View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2813R-Insertion-4 (Length: 763)

Name: NF2813R-Insertion-4
Description: NF2813R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2813R-Insertion-4
NF2813R-Insertion-4
[»] chr5 (6 HSPs)
chr5 (9-763)||(41722695-41723450)
chr5 (9-578)||(41718154-41718724)
chr5 (9-344)||(34359934-34360270)
chr5 (25-344)||(34352226-34352546)
chr5 (9-344)||(29585303-29585640)
chr5 (570-763)||(34359474-34359667)
[»] chr4 (18 HSPs)
chr4 (9-412)||(48701824-48702228)
chr4 (9-412)||(48697134-48697539)
chr4 (13-342)||(42265883-42266213)
chr4 (13-342)||(42270602-42270932)
chr4 (12-343)||(24520031-24520363)
chr4 (9-412)||(30945480-30945901)
chr4 (9-412)||(30950186-30950607)
chr4 (9-289)||(10427323-10427594)
chr4 (571-763)||(48697661-48697853)
chr4 (571-763)||(30946023-30946215)
chr4 (561-761)||(42270190-42270390)
chr4 (19-214)||(48782850-48783031)
chr4 (130-271)||(1979240-1979375)
chr4 (59-157)||(17248015-17248112)
chr4 (17-85)||(30165900-30165968)
chr4 (9-85)||(36615362-36615438)
chr4 (72-110)||(1979567-1979604)
chr4 (664-758)||(2003173-2003267)
[»] chr2 (18 HSPs)
chr2 (15-412)||(5198664-5199062)
chr2 (17-289)||(15602911-15603183)
chr2 (9-169)||(825632-825793)
chr2 (9-169)||(830288-830449)
chr2 (569-761)||(829766-829958)
chr2 (13-274)||(28715815-28716070)
chr2 (15-285)||(30396920-30397179)
chr2 (569-758)||(28715361-28715550)
chr2 (568-761)||(13840763-13840960)
chr2 (75-226)||(13843865-13844014)
chr2 (19-166)||(31592923-31593068)
chr2 (101-228)||(8004167-8004292)
chr2 (11-228)||(13840245-13840456)
chr2 (219-298)||(830209-830291)
chr2 (219-298)||(825553-825635)
chr2 (26-141)||(12175768-12175881)
chr2 (21-70)||(9358158-9358207)
chr2 (67-176)||(42117769-42117876)
[»] chr3 (13 HSPs)
chr3 (9-343)||(5823278-5823613)
chr3 (9-344)||(5818516-5818852)
chr3 (9-412)||(2817266-2817658)
chr3 (9-298)||(54545906-54546197)
chr3 (561-761)||(54545432-54545632)
chr3 (558-763)||(5819102-5819307)
chr3 (9-159)||(24659139-24659287)
chr3 (14-120)||(4579254-4579360)
chr3 (20-192)||(31204781-31204950)
chr3 (159-289)||(24671173-24671293)
chr3 (44-201)||(35977103-35977258)
chr3 (172-289)||(4579134-4579241)
chr3 (568-605)||(42589352-42589389)
[»] chr6 (18 HSPs)
chr6 (9-344)||(26976134-26976470)
chr6 (9-343)||(1234680-1235015)
chr6 (9-342)||(27873993-27874327)
chr6 (9-412)||(27878712-27879134)
chr6 (9-289)||(18967920-18968191)
chr6 (9-271)||(30986563-30986826)
chr6 (558-763)||(26976720-26976925)
chr6 (561-761)||(27874539-27874739)
chr6 (52-288)||(30966689-30966923)
chr6 (573-763)||(18967353-18967543)
chr6 (11-197)||(21966677-21966860)
chr6 (25-174)||(23012520-23012667)
chr6 (570-686)||(21966493-21966604)
chr6 (570-630)||(30968569-30968629)
chr6 (9-57)||(30967674-30967722)
chr6 (239-299)||(6174273-6174333)
chr6 (664-758)||(1472398-1472492)
chr6 (568-605)||(1472341-1472378)
[»] chr8 (6 HSPs)
chr8 (9-343)||(9439375-9439710)
chr8 (9-343)||(9444095-9444430)
chr8 (561-761)||(9439921-9440121)
chr8 (23-79)||(4799315-4799371)
chr8 (568-605)||(24594367-24594404)
chr8 (664-758)||(24594424-24594518)
[»] chr7 (10 HSPs)
chr7 (11-289)||(16183636-16183905)
chr7 (11-297)||(30235043-30235334)
chr7 (11-228)||(8139969-8140183)
chr7 (573-763)||(2323956-2324146)
chr7 (11-192)||(8138465-8138645)
chr7 (19-164)||(5102606-5102749)
chr7 (11-121)||(36528420-36528529)
chr7 (566-756)||(22510209-22510398)
chr7 (664-758)||(7504696-7504790)
chr7 (568-605)||(7504639-7504676)
[»] scaffold0074 (2 HSPs)
scaffold0074 (9-289)||(27229-27500)
scaffold0074 (573-763)||(27877-28067)
[»] chr1 (4 HSPs)
chr1 (9-289)||(46191274-46191543)
chr1 (11-192)||(30697120-30697300)
chr1 (9-192)||(4130215-4130398)
chr1 (571-672)||(41413422-41413523)


Alignment Details
Target: chr5 (Bit Score: 728; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 728; E-Value: 0
Query Start/End: Original strand, 9 - 763
Target Start/End: Complemental strand, 41723450 - 41722695
Alignment:
Q  9 taggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaat 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41723450 taggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaat 41723351  T
Q  109 aaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctc 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  41723350 aaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctc 41723251  T
Q  209 tcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttt-ctctcactatctaaacaag 307  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  41723250 tcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaaacaag 41723151  T
Q  308 ctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccattttca 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41723150 ctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccattttca 41723051  T
Q  408 tttattaccatagataatagccaaactgccaaccaatttatgttgacaatgttggcaccgaaaatctgaatggtaaattgcaaagcccttttgtcaaaca 507  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  41723050 tttattaccatagataatagccaaactgccaaccaatttatgttgacaatgttggcaccgaaaatctgaatggtaaattgcaaaacccttttgtcaaaca 41722951  T
Q  508 tgtattactgccatgtgaaaacatatcaacaaaaggtgactttatggcttatgtgttcacacatgttcacaatctcccacttaaagtcacttttgtgagc 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41722950 tgtattactgccatgtgaaaacatatcaacaaaaggtgactttatggcttatgtgttcacacatgttcacaatctcccacttaaagtcacttttgtgagc 41722851  T
Q  608 ttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgaggatcgacaccatacaaacttatcagtgttgatcggctttgt 707  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  41722850 ttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgaggatcgacaccatacaaacttatcagcgttgatcggctttgt 41722751  T
Q  708 cattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccct 763  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41722750 cattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccct 41722695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 9 - 578
Target Start/End: Complemental strand, 41718724 - 41718154
Alignment:
Q  9 taggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaat 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41718724 taggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaat 41718625  T
Q  109 aaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctc 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  41718624 aaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctc 41718525  T
Q  209 tcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttt-ctctcactatctaaacaag 307  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  41718524 tcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaaacaag 41718425  T
Q  308 ctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccattttca 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41718424 ctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccattttca 41718325  T
Q  408 tttattaccatagataatagccaaactgccaaccaatttatgttgacaatgttggcaccgaaaatctgaatggtaaattgcaaagcccttttgtcaaaca 507  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  41718324 tttattaccatagataatagccaaactgccaaccaatttatgttgacaatgttggcaccgaaaatctgaatggtaaattgcaaaacccttttgtcaaaca 41718225  T
Q  508 tgtattactgccatgtgaaaacatatcaacaaaaggtgactttatggcttatgtgttcacacatgttcaca 578  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41718224 tgtattactgccatgtgaaaacatatcaacaaaaggtgactttatggcttatgtgttcacacatgttcaca 41718154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 9 - 344
Target Start/End: Complemental strand, 34360270 - 34359934
Alignment:
Q  9 taggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaat 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  34360270 taggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtagaaacccctcaacaaat 34360171  T
Q  109 aaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctc 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  34360170 aaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctc 34360071  T
Q  209 tcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatat-ttttctctcactatctaaacaag 307  Q
    |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||| |||||||||| |||||||||||||||||||||||    
T  34360070 tcttataaataggagaatactaactaacacaaactaggagaaatctcacaggagaaactaatttttctctctatattttttctctcactatctaaacaag 34359971  T
Q  308 ctttacttgttcttgtgttgttactgatttgggatga 344  Q
    |||||||||||||||||||||||||||||||||||||    
T  34359970 ctttacttgttcttgtgttgttactgatttgggatga 34359934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 25 - 344
Target Start/End: Complemental strand, 34352546 - 34352226
Alignment:
Q  25 aaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccac 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34352546 aaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccac 34352447  T
Q  125 ggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggaga 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  34352446 ggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggaga 34352347  T
Q  225 atacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatat-ttttctctcactatctaaacaagctttacttgttcttgt 323  Q
    |||| |||||||||||||||||||||| |||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  34352346 atactaactaacacaaactaggagaaatctcacaggagaaactaatttttctctctatattttttctctcactatctaaacaagctttacttgttcttgt 34352247  T
Q  324 gttgttactgatttgggatga 344  Q
    |||||||||||||||||||||    
