagattgatcgccttagaaattgcaaatatgcgttcttcctttaacaatcttagacaaggtaccaaatatgtgttagagtatttcattgaaatg |
25227026 |
T |
|
| Q |
204 |
aaagcgttatgggaagaa |
221 |
Q |
| |
|
||||| |||||||||||| |
|
|
| T |
25227027 |
aaagctttatgggaagaa |
25227044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 225
Target Start/End: Complemental strand, 34893243 - 34893126
Alignment:
| Q |
108 |
tctaaggttgatcgcattcgtattacaaatttgcgttcttctattaacaatttgaaacaaggtgcaaaatatgttcttgagtattttactgaattgaaag |
207 |
Q |
| |
|
||||| |||||||| ||||| ||| ||||| | ||||| || |||||||| | || |||||| | |||| ||| | |||||||||||||||||||||| |
|
|
| T |
34893243 |
tctaaagttgatcgtattcgcattgcaaatctacgttcctccattaacaacctcaagcaaggttccaaatctgtcttagagtattttactgaattgaaag |
34893144 |
T |
|
| Q |
208 |
cgttatgggaagaacttt |
225 |
Q |
| |
|
| | ||||||||||||| |
|
|
| T |
34893143 |
ctctttgggaagaacttt |
34893126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 187
Target Start/End: Original strand, 13129139 - 13129185
Alignment:
| Q |
141 |
cgttcttctattaacaatttgaaacaaggtgcaaaatatgttcttga |
187 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
13129139 |
cgttcttccattaacaatttgaaacaaggtgataaatctgttcttga |
13129185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 357 - 443
Target Start/End: Complemental strand, 20485189 - 20485103
Alignment:
| Q |
357 |
gttgttaagactcaagttcttcttcttgatcctcttcctcctctcaagaaggtttactctcttgtggtgcaagaagaaagcaataat |
443 |
Q |
| |
|
||||| |||||||||||||||||| | ||||| |||||| | |||| |||||||| ||| | || || ||||||||||| |||||| |
|
|
| T |
20485189 |
gttgtgaagactcaagttcttcttatggatccacttccttcaatcaacaaggtttattctatggttgttcaagaagaaagtaataat |
20485103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 357 - 443
Target Start/End: Original strand, 28016002 - 28016088
Alignment:
| Q |
357 |
gttgttaagactcaagttcttcttcttgatcctcttcctcctctcaagaaggtttactctcttgtggtgcaagaagaaagcaataat |
443 |
Q |
| |
|
||||| |||||||||||||||||| | ||||| |||||| | |||| |||||||| ||| | || || ||||||||||| |||||| |
|
|
| T |
28016002 |
gttgtgaagactcaagttcttcttatggatccacttccttcaatcaacaaggtttattctatggttgttcaagaagaaagtaataat |
28016088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 575 - 624
Target Start/End: Original strand, 15756210 - 15756259
Alignment:
| Q |
575 |
ttttgtcacaagactaatcacacagttgatttttgttatcaaaaacatgg |
624 |
Q |
| |
|
||||||||||||||||||||||| | || ||||| |||||||||||||| |
|
|
| T |
15756210 |
ttttgtcacaagactaatcacactttggaattttgctatcaaaaacatgg |
15756259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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