T  34352246 gttgttactgatttgggatga 34352226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 282; E-Value: 1e-157
Query Start/End: Original strand, 9 - 344
Target Start/End: Original strand, 29585303 - 29585640
Alignment:
Q  9 taggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaat 108  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29585303 taggtatcagagtaacaaaatattatcatgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaat 29585402  T
Q  109 aaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctc 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  29585403 aaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaagagagtacaattaccactctc 29585502  T
Q  209 tcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttt-ctctcacta-tctaaacaa 306  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||| |||| ||||    
T  29585503 tcttataaataggagaatactaactaatacaaactaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactactctagacaa 29585602  T
Q  307 gctttacttgttcttgtgttgttactgatttgggatga 344  Q
    |||||||||||| |||||||||||||||||||||||||    
T  29585603 gctttacttgttgttgtgttgttactgatttgggatga 29585640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 570 - 763
Target Start/End: Complemental strand, 34359667 - 34359474
Alignment:
Q  570 atgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgaggat 669  Q
    |||||||||||||||||||||||||||||||||||||| | |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34359667 atgttcacaatctcccacttaaagtcacttttgtgagcattcaaagtatctctaccttgccaactccagttgctacgtttccaataggccatacgaggat 34359568  T
Q  670 cgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccct 763  Q
    |||||||||| |||||| |||| |||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| ||||| |||||||    
T  34359567 cgacaccatataaacttgtcagcgttgatcggctttgtcattacatccgctaggttatcattggtgtgaatcttttgcatatccacgcttccct 34359474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 9 - 412
Target Start/End: Original strand, 48701824 - 48702228
Alignment:
Q  9 taggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaat 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48701824 taggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaat 48701923  T
Q  109 aaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctc 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  48701924 aaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctc 48702023  T
Q  209 tcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctata-tttttctctcactatctaaacaag 307  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  48702024 tcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaaacaag 48702123  T
Q  308 ctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccattttca 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |  | || ||||||||| |||||| || ||    
T  48702124 ctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagccatgccccaaccaattgca 48702223  T
Q  408 tttat 412  Q
    |||||    
T  48702224 tttat 48702228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 9 - 412
Target Start/End: Original strand, 48697134 - 48697539
Alignment:
Q  9 taggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaat 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48697134 taggtaccagagtaacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaat 48697233  T
Q  109 aaggggaaaa-aaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactct 207  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  48697234 aaggggaaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactct 48697333  T
Q  208 ctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctata-tttttctctcactatctaaacaa 306  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  48697334 ctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaaacaa 48697433  T
Q  307 gctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccattttc 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||  |  | || ||||||||| |||||| || |    
T  48697434 gctttacttgttcttgtgttgttactgatttgggatgagtagaataatgcaagggacatgctatttatactagtgaaagagccatgccccaaccaattgc 48697533  T
Q  407 atttat 412  Q
    ||||||    
T  48697534 atttat 48697539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 13 - 342
Target Start/End: Complemental strand, 42266213 - 42265883
Alignment:
Q  13 taccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42266213 taccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagg 42266114  T
Q  113 ggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctctt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42266113 ggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctctt 42266014  T
Q  213 ataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatat-ttttctctcactatctaaacaagcttt 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  42266013 ataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaagctatttttcctctctatattttttctctcactatctaaacaagcttt 42265914  T
Q  312 acttgttcttgtgttgttactgatttgggat 342  Q
    |||||||||||||||||||||||||||||||    
T  42265913 acttgttcttgtgttgttactgatttgggat 42265883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 13 - 342
Target Start/End: Complemental strand, 42270932 - 42270602
Alignment:
Q  13 taccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42270932 taccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagg 42270833  T
Q  113 ggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctctt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42270832 ggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctctt 42270733  T
Q  213 ataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatat-ttttctctcactatctaaacaagcttt 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  42270732 ataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaagctatttttcctctctatattttttctctcactatctaaacaagcttt 42270633  T
Q  312 acttgttcttgtgttgttactgatttgggat 342  Q
    |||||||||||||||||||||||||||||||    
T  42270632 acttgttcttgtgttgttactgatttgggat 42270602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 12 - 343
Target Start/End: Original strand, 24520031 - 24520363
Alignment:
Q  12 gtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataag 111  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24520031 gtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataag 24520130  T
Q  112 gggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctct 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  24520131 gggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctct 24520230  T
Q  212 tataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctata-tttttctctcactatctaaacaagctt 310  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  24520231 tataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaaacaagctt 24520330  T
Q  311 tacttgttcttgtgttgttactgatttgggatg 343  Q
    |||||||||||||||||||||||||||||||||    
T  24520331 tacttgttcttgtgttgttactgatttgggatg 24520363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 9 - 412
Target Start/End: Original strand, 30945480 - 30945901
Alignment:
Q  9 taggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaat 108  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30945480 taggtatcagagtaacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaat 30945579  T
Q  109 aaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctc 208  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  30945580 aaggg-aaaaaatcacggggcaagagtagagaactttcactaagtggaagaaattacagaacctctctctaaatacaaggagagtacaattaccactctc 30945678  T
Q  209 tcttataaataggagaatacaa--actaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttt-ctctcacta-tcta--- 301  Q
    ||||||||||||||||||||||  |||||||| | ||||||||||||||||||||||||||| |||| |||||||||||||| ||||| ||| ||||       
T  30945679 tcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctctctattctacta 30945778  T
Q  302 --aacaa---------gctttac-ttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagcc 389  Q
      |||||         |  |||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |  | || ||||    
T  30945779 agaacaagtagttgttgtgttactttgttctggtgttgttactaatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagcc 30945878  T
Q  390 atgcctcaaccattttcatttat 412  Q
    ||||| |||||| || |||||||    
T  30945879 atgccccaaccaattgcatttat 30945901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 9 - 412
Target Start/End: Original strand, 30950186 - 30950607
Alignment:
Q  9 taggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaat 108  Q
    |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30950186 taggtaccagagtaacaaaatattatcacgcagctaaaataagataagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaat 30950285  T
Q  109 aaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctc 208  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  30950286 aaggg-aaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacagaacctctctctaaatacaaggaaagtacaattaccactctc 30950384  T
Q  209 tcttataaataggagaatacaa--actaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttt-ctctcacta-tcta--- 301  Q
    ||||||||||||||||||||||  |||||||| | ||||||||||||||||||||||||||| |||| |||||||||||||| ||||| ||| ||||       
T  30950385 tcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctctctattctacta 30950484  T
Q  302 --aacaa---------gctttac-ttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagcc 389  Q
      |||||         |  |||| ||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |  | || ||||    
T  30950485 agaacaagtagttgttgtgttactttgttatggtgttgttactaatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagcc 30950584  T
Q  390 atgcctcaaccattttcatttat 412  Q
    ||||| |||||| || |||||||    
T  30950585 atgccccaaccaattgcatttat 30950607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 9 - 289
Target Start/End: Complemental strand, 10427594 - 10427323
Alignment:
Q  9 taggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaat 108  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  10427594 taggtaccagagtaacagaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgcggaaacccctcaacaaat 10427495  T
Q  109 aaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattaccactct 207  Q
    ||||||||||||| |||||| || |||||| |||||||||||||||||||| ||||||| ||| |||||||||||||||||||||   ||||||| ||||    
T  10427494 aaggggaaaaaactacggggaaaaagtagataactttcactaagtggaagacaattacaagacttctctctaaatacaaggagagacaaattacc-ctct 10427396  T
Q  208 ctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatatttttc 289  Q
    |||||  |||||||||||||| |||        ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10427395 ctctt-gaaataggagaatactaac--------actaggagaaacctcacaggagaaactatatttcctctctatatttttc 10427323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 571 - 763
Target Start/End: Original strand, 48697661 - 48697853
Alignment:
Q  571 tgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgaggatc 670  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||    
T  48697661 tgttcacaatctcccacttaaagtcacttttgtgagctctcaaaatctctctaccttgccgacttcggttgctacgtttccaataggccatacgaggatc 48697760  T
Q  671 gacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccct 763  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48697761 gacaccatacaaacttatcagcgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccct 48697853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 571 - 763
Target Start/End: Original strand, 30946023 - 30946215
Alignment:
Q  571 tgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgaggatc 670  Q
    |||||||| |||||||||||||||||||||||||||||  ||||||||||||||||| || ||| | |||||||||||||||||||||||||||||||||    
T  30946023 tgttcacagtctcccacttaaagtcacttttgtgagctctcaaaatctctctaccttaccgacttcggttgctacgtttccaataggccatacgaggatc 30946122  T
Q  671 gacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccct 763  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30946123 gacaccatacaaacttatcagcgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccct 30946215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 561 - 761
Target Start/End: Complemental strand, 42270390 - 42270190
Alignment:
Q  561 tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggcca 660  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  | |||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  42270390 tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagtattcaaagtctctctaccttgccaactctagttgctacgtttccaataggcca 42270291  T
Q  661 tacgaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttc 760  Q
    ||| | ||||||||||||| |||||| ||||||||||||| |||||||||| |||||||||| |||||||| ||||||||||||||||| ||||| ||||    
T  42270290 tacaaagatcgacaccatataaacttgtcagtgttgatcgactttgtcattgcatctgctaggttatcattagtgtgaatcttctgcatatccacgcttc 42270191  T
Q  761 c 761  Q
    |    
T  42270190 c 42270190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 19 - 214
Target Start/End: Complemental strand, 48783031 - 48782850
Alignment:
Q  19 agtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaa 118  Q
    |||| ||||||||||||||||   |||||||||| ||||||||| |||||||||||||||||||||| |||||||||   |||||||||||| |||||||    
T  48783031 agtatcaaaatattatcacgcgattaaaataagaaacgagaaaacaggaactgaacacacaatattt-acgtggaaatttctcaacaaataaagggaaaa 48782933  T
Q  119 aaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttat 214  Q
    |  || ||||         ||||||||||||||||||||||||||| | |||||||||||||||||| |  |||||||||||||||||||||||||    
T  48782932 a--catgggg---------agaactttcactaagtggaagaaattagatgacctctctctaaatacatg--gagtacaattaccactctctcttat 48782850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 130 - 271
Target Start/End: Complemental strand, 1979375 - 1979240
Alignment:
Q  130 aagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaataca 229  Q
    ||||||||| |||||||| |||| ||||||||||||| |||||||||  |||| ||||||| ||| | |||||||||||||||||||| ||||||||       
T  1979375 aagagtagataactttcagtaagaggaagaaattacacgacctctct--aaatgcaaggagggtatatttaccactctctcttataaacaggagaat--- 1979281  T
Q  230 aactaacacaaactaggagaaacctcacaggagaaactattt 271  Q
     |||| ||| ||| |||||||||||||||   ||||||||||    
T  1979280 -actagcactaaccaggagaaacctcacatttgaaactattt 1979240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 59 - 157
Target Start/End: Complemental strand, 17248112 - 17248015
Alignment:
Q  59 aaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaa 157  Q
    ||||||| |||| || ||||||||||| || |||||| |||| || |||||||||||||||||||| ||  ||||||| |||||||||| |||||||||    
T  17248112 aaaagagaaactaaatacacaatattt-acatggaaatcccttaataaataaggggaaaaaaccaccggataagagtatagaactttcattaagtggaa 17248015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 30165968 - 30165900
Alignment:
Q  17 agagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattt 85  Q
    |||||||||||||| |||||| || ||||||||||| | ||||||| | ||| |||||||| |||||||    
T  30165968 agagtaacaaaataatatcacacaactaaaataagatatgagaaaaaatgaattgaacacataatattt 30165900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 36615362 - 36615438
Alignment:
Q  9 taggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattt 85  Q
    ||||||| ||||||| ||||||||||| | ||| |||||||||| | |||||||||| ||| ||||| ||| |||||    
T  36615362 taggtactagagtaataaaatattatcgcacagttaaaataagatatgagaaaagagaaaccgaacatacattattt 36615438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 72 - 110
Target Start/End: Complemental strand, 1979604 - 1979567
Alignment:
Q  72 aacacacaatattttacgtggaaacccctcaacaaataa 110  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  1979604 aacacacaatattt-acgtggaaacccctcaacaaataa 1979567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 664 - 758
Target Start/End: Complemental strand, 2003267 - 2003173
Alignment:
Q  664 gaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacact 758  Q
    |||||||||||||||  ||| || |||   ||||| | ||||||||| |||||||||| ||| || ||||||||||| |||||||| || |||||    
T  2003267 gaggatcgacaccatgtaaatttgtcaacattgattgactttgtcataacatctgctaaattgtctttggtgtgaattttctgcatatcaacact 2003173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 343; Significance: 0; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 15 - 412
Target Start/End: Original strand, 5198664 - 5199062
Alignment:
Q  15 ccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5198664 ccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggg 5198763  T
Q  115 aaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttat 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  5198764 aaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttat 5198863  T
Q  215 aaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctata-tttttctctcactatctaaacaagctttac 313  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  5198864 aaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaaacaagctttac 5198963  T
Q  314 ttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccattttcatttat 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |  | || ||||||||| |||||| || |||||||    
T  5198964 ttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagccatgccccaaccaattgcatttat 5199062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 17 - 289
Target Start/End: Complemental strand, 15603183 - 15602911
Alignment:
Q  17 agagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaa 116  Q
    ||||||| ||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15603183 agagtaagaaaatattatcacgcaattgaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaa 15603084  T
Q  117 aaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataa 216  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| || |||| |||||||||||| ||| |||| |||    
T  15603083 aaaaccacggggcaagagtagagaactttcactaagtagaagaaattacaagacctctctctaaatgcatggagtgtacaattaccattctatcttgtaa 15602984  T
Q  217 ataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatatttttc 289  Q
    |||||||||||| |||||||||  |||| ||||||||||| || | || ||| |||| || ||||||||||||    
T  15602983 ataggagaatactaactaacacttactaagagaaacctcatagaaaaatctaatttttctttctatatttttc 15602911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 150; E-Value: 7e-79
Query Start/End: Original strand, 9 - 169
Target Start/End: Complemental strand, 825793 - 825632
Alignment:
Q  9 taggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaat 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  825793 taggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaaccactcaacaaat 825694  T
Q  109 aaggggaa-aaaaccacggggcaagagtagagaactttcactaagtggaagaaattacagga 169  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  825693 aaggggaaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacagga 825632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 9 - 169
Target Start/End: Complemental strand, 830449 - 830288
Alignment:
Q  9 taggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaat 108  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  830449 taggtaccagagtaacaaaatattatcacgcagttaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaat 830350  T
Q  109 aaggggaa-aaaaccacggggcaagagtagagaactttcactaagtggaagaaattacagga 169  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  830349 aaggggaaaaaaaccacggggcaagagtggagaactttcactaagtggaagaaattacagga 830288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 569 - 761
Target Start/End: Complemental strand, 829958 - 829766
Alignment:
Q  569 catgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgagga 668  Q
    |||||||||||| ||||||||||||  |||||||||||| | |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  829958 catgttcacaatatcccacttaaagctacttttgtgagcattcaaagtctctctaccttgccaactccagttgctatgtttccaataggccatacgagga 829859  T
Q  669 tcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttcc 761  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||| ||||| |||||    
T  829858 tcgacaccatataaacttgtcagtgttgatcggctttgtcattacatctgctaggttatcattagtgtgaatcttctacatatccacgcttcc 829766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 13 - 274
Target Start/End: Complemental strand, 28716070 - 28715815
Alignment:
Q  13 taccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagg 112  Q
    ||||||||||||||||||||||||| ||  ||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||  ||||||||    
T  28716070 taccagagtaacaaaatattatcacacatttaaaataagagacgacaaaagaggaattgaacacacaatattt-acgtggaaacccctcattaaataagg 28715972  T
Q  113 ggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctctt 212  Q
    ||||||| ||||  |  |||| |||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||  | || |    
T  28715971 ggaaaaa-ccacaagagaagaatagagaactttcacaaagtggaagaaattacaggacatctctctaaatgcaaggagagtacaattaccaccgtttcct 28715873  T
Q  213 ataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttc 274  Q
    ||||||||||||||    |||||||| | ||||||||||||| ||| |||||||||||||||    
T  28715872 ataaataggagaat----actaacactacctaggagaaaccttacaagagaaactatttttc 28715815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 123; E-Value: 9e-63
Query Start/End: Original strand, 15 - 285
Target Start/End: Original strand, 30396920 - 30397179
Alignment:
Q  15 ccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggg 114  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||| ||||||||||||||||||||||     
T  30396920 ccagagtagcaaaatattatcacgcagctaaaataagagacgagaaaagacgaactgaacacac-atatttt-cgttgaaacccctcaacaaataaggga 30397017  T
Q  115 aaaaaaccacggggcaagagtagagaac-tttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctctta 213  Q
    |||||| ||| |||| |||||||||||| |||||||||||||||||||||||| ||||||| |||| ||||||||||||   ||||||| |||| | ||     
T  30397018 aaaaaatcacagggcgagagtagagaacttttcactaagtggaagaaattacaagacctctttctatatacaaggagagacaaattacc-ctctatgtt- 30397115  T
Q  214 taaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatatt 285  Q
     |||||||||||||  |||        ||||||||||| ||||||||||||||||| |||||||||||||||    
T  30397116 gaaataggagaatattaac--------actaggagaaatctcacaggagaaactatatttcctctctatatt 30397179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 569 - 758
Target Start/End: Complemental strand, 28715550 - 28715361
Alignment:
Q  569 catgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgagga 668  Q
    |||||||||||||||||||||||||  || ||| | ||  | |||||||||||||||| ||||||| | |||||||| ||| |||||||||||| |||||    
T  28715550 catgttcacaatctcccacttaaagctacattttttagaattcaaaatctctctacctcgccaacttccgttgctacattttcaataggccatatgagga 28715451  T
Q  669 tcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacact 758  Q
    ||||||| ||| |||||| ||||  ||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||| | ||||||    
T  28715450 tcgacactatagaaacttgtcagcattgatcgactttgtcattacatctgctaggttatcattggtgtgaatcttatgcatattcacact 28715361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 568 - 761
Target Start/End: Original strand, 13840763 - 13840960
Alignment:
Q  568 acatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacg--- 664  Q
    ||||||| |||||||| ||||||||   ||||||||||||||| ||||| ||||| ||||||||||||  ||||||| |||||||||||| |||||        
T  13840763 acatgtttacaatctctcacttaaatctacttttgtgagcttctaaaatttctctgccttgccaactcttgttgctatgtttccaataggtcatacttcc 13840862  T
Q  665 -aggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttcc 761  Q
     ||||||||| |||||||||||||| ||  |||||||| |||||||  ||||| | ||| |||||| | || |||||||||||||  |||| ||||||    
T  13840863 caggatcgacgccatacaaacttattagcattgatcggttttgtcaccacatccgttaggttatcacttgtctgaatcttctgcacatccatacttcc 13840960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 75 - 226
Target Start/End: Original strand, 13843865 - 13844014
Alignment:
Q  75 acacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctct 174  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||   |  ||  || |||| |||| ||||| ||||||||||||||||||||||| ||    
T  13843865 acacaatattt-acgtggaaacccctcaacaaataaggagaaaaatt-ataggttaaaagtatagaattttcattaagtggaagaaattacaggacccct 13843962  T
Q  175 ctctaaatacaaggagagtacaattaccactctctcttataaataggagaat 226  Q
     | |||||||||| ||| || |||||||||||| | ||| ||||||||||||    
T  13843963 ttataaatacaagaagaataaaattaccactctattttaaaaataggagaat 13844014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 19 - 166
Target Start/End: Original strand, 31592923 - 31593068
Alignment:
Q  19 agtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaa 118  Q
    ||||||| ||||||||||| ||| || ||||||||||||||||||||||||  |||| |||||| |||||||||||| | ||||| |||||| |  ||||    
T  31592923 agtaacataatattatcacacagatagaataagagacgagaaaagaggaacataacatacaataatttacgtggaaatctctcaataaataa-gaaaaaa 31593021  T
Q  119 aaccacggggcaagagtagagaactttcactaagtggaagaaattaca 166  Q
    ||||||  |  ||||||||||||||||||||||  | |||||||||||    
T  31593022 aaccac-agataagagtagagaactttcactaaccgaaagaaattaca 31593068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 101 - 228
Target Start/End: Complemental strand, 8004292 - 8004167
Alignment:
Q  101 caacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaatta 200  Q
    ||||||||||| ||||||| | |||||| | || |||| |||||||||| | |||||||||||| |  |||||||| |||||  ||| ||||||||||||    
T  8004292 caacaaataagaggaaaaa-caacggggtatgactagaaaactttcactgaatggaagaaattataaaacctctctttaaatgtaagaagagtacaatta 8004194  T
Q  201 ccactctctcttataaataggagaatac 228  Q
     |||||||||||||||||||||||||||    
T  8004193 -cactctctcttataaataggagaatac 8004167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 11 - 228
Target Start/End: Original strand, 13840245 - 13840456
Alignment:
Q  11 ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa 110  Q
    ||||||||| |||||||||||||||||| |  || ||||| ||| |||||| ||||||| |||||||  |||||| || ||  ||  |||||||||| ||    
T  13840245 ggtaccagaataacaaaatattatcacgtaattataataaaagatgagaaaggaggaaccgaacaca--atattt-acatgagaattcctcaacaaacaa 13840341  T
Q  111 ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctc 210  Q
    |||| ||||  || || ||||||||||| || ||| || ||||  || ||||||||  ||||||||||||||| ||||||||||||||||| | ||||||    
T  13840342 gggggaaaa--catggagcaagagtagaaaatttttaccaagtaaaa-aaattacaaaacctctctctaaatataaggagagtacaattacaattctctc 13840438  T
Q  211 ttataaataggagaatac 228  Q
    ||| |||||  |||||||    
T  13840439 ttaaaaataaaagaatac 13840456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 219 - 298
Target Start/End: Complemental strand, 830291 - 830209
Alignment:
Q  219 aggagaatacaaac--taacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttt-ctctcactat 298  Q
    ||||||||||||||  |||||| | ||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||    
T  830291 aggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactat 830209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 219 - 298
Target Start/End: Complemental strand, 825635 - 825553
Alignment:
Q  219 aggagaatacaaac--taacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttt-ctctcactat 298  Q
    ||||||||||||||  |||||| | |||||||||||||| |||||||||||| |||| |||||||||||||| ||||||||||    
T  825635 aggagaatacaaacactaacactacctaggagaaacctcgcaggagaaactaatttttctctctatatttttcctctcactat 825553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 26 - 141
Target Start/End: Original strand, 12175768 - 12175881
Alignment:
Q  26 aaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacg 125  Q
    ||||||||||||||| ||||||||| ||| || |||| || || |||||||||||||||||  ||||||||  ||||| ||||||  ||||||||| |      
T  12175768 aaatattatcacgcaactaaaataaaagatgataaaaaagaaattgaacacacaatatttt-tgtggaaacatctcaataaataa-tggaaaaaacaatt 12175865  T
Q  126 gggcaagagtagagaa 141  Q
    || |||||||||||||    
T  12175866 ggacaagagtagagaa 12175881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 9358158 - 9358207
Alignment:
Q  21 taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaact 70  Q
    |||| ||||||||| |||||||||||| || ||||||||||||| |||||    
T  9358158 taaccaaatattattacgcagctaaaacaacagacgagaaaagaagaact 9358207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 176
Target Start/End: Complemental strand, 42117876 - 42117769
Alignment:
Q  67 aactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 166  Q
    ||||||||| ||||||||| |||| |||||| |||||  |||||||||| ||||||||| | ||| |||||| |||||||| |||  |  |||||||| |    
T  42117876 aactgaacatacaatattt-acgtagaaacctctcaattaataagggga-aaaaccacgagacaaaagtagataactttcattaaacgagagaaattata 42117779  T
Q  167 ggacctctct 176  Q
     |||||||||    
T  42117778 agacctctct 42117769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 9 - 343
Target Start/End: Original strand, 5823278 - 5823613
Alignment:
Q  9 taggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaat 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5823278 taggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaat 5823377  T
Q  109 aaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctc 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  5823378 aaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctc 5823477  T
Q  209 tcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctata-tttttctctcactatctaaacaag 307  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  5823478 tcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaaacaag 5823577  T
Q  308 ctttacttgttcttgtgttgttactgatttgggatg 343  Q
    ||||||||||||||||||||||||||||||||||||    
T  5823578 ctttacttgttcttgtgttgttactgatttgggatg 5823613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 9 - 344
Target Start/End: Original strand, 5818516 - 5818852
Alignment:
Q  9 taggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaat 108  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  5818516 taggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaactaat 5818615  T
Q  109 aaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctc 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  5818616 aaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctc 5818715  T
Q  209 tcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctata-tttttctctcactatctaaacaag 307  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  5818716 tcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaaacaag 5818815  T
Q  308 ctttacttgttcttgtgttgttactgatttgggatga 344  Q
    |||||||||||||||||||||||||||||||||||||    
T  5818816 ctttacttgttcttgtgttgttactgatttgggatga 5818852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 9 - 412
Target Start/End: Original strand, 2817266 - 2817658
Alignment:
Q  9 taggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaat 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2817266 taggtaccagagtaacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaat 2817365  T
Q  109 aaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattacca--ctc 206  Q
    || ||||||||||||| ||||||||||| |||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||  |||    
T  2817366 aa-gggaaaaaaccacagggcaagagtaaagaactctcactaagtggaagaaattacaagaactctctctaaatacaaggagagtacaatcaccactctc 2817464  T
Q  207 tctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctata-tttttctctcacta-tctaaac 304  Q
    |||||||||||||||||||||| |||||| |||||||              |||||||||||||||||||||||||| ||||||||||| ||  ||||||    
T  2817465 tctcttataaataggagaatactaactaatacaaact--------------aggagaaactatttttcctctctatattttttctctcattaccctaaac 2817550  T
Q  305 aagctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccattt 404  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |  | || ||||||||| |||||| ||    
T  2817551 aagttttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatgtatactagtgaaagagccatgccccaaccaatt 2817650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 9 - 298
Target Start/End: Complemental strand, 54546197 - 54545906
Alignment:
Q  9 taggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaat 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  54546197 taggtaccagagtaacaaaatattatcacgcagctaaaataagagatgagaaaagaggaactgaacatacaatattt-acgtggaaacccctcaacaaat 54546099  T
Q  109 aaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctc 208  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  54546098 aaggggaaaaaaccacggggctagagtagagaactttcactaagtggatgaaattacaggacctctctctaactacaaggagagtacaattaccactctc 54545999  T
Q  209 tcttataaataggagaatacaa--actaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttt-ctctcactat 298  Q
    ||||||||||||||||||||||  |||||||| | ||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||    
T  54545998 tcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactat 54545906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 561 - 761
Target Start/End: Complemental strand, 54545632 - 54545432
Alignment:
Q  561 tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggcca 660  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | ||||  |||||||||||||||||| ||||||||| |||||||||||||||    
T  54545632 tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcattcaaagcctctctaccttgccaacttcagttgctatgtttccaataggcca 54545533  T
Q  661 tacgaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttc 760  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| ||||    
T  54545532 tacgaggatcgacaccatataaacttgtcagtgttgatcggctttgtcattacatctgctaggttatcattagtgtgaatcttctgcatatccacgcttc 54545433  T
Q  761 c 761  Q
    |    
T  54545432 c 54545432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 558 - 763
Target Start/End: Original strand, 5819102 - 5819307
Alignment:
Q  558 atgtgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaatagg 657  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| | |||| | ||||||| ||||||||| ||||||||||||||||||||||    
T  5819102 atgtgttcacacatgttcacaatctcccacttaaagttacttttgtgagcattcaaagtttctctactttgccaacttcagttgctacgtttccaatagg 5819201  T
Q  658 ccatacgaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacac 757  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||| ||||| ||||| |    
T  5819202 ccatacgaggatcgacgccatataaacttgtcagtgttgatcggctttgtcattacaactgctaggttatcattagtgtgaatcttttgcatatccacgc 5819301  T
Q  758 ttccct 763  Q
    ||||||    
T  5819302 ttccct 5819307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 9 - 159
Target Start/End: Original strand, 24659139 - 24659287
Alignment:
Q  9 taggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaat 108  Q
    ||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  24659139 taggtaccagagtaataaaatattatcacacagctaaaataagagatgagaaaagaggaactgaacacacaacattttacgtggaaacccctcaacaaat 24659238  T
Q  109 aaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga 159  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  24659239 aaggggaaaaaaccacggggcaagagt--agaactttcactaagtggaaga 24659287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 14 - 120
Target Start/End: Complemental strand, 4579360 - 4579254
Alignment:
Q  14 accagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggg 113  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4579360 accagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggg 4579261  T
Q  114 gaaaaaa 120  Q
    |||||||    
T  4579260 gaaaaaa 4579254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 31204781 - 31204950
Alignment:
Q  20 gtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaa 119  Q
    |||||||||||||| ||||||| ||||| |||||| || |||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||    
T  31204781 gtaacaaaatattagcacgcagttaaaagaagagatga-aaaagaggaactgaactcacaatattt-acgtggaaacccctcaacaaataagaggaaaaa 31204878  T
Q  120 accacgg-ggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagag 192  Q
    | ||||| ||||| ||||||||||||||||||||||| | ||||||||  ||  ||||||||||| ||||||||    
T  31204879 atcacggaggcaatagtagagaactttcactaagtgggaaaaattacaaaac--ctctctaaatataaggagag 31204950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 159 - 289
Target Start/End: Original strand, 24671173 - 24671293
Alignment:
Q  159 aaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcaca 258  Q
    |||||||| ||| |||||||||||||||||||||   ||||||| |||||||||  |||||||||||||| |||        ||||||||||||||||||    
T  24671173 aaattacaagacttctctctaaatacaaggagagacaaattacc-ctctctcttg-aaataggagaatactaac--------actaggagaaacctcaca 24671262  T
Q  259 ggagaaactatttttcctctctatatttttc 289  Q
    ||||||||||| |||||||||||||||||||    
T  24671263 ggagaaactatatttcctctctatatttttc 24671293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 44 - 201
Target Start/End: Complemental strand, 35977258 - 35977103
Alignment:
Q  44 aaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtaga-gaac 142  Q
    ||||||||||  |||||||||| || |||||| ||||||||| ||||  ||| || |||||| |||  ||||||||  |||  |||||||||| | ||      
T  35977258 aaaataagaggtgagaaaagagaaattgaacaaacaatattt-acgtaaaaaaccatcaacatata--gggaaaaactcacttggcaagagtaaaagagt 35977162  T
Q  143 tttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattac 201  Q
    ||||||||||||||| |||||||| ||| ||||||||||||||||||||| ||||||||    
T  35977161 tttcactaagtggaaaaaattacaagacttctctctaaatacaaggagagaacaattac 35977103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 172 - 289
Target Start/End: Complemental strand, 4579241 - 4579134
Alignment:
Q  172 tctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactattt 271  Q
    |||||||||||||||||||||   ||||||| ||||||| |  |||||||||||||| ||||        ||| |||||||||||||||||||||||| |    
T  4579241 tctctctaaatacaaggagagacaaattacc-ctctctcgtg-aaataggagaatactaact--------ctatgagaaacctcacaggagaaactatat 4579152  T
Q  272 ttcctctctatatttttc 289  Q
    ||||||||||||||||||    
T  4579151 ttcctctctatatttttc 4579134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 568 - 605
Target Start/End: Complemental strand, 42589389 - 42589352
Alignment:
Q  568 acatgttcacaatctcccacttaaagtcacttttgtga 605  Q
    |||| |||||||||||||||||||||||||||||||||    
T  42589389 acatcttcacaatctcccacttaaagtcacttttgtga 42589352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 317; Significance: 1e-178; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 9 - 344
Target Start/End: Original strand, 26976134 - 26976470
Alignment:
Q  9 taggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaat 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26976134 taggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaat 26976233  T
Q  109 aaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctc 208  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  26976234 aaggggaaaaaaccaaggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctc 26976333  T
Q  209 tcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctata-tttttctctcactatctaaacaag 307  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  26976334 tcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaaacaag 26976433  T
Q  308 ctttacttgttcttgtgttgttactgatttgggatga 344  Q
    |||||||||||||||||||||||||||||||||||||    
T  26976434 ctttacttgttcttgtgttgttactgatttgggatga 26976470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 9 - 343
Target Start/End: Complemental strand, 1235015 - 1234680
Alignment:
Q  9 taggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaat 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1235015 taggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaat 1234916  T
Q  109 aaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctc 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  1234915 aaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctc 1234816  T
Q  209 tcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatat-ttttctctcactatctaaacaag 307  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  1234815 tcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaaacaag 1234716  T
Q  308 ctttacttgttcttgtgttgttactgatttgggatg 343  Q
    ||||||||||||||||||||||||||||||||||||    
T  1234715 ctttacttgttcttgtgttgttactgatttgggatg 1234680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 9 - 342
Target Start/End: Original strand, 27873993 - 27874327
Alignment:
Q  9 taggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaat 108  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27873993 taggtaccagagtaacaaaatattatcacgcatctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaat 27874092  T
Q  109 aaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctc 208  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27874093 aaagggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctc 27874192  T
Q  209 tcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctata-tttttctctcactatctaaacaag 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  27874193 tcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaagctatttttcctctctatattttttctctcactatctaaacaag 27874292  T
Q  308 ctttacttgttcttgtgttgttactgatttgggat 342  Q
    |||||||||||||||||||||||||||||||||||    
T  27874293 ctttacttgttcttgtgttgttactgatttgggat 27874327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 9 - 412
Target Start/End: Original strand, 27878712 - 27879134
Alignment:
Q  9 taggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaat 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27878712 taggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaat 27878811  T
Q  109 aaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27878812 aaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctc 27878911  T
Q  209 tcttataaataggagaatacaa--actaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttt-ctctcacta-tcta--- 301  Q
    ||||||||||||||||||||||  |||||||| | ||||||||||||||||||||||||||| |||| |||||||||||||| ||||| ||| ||||       
T  27878912 tcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctctctattctacta 27879011  T
Q  302 --aacaa---------gctttac-ttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagcc 389  Q
      |||||         |  |||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |  | || ||||    
T  27879012 agaacaagtagttgttgtgttactttgttctggtgttgttactaatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagcc 27879111  T
Q  390 atgcctcaaccattttcatttat 412  Q
    ||||| |||||| || |||||||    
T  27879112 atgccccaaccaattgcatttat 27879134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 9 - 289
Target Start/End: Complemental strand, 18968191 - 18967920
Alignment:
Q  9 taggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaat 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  18968191 taggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaatacataatattttacgtggaaacccctcaacaaat 18968092  T
Q  109 aaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattaccactct 207  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||| |||||||||||||||||||||   ||||| | ||||    
T  18968091 aaggggaaaaaaccacggggcaagagtagaaaactttcactaagtggaagacaattacaagacttctctctaaatacaaggagagacaaattagc-ctct 18967993  T
Q  208 ctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatatttttc 289  Q
    ||| |  |||||||||||||| |||        |||||||||||||||||| |||||||||| |||||||| ||||||||||    
T  18967992 ctcat-gaaataggagaatactaac--------actaggagaaacctcacaagagaaactatatttcctctttatatttttc 18967920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 9 - 271
Target Start/End: Complemental strand, 30986826 - 30986563
Alignment:
Q  9 taggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaa---cccctcaaca 105  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||   ||||||||||    
T  30986826 taggtatcagagtaacaaaatattatcacgtagctaaaataagagacgagaaaagaggaactgaacgcacaatattt-acgtggaaagtacccctcaaca 30986728  T
Q  106 aataaggggaaaaaa--ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattacca 203  Q
    |||||||  ||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  30986727 aataaggaaaaaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattgcaggacctctctctaaatgcaaggagagtacaattacca 30986628  T
Q  204 ctctctcttataaataggagaatacaaactaacacaaactaggagaaacctca-caggagaaactattt 271  Q
    ||||||||| ||||||| |||||    ||| |||| | |||||||||||||||  ||||||||||||||    
T  30986627 ctctctcttgtaaatagaagaat----actgacactacctaggagaaacctcatgaggagaaactattt 30986563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 558 - 763
Target Start/End: Original strand, 26976720 - 26976925
Alignment:
Q  558 atgtgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaatagg 657  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | |||| | ||||||| ||||||||| ||||||||||||||||||||||    
T  26976720 atgtgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcattcaaagtttctctactttgccaacttcagttgctacgtttccaatagg 26976819  T
Q  658 ccatacgaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacac 757  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||| ||||| |    
T  26976820 ccatacgaggatcgacaccatataaacttgtcagtgttgatcggctttgtcattacatctgctaggttatcattagtgtgaatcttttgcatatccacgc 26976919  T
Q  758 ttccct 763  Q
    ||||||    
T  26976920 ttccct 26976925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 561 - 761
Target Start/End: Original strand, 27874539 - 27874739
Alignment:
Q  561 tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggcca 660  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  | |||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  27874539 tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagtattcaaagtctctctaccttgccaactctagttgctacgtttccaataggcca 27874638  T
Q  661 tacgaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttc 760  Q
    ||| | ||||||||||||| |||||| ||||||||||||| |||||||||| |||||||||| |||||||| ||||||||||||||||| ||||| ||||    
T  27874639 tacaaagatcgacaccatataaacttgtcagtgttgatcgactttgtcattgcatctgctaggttatcattagtgtgaatcttctgcatatccacgcttc 27874738  T
Q  761 c 761  Q
    |    
T  27874739 c 27874739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 52 - 288
Target Start/End: Complemental strand, 30966923 - 30966689
Alignment:
Q  52 agacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaa-aaaaccacggggcaagagtagagaactttcacta 150  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| || |||| |||||||||||||||||||||||||||||    
T  30966923 agacgagaaaagaggaactgaacacacaatattt-acgtggaaacccatcaacaaataagggaaataaaatcacggggcaagagtagagaactttcacta 30966825  T
Q  151 agtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaa 250  Q
    ||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||    ||| |  | | |||||||||    
T  30966824 agtggaagaaattgcagaacctctctctaaatgcaaggagagtacaattaccactctctcttgtaaatagaagaat----actgaggctacctaggagaa 30966729  T
Q  251 acctcac-aggagaaactattt-ttcctctctatattttt 288  Q
    ||||||| || ||||||||||| || ||||||||||||||    
T  30966728 acctcacaagtagaaactatttctttctctctatattttt 30966689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 573 - 763
Target Start/End: Complemental strand, 18967543 - 18967353
Alignment:
Q  573 ttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgaggatcga 672  Q
    |||||||||||||||||||||  ||||||| |||||||||||||||||||||||| || | ||  ||||||| |||| |||||||||||| |||||||||    
T  18967543 ttcacaatctcccacttaaagctacttttgcgagcttccaaaatctctctaccttacccattcatgttgctatgttttcaataggccataggaggatcga 18967444  T
Q  673 caccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccct 763  Q
    ||||||| |||||| ||||  ||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18967443 caccatataaacttgtcagcattgattggttttgtcatcacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccct 18967353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 11 - 197
Target Start/End: Complemental strand, 21966860 - 21966677
Alignment:
Q  11 ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa 110  Q
    ||||||| |||||| ||| ||||||||||||||||| ||| | | ||||||||||||||| |||| | ||||||| | ||||||||||||||| ||||||    
T  21966860 ggtaccaaagtaacgaaacattatcacgcagctaaa-taacatatgagaaaagaggaactaaacataaaatattt-atgtggaaacccctcaataaataa 21966763  T
Q  111 ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaa 197  Q
     |||||||| | | ||||||||||||||||||||||||||| |||||||||||| | ||||||||||||| | ||| ||||||||||    
T  21966762 agggaaaaatc-atggggcaagagtagagaactttcactaaatggaagaaattataagacctctctctaatttcaaagagagtacaa 21966677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 25 - 174
Target Start/End: Original strand, 23012520 - 23012667
Alignment:
Q  25 aaaatattatcacgcagctaaaataagagacgag-aaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaacca 123  Q
    |||||||||||||||| ||||||||||||||||| |||||| ||| |||||||||| || ||||||||||||| | || |||||| | ||| ||||||||    
T  23012520 aaaatattatcacgcaactaaaataagagacgagaaaaagaagaattgaacacacatta-tttacgtggaaactcgtc-acaaattaaggggaaaaacca 23012617  T
Q  124 cggggcaagagtagagaactttcactaagtggaagaaattacaggacctct 174  Q
      |||||||||||||||||||||||||||||  ||||||| || |||||||    
T  23012618 -tgggcaagagtagagaactttcactaagtgagagaaatttcaagacctct 23012667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 570 - 686
Target Start/End: Complemental strand, 21966604 - 21966493
Alignment:
Q  570 atgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactcc-agttgctacgtttccaataggccatacgagga 668  Q
    ||||||||||| ||||||||| || ||||||||| || || ||||||||||||||||||||||||||   |||||||||||| |      ||||||||||    
T  21966604 atgttcacaatatcccacttacagccacttttgtaagatttcaaaatctctctaccttgccaactccttattgctacgtttcaa------catacgagga 21966511  T
Q  669 tcgacaccatacaaactt 686  Q
    ||||||||||||||||||    
T  21966510 tcgacaccatacaaactt 21966493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 570 - 630
Target Start/End: Complemental strand, 30968629 - 30968569
Alignment:
Q  570 atgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgcc 630  Q
    ||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  30968629 atgttcacaatctcccacttaaagtcacttttgtgagcactcaaaatctctctaccttgcc 30968569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 30967722 - 30967674
Alignment:
Q  9 taggtaccagagtaacaaaatattatcacgcagctaaaataagagacga 57  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  30967722 taggtaccagagtaacaaaatattatcaagcagctaaaataagagacga 30967674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 239 - 299
Target Start/End: Original strand, 6174273 - 6174333
Alignment:
Q  239 aaactaggagaaacctcacaggagaaactatttttcctctctatatttttctctcactatc 299  Q
    ||||||| |||| ||| | |||||||||||| |||||| ||||||||||||||||||||||    
T  6174273 aaactagaagaatccttataggagaaactatatttcctttctatatttttctctcactatc 6174333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 664 - 758
Target Start/End: Original strand, 1472398 - 1472492
Alignment:
Q  664 gaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacact 758  Q
    |||||||||||||||  ||| || ||||  ||||| | ||||||||| |||||||||| ||| || ||||||||||| |||||||| || |||||    
T  1472398 gaggatcgacaccatgtaaatttgtcagcattgattgactttgtcataacatctgctaaattgtctttggtgtgaattttctgcatatcaacact 1472492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 568 - 605
Target Start/End: Original strand, 1472341 - 1472378
Alignment:
Q  568 acatgttcacaatctcccacttaaagtcacttttgtga 605  Q
    |||| |||||||||||||||||||||||||||||||||    
T  1472341 acatcttcacaatctcccacttaaagtcacttttgtga 1472378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 316; Significance: 1e-178; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 9 - 343
Target Start/End: Original strand, 9439375 - 9439710
Alignment:
Q  9 taggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaat 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9439375 taggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaat 9439474  T
Q  109 aaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctc 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  9439475 aaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctc 9439574  T
Q  209 tcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctata-tttttctctcactatctaaacaag 307  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  9439575 tcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaaacaag 9439674  T
Q  308 ctttacttgttcttgtgttgttactgatttgggatg 343  Q
    ||||||||||||||||||||||||||||||||||||    
T  9439675 ctttacttgttcttgtgttgttactgatttgggatg 9439710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 9 - 343
Target Start/End: Original strand, 9444095 - 9444430
Alignment:
Q  9 taggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaat 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9444095 taggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaat 9444194  T
Q  109 aaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctc 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  9444195 aaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctc 9444294  T
Q  209 tcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctata-tttttctctcactatctaaacaag 307  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  9444295 tcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaaacaag 9444394  T
Q  308 ctttacttgttcttgtgttgttactgatttgggatg 343  Q
    ||||||||||||||||||||||||||||||||||||    
T  9444395 ctttacttgttcttgtgttgttactgatttgggatg 9444430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 561 - 761
Target Start/End: Original strand, 9439921 - 9440121
Alignment:
Q  561 tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggcca 660  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  | |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  9439921 tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagtattcaaagtctctctaccttgccaactccagttgctacgtttccaataggcca 9440020  T
Q  661 tacgaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttc 760  Q
    ||||| ||||||||||||| |||||| ||||||||||||| |||||||||| |||||||||| |||||||| ||||||||||||||||| ||||| ||||    
T  9440021 tacgaagatcgacaccatataaacttgtcagtgttgatcgactttgtcattgcatctgctaggttatcattagtgtgaatcttctgcatatccacgcttc 9440120  T
Q  761 c 761  Q
    |    
T  9440121 c 9440121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 4799371 - 4799315
Alignment:
Q  23 acaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacaca 79  Q
    ||||||||||||||| | |||||||||||||| |||||||||| || ||||||||||    
T  4799371 acaaaatattatcacactgctaaaataagagatgagaaaagagaaattgaacacaca 4799315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 568 - 605
Target Start/End: Original strand, 24594367 - 24594404
Alignment:
Q  568 acatgttcacaatctcccacttaaagtcacttttgtga 605  Q
    |||| |||||||||||||||||||||||||||||||||    
T  24594367 acatcttcacaatctcccacttaaagtcacttttgtga 24594404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 664 - 758
Target Start/End: Original strand, 24594424 - 24594518
Alignment:
Q  664 gaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacact 758  Q
    ||||||| |||||||  ||| || ||||  ||||| | ||||||||| |||||||||| ||| || ||||||||||| |||||||| || |||||    
T  24594424 gaggatctacaccatgtaaatttgtcagcattgattgactttgtcataacatctgctaaattgtctttggtgtgaattttctgcatatcaacact 24594518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 11 - 289
Target Start/End: Original strand, 16183636 - 16183905
Alignment:
Q  11 ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16183636 ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa 16183735  T
Q  111 ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattaccactctct 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||   ||||||| ||||||    
T  16183736 ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagacaattacaagacctctctctaaatacaaggagagacaaattacc-ctctct 16183834  T
Q  210 cttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatatttttc 289  Q
    |||  |||||||||||||| |||        ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  16183835 ctt-gaaataggagaatactaac--------actaggagaaacctcacaggagaaactatatttcctctctatatttttc 16183905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 150; E-Value: 7e-79
Query Start/End: Original strand, 11 - 297
Target Start/End: Complemental strand, 30235334 - 30235043
Alignment:
Q  11 ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa 110  Q
    |||||||||||| ||||||||||| || |||||||||||| | | ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  30235334 ggtaccagagtagcaaaatattattacacagctaaaataaaaaatgagaaaagaggaactgaacacacaata-tttacgtggaaacccctcaacgaataa 30235236  T
Q  111 gggg-aaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctct-ctaaatacaaggagagtacaattaccactctc 208  Q
    |||| |||||||||||||  ||||||||| |||||||| ||| | |||||||||||||||||||||| |||  || ||||||||||||||||||||||||    
T  30235235 ggggaaaaaaaccacgggataagagtagaaaactttcaataactagaagaaattacaggacctctctcctatttataaggagagtacaattaccactctc 30235136  T
Q  209 tcttataaataggagaatacaa--actaacacaaactaggagaaacctca-caggagaaactatttttcctctctatattttt-ctctcacta 297  Q
    ||||||||||||||||||||||  |||||||| |  || |||||||||||  ||||||||||| |||| |||||||||||||| |||||||||    
T  30235135 tcttataaataggagaatacaaacactaacactacgtaagagaaacctcataaggagaaactaatttttctctctatatttttcctctcacta 30235043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 11 - 228
Target Start/End: Original strand, 8139969 - 8140183
Alignment:
Q  11 ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa 110  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||| |||||||||| | ||||||||||||||||||||||    
T  8139969 ggtaccagagtaacaaaatattatcacacagctaaaataagagatgagaaaagagaaactgaacgcacaatattt-atgtggaaacccctcaacaaataa 8140067  T
Q  111 ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctc 210  Q
    ||||| ||||||| |||| |||| |||| |||||||||| |||||||||||||| | ||||||||||| |||||||||||||   ||||||| |||||||    
T  8140068 ggggagaaaaccatggggtaagattagaaaactttcactcagtggaagaaattataagacctctctcttaatacaaggagagacaaattacc-ctctctc 8140166  T
Q  211 ttataaataggagaatac 228  Q
    ||  ||||||||||||||    
T  8140167 tt-gaaataggagaatac 8140183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 573 - 763
Target Start/End: Original strand, 2323956 - 2324146
Alignment:
Q  573 ttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgaggatcga 672  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||  ||||||||||||||||||| |||||||| ||||||    
T  2323956 ttcacaatctcccacttaaagccacttttgtgagcttccaaaatctctctaccttgcccattcatgttgctacgtttccaatagtccatacgatgatcga 2324055  T
Q  673 caccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccct 763  Q
    ||||||| ||||||   ||  ||||| ||||||||||| |||||||||||  ||||||||||||| ||||||||||| |||||||||||||    
T  2324056 caccatataaacttggtagcattgattggctttgtcatcacatctgctagggtatcattggtgtggatcttctgcatatccacacttccct 2324146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 11 - 192
Target Start/End: Original strand, 8138465 - 8138645
Alignment:
Q  11 ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa 110  Q
    |||| ||||||| |||| ||||||||||||||||||||||||||||||||||||  |||| |||||||| || || | |||||||||||| |||||| ||    
T  8138465 ggtagcagagtatcaaagtattatcacgcagctaaaataagagacgagaaaagaaaaacttaacacacagtaatt-atgtggaaaccccttaacaaacaa 8138563  T
Q  111 ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagag 192  Q
    ||||| ||||||||| ||||||| ||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||    
T  8138564 ggggagaaaaccacgaggcaagattagagaactttcactaaatggaagaaattacaagacctccctctaaatacaaggagag 8138645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 5102606 - 5102749
Alignment:
Q  19 agtaacaaaatattatcacgcagctaaaataagagacgagaaaa-gaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaa 117  Q
    ||||||||||||||||||| || ||||||||| ||| ||||||| |||| ||| || ||| ||||||| || || |||||| ||||||||||||||||||    
T  5102606 agtaacaaaatattatcactcaactaaaataaaagatgagaaaaagagggactaaatacataatattt-acatgaaaaccc-tcaacaaataaggggaaa 5102703  T
Q  118 aaaccacggggcaagagtagagaactttcactaagtggaagaaatta 164  Q
    || ||| || ||||||||||| |||||| ||||||||| ||||||||    
T  5102704 aa-ccatggagcaagagtagataacttttactaagtgggagaaatta 5102749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 11 - 121
Target Start/End: Original strand, 36528420 - 36528529
Alignment:
Q  11 ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa 110  Q
    |||| |||||||||||| ||  || ||||| ||||||||||||| ||||| ||||||| ||||||||||||| |||||||||||||||||| || |||||    
T  36528420 ggtatcagagtaacaaagtaaaattacgcaactaaaataagagatgagaatagaggaattgaacacacaata-tttacgtggaaacccctccacgaataa 36528518  T
Q  111 ggggaaaaaac 121  Q
    ||  |||||||    
T  36528519 ggaaaaaaaac 36528529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 566 - 756
Target Start/End: Complemental strand, 22510398 - 22510209
Alignment:
Q  566 acacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacga 665  Q
    |||||||||||| |||||  | ||||||  | ||||| |||||| |||||| ||||||||||||||||||| ||| ||| ||||  ||||||||| |       
T  22510398 acacatgttcactatctc--aattaaagctatttttgggagctttcaaaatatctctaccttgccaactcctgtttctatgttttgaataggccacagag 22510301  T
Q  666 ggatcgacaccatacaaacttatcagtgttga-tcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccaca 756  Q
    |||| ||||||||| |||||||||| | |||| | | |||| |||| ||||||||| | |||||||  || ||||||||| |||| ||||||    
T  22510300 ggattgacaccatataaacttatcaatattgattagactttttcatcacatctgcttggttatcatcagtttgaatcttcggcatatccaca 22510209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 664 - 758
Target Start/End: Original strand, 7504696 - 7504790
Alignment:
Q  664 gaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacact 758  Q
    |||||||||||||||  ||| || ||||| ||||| | ||||||||| |||||||||| ||| || ||||||||||| || ||||| || |||||    
T  7504696 gaggatcgacaccatgtaaatttgtcagtattgattgactttgtcataacatctgctaaattgtctttggtgtgaattttttgcatatcaacact 7504790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 605
Target Start/End: Original strand, 7504639 - 7504676
Alignment:
Q  568 acatgttcacaatctcccacttaaagtcacttttgtga 605  Q
    |||| |||||||||||||||||||||| ||||||||||    
T  7504639 acatcttcacaatctcccacttaaagttacttttgtga 7504676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 181; Significance: 2e-97; HSPs: 2)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 9 - 289
Target Start/End: Original strand, 27229 - 27500
Alignment:
Q  9 taggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaat 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  27229 taggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagagaaactgaacacacaatactttacgtggaaacccctcaacaaat 27328  T
Q  109 aaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattaccactct 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  || |||||||||||||||||||||   |||||||| |||    
T  27329 aaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagacaattacaatacttctctctaaatacaaggagagacaaattacca-tct 27427  T
Q  208 ctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatatttttc 289  Q
    |||||  ||||||| |||||| |||        ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  27428 ctctt-gaaataggtgaatactaac--------actaggagaaacctcacaggagaaactatatttcctctctatatttttc 27500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 573 - 763
Target Start/End: Original strand, 27877 - 28067
Alignment:
Q  573 ttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgaggatcga 672  Q
    |||||||||||||||||||||  ||||||| ||||||||||||||||| ||||||||| | ||  ||||||||||||||||||||||||| |||||||||    
T  27877 ttcacaatctcccacttaaagctacttttgcgagcttccaaaatctctttaccttgcccattcatgttgctacgtttccaataggccataggaggatcga 27976  T
Q  673 caccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccct 763  Q
    ||||||| |||||| ||||  ||||| || ||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  27977 caccatataaacttgtcagcattgattggttttgtaatcacatctactagattatcattggtgtgaatcttctgcatgtccacacttccct 28067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 170; Significance: 8e-91; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 170; E-Value: 8e-91
Query Start/End: Original strand, 9 - 289
Target Start/End: Complemental strand, 46191543 - 46191274
Alignment:
Q  9 taggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaat 108  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  46191543 taggaaccagagtaacaaaatattatcatgcagctaaaataagagacgagaaaagaggaactgaacaca--atattttacgtggaaacccctcaacaaat 46191446  T
Q  109 aaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattaccactct 207  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||| ||||||||   ||||||| ||||    
T  46191445 aaggggaaaaaaccacgggacaagagtagagaactttcactaagtggaagacaattacaagacttctctctaaatagaaggagagacaaattacc-ctct 46191347  T
Q  208 ctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatatttttc 289  Q
    |||||  |||||||||||||| |||        ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  46191346 ctctt-gaaataggagaatactaac--------actaggagaaacctcacaggagaaactatatttcctctctatatttttc 46191274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 11 - 192
Target Start/End: Original strand, 30697120 - 30697300
Alignment:
Q  11 ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa 110  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||    
T  30697120 ggtactagagtaacaaaatattatcacgcagctaacataagagacgagaaaagaggaacttaacacaaaatattt-acgtggaaacccctcaacaaataa 30697218  T
Q  111 ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagag 192  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  30697219 ggggaaaaagccacgtggcaagagtagagaactttcactaagtggaagaaattacaagacctctttctaaatacaaggagag 30697300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 133; E-Value: 9e-69
Query Start/End: Original strand, 9 - 192
Target Start/End: Complemental strand, 4130398 - 4130215
Alignment:
Q  9 taggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaat 108  Q
    |||||||  ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||    
T  4130398 taggtacttgagtaacaaaatattatcacgcaactaaaataagtgacgagaaaagaggaactgaacacacaaaattt-acgtggaaatccctcaacaaat 4130300  T
Q  109 aaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagag 192  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||    
T  4130299 aaagggaaaaaaccacggggcaagagtagagaactttcactaagtggaagataattacaagacttctctctaaatacaaggagag 4130215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 571 - 672
Target Start/End: Original strand, 41413422 - 41413523
Alignment:
Q  571 tgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgaggatc 670  Q
    |||||||||||| ||| |||||   ||||||| |||||| |||||| ||||| ||||||| | ||  ||||||| ||||| ||||| ||| ||||| |||    
T  41413422 tgttcacaatcttccatttaaaactacttttgcgagctttcaaaatatctctgccttgcccattcttgttgctatgtttctaatagaccaaacgagaatc 41413521  T
Q  671 ga 672  Q
    ||    
T  41413522 ga 41413523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